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Clc10G00590 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc10G00590
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRING-type domain-containing protein
Genome locationClcChr10:597361..597774
RNA-Seq ExpressionClc10G00590
SyntenyClc10G00590
Gene Ontology termsNA
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052944.1 E3 ubiquitin-protein ligase RNF13 [Cucumis melo var. makuwa]6.3e-5678.52Show/hide
Query:  MVFNKVFFFFY-NFIGFRSKP-RFKQATLFSRCGNLNLRPMTPDDCSVVAVSSPEKALEGETCCVCLSSMGN------KGV--GTSVLPCLHQFHKVCVE
        MVFNKVFFFFY NFIGFRS+P RFKQAT     GN +LRPM  DDC+++A+SS EKALEGETCCVCLSSMGN      KGV  GTSVLPCLH+FHKVCVE
Subjt:  MVFNKVFFFFY-NFIGFRSKP-RFKQATLFSRCGNLNLRPMTPDDCSVVAVSSPEKALEGETCCVCLSSMGN------KGV--GTSVLPCLHQFHKVCVE

Query:  RWFNECRRTCPICRYSME--GGESHEDGSNQILTDEMVIWFSSFHTSGF
        RWF ECRRTCPICRYSME  GG SHED +NQILTDEMVIWFSSFHTSGF
Subjt:  RWFNECRRTCPICRYSME--GGESHEDGSNQILTDEMVIWFSSFHTSGF

KAE8649999.1 hypothetical protein Csa_010276, partial [Cucumis sativus]4.4e-5779.86Show/hide
Query:  VFFFFY-NFIGFRSKPRFKQATLFSRCGNLNLRPMTPDDCSVVAVSSPEKALEGETCCVCLSSMGN------KGVGTSVLPCLHQFHKVCVERWFNECRR
        VFFFFY N IGFRS+PRFKQAT   R GN +LRP+  DDC+++A+SS EKALEGETCCVCLSSMGN      KGVGTSVLPCLH+FHKVCVERWF ECRR
Subjt:  VFFFFY-NFIGFRSKPRFKQATLFSRCGNLNLRPMTPDDCSVVAVSSPEKALEGETCCVCLSSMGN------KGVGTSVLPCLHQFHKVCVERWFNECRR

Query:  TCPICRYSMEGGESHEDGSNQILTDEMVIWFSSFHTSGF
        TCPICRYSMEGG SHED +NQILTDEMVIWFSSFHTSGF
Subjt:  TCPICRYSMEGGESHEDGSNQILTDEMVIWFSSFHTSGF

KAG6577791.1 Protein goliath, partial [Cucurbita argyrosperma subsp. sororia]5.4e-5575.52Show/hide
Query:  MVFNKVFFFFY-NFIGFRSKPRFKQATLFSRCGNLNLRPMTPDDCSVVAVSSPEKALEGETCCVCLSSMGNK----GVGTSVLPCLHQFHKVCVERWFNE
        MVFNK+FFFFY N IGFR+ P  KQAT   R  + +LRPMTPDDC V A+SSPEKALEGETCCVCLS MGNK    G+GTSVLPC H+FHK+C++RWF E
Subjt:  MVFNKVFFFFY-NFIGFRSKPRFKQATLFSRCGNLNLRPMTPDDCSVVAVSSPEKALEGETCCVCLSSMGNK----GVGTSVLPCLHQFHKVCVERWFNE

Query:  CRRTCPICRYSME-GGESHEDGSNQILTDEMVIWFSSFHTSGF
        CRRTCPICRYSME GG +HEDGSN++LTDEMVIWFSSFHTSGF
Subjt:  CRRTCPICRYSME-GGESHEDGSNQILTDEMVIWFSSFHTSGF

KAG7015830.1 Protein goliath, partial [Cucurbita argyrosperma subsp. argyrosperma]2.7e-5474.83Show/hide
Query:  MVFNKVFFFFY-NFIGFRSKPRFKQATLFSRCGNLNLRPMTPDDCSVVAVSSPEKALEGETCCVCLSSMGNK----GVGTSVLPCLHQFHKVCVERWFNE
        MVFNK+FFFFY N IGFR+ P  KQAT   R  + +LRP TPDDC V A+SSPEKALEGETCCVCLS MGNK    G+GTSVLPC H+FHK+C++RWF E
Subjt:  MVFNKVFFFFY-NFIGFRSKPRFKQATLFSRCGNLNLRPMTPDDCSVVAVSSPEKALEGETCCVCLSSMGNK----GVGTSVLPCLHQFHKVCVERWFNE

Query:  CRRTCPICRYSME-GGESHEDGSNQILTDEMVIWFSSFHTSGF
        CRRTCPICRYSME GG +HEDGSN++LTDEMVIWFSSFHTSGF
Subjt:  CRRTCPICRYSME-GGESHEDGSNQILTDEMVIWFSSFHTSGF

XP_038906276.1 E3 ubiquitin-protein ligase RNF167-like [Benincasa hispida]9.5e-6078.77Show/hide
Query:  MVFNKVFFFFY-NFIGFRSKPRFKQATLFSRCGNLNLRPMTPDDCSVVAVSSPEKALEGETCCVCLSSMGNK--------GVGTSVLPCLHQFHKVCVER
        MVFNKVFFFFY NF+GFRS+ R KQAT     GNL+LRP+TPDDC++V +SSPEKALEGETCCVCLSSMGNK        G  TSVLPCLH+FHKVCV+R
Subjt:  MVFNKVFFFFY-NFIGFRSKPRFKQATLFSRCGNLNLRPMTPDDCSVVAVSSPEKALEGETCCVCLSSMGNK--------GVGTSVLPCLHQFHKVCVER

Query:  WFNECRRTCPICRYSMEGGESHEDGSNQILTDEMVIWFSSFHTSGF
        WF ECRRTCPICRYSMEGG SHEDG+NQILTDEMVIWFSSFHTSGF
Subjt:  WFNECRRTCPICRYSMEGGESHEDGSNQILTDEMVIWFSSFHTSGF

TrEMBL top hitse value%identityAlignment
A0A0A0L4W7 RING-type domain-containing protein4.6e-6079.86Show/hide
Query:  MVFNKVFFFFY-NFIGFRSKPRFKQATLFSRCGNLNLRPMTPDDCSVVAVSSPEKALEGETCCVCLSSMGN------KGVGTSVLPCLHQFHKVCVERWF
        M+FNKVFFFFY N IGFRS+PRFKQAT   R GN +LRP+  DDC+++A+SS EKALEGETCCVCLSSMGN      KGVGTSVLPCLH+FHKVCVERWF
Subjt:  MVFNKVFFFFY-NFIGFRSKPRFKQATLFSRCGNLNLRPMTPDDCSVVAVSSPEKALEGETCCVCLSSMGN------KGVGTSVLPCLHQFHKVCVERWF

Query:  NECRRTCPICRYSMEGGESHEDGSNQILTDEMVIWFSSFHTSGF
         ECRRTCPICRYSMEGG SHED +NQILTDEMVIWFSSFHTSGF
Subjt:  NECRRTCPICRYSMEGGESHEDGSNQILTDEMVIWFSSFHTSGF

A0A2C9WNJ5 RING-type domain-containing protein3.7e-2548.92Show/hide
Query:  MVFNKVFFFFYNFIGFRSKPRFKQATLFSRCGNLNLRPMTPDDCSVVAVSSPEKAL--EGETCCVCLSSMGNKGVGTSVLPCLHQFHKVCVERWFNECRR
        M   K+  F  NFIG R + R K    +                     SS  KA+  EGE CCVCLS M N G+   VLPCLH+FHKVC+ERWFN CR+
Subjt:  MVFNKVFFFFYNFIGFRSKPRFKQATLFSRCGNLNLRPMTPDDCSVVAVSSPEKAL--EGETCCVCLSSMGNKGVGTSVLPCLHQFHKVCVERWFNECRR

Query:  TCPICRYSMEGGESHEDGSNQILTDEMVIWFSSFHTSGF
        TCPICR+SM G E       + LT+EMVIWFSSFH +GF
Subjt:  TCPICRYSMEGGESHEDGSNQILTDEMVIWFSSFHTSGF

A0A5D3CJ45 E3 ubiquitin-protein ligase RNF133.1e-5678.52Show/hide
Query:  MVFNKVFFFFY-NFIGFRSKP-RFKQATLFSRCGNLNLRPMTPDDCSVVAVSSPEKALEGETCCVCLSSMGN------KGV--GTSVLPCLHQFHKVCVE
        MVFNKVFFFFY NFIGFRS+P RFKQAT     GN +LRPM  DDC+++A+SS EKALEGETCCVCLSSMGN      KGV  GTSVLPCLH+FHKVCVE
Subjt:  MVFNKVFFFFY-NFIGFRSKP-RFKQATLFSRCGNLNLRPMTPDDCSVVAVSSPEKALEGETCCVCLSSMGN------KGV--GTSVLPCLHQFHKVCVE

Query:  RWFNECRRTCPICRYSME--GGESHEDGSNQILTDEMVIWFSSFHTSGF
        RWF ECRRTCPICRYSME  GG SHED +NQILTDEMVIWFSSFHTSGF
Subjt:  RWFNECRRTCPICRYSME--GGESHEDGSNQILTDEMVIWFSSFHTSGF

A0A6J1CW69 E3 ubiquitin-protein ligase SDIR1-like6.0e-4465.96Show/hide
Query:  MVFNKVFFFFYNFIGFRSKPRFKQATLFSRCGNLNLRPMTPDDCSV---VAVSSPEKALEGE-TCCVCLSSMGNKGVGTSVLPCLHQFHKVCVERWFNEC
        MVFN+VFFFFYNFIGFR +P+ KQ TL    G+  LR M  D+  +   V +SS  KALEGE  CCVCLSS+  +G+ TSVLPCLH+FHKVCV+RWF E 
Subjt:  MVFNKVFFFFYNFIGFRSKPRFKQATLFSRCGNLNLRPMTPDDCSV---VAVSSPEKALEGE-TCCVCLSSMGNKGVGTSVLPCLHQFHKVCVERWFNEC

Query:  RRTCPICRYSMEGGESHEDGSNQILTDEMVIWFSSFHTSGF
        RRTCPICRYSMEG     +   QILTDEMVIWFSSFHTSGF
Subjt:  RRTCPICRYSMEGGESHEDGSNQILTDEMVIWFSSFHTSGF

W9SMW3 E3 ubiquitin-protein ligase Arkadia2.8e-2546.72Show/hide
Query:  MVFNKVFFFFYNFIGFRSKPRFKQATLFSRCGNLNLRPMTPDDCSVVAVSSPEKALEGETCCVCLSSMGNKGVGTSVLPCLHQFHKVCVERWFNECRRTC
        MV NK      NFI  + +PR K+A         N+     +     A  S   A EGE CCVCLS++  +G  TS+LPC H+FHK CVERWF+ C++TC
Subjt:  MVFNKVFFFFYNFIGFRSKPRFKQATLFSRCGNLNLRPMTPDDCSVVAVSSPEKALEGETCCVCLSSMGNKGVGTSVLPCLHQFHKVCVERWFNECRRTC

Query:  PICRYSMEGGESHEDGSNQILTDEMVIWFSSFHTSGF
        PICR+SME  + +E    ++LT+EMVI+FSSFH +GF
Subjt:  PICRYSMEGGESHEDGSNQILTDEMVIWFSSFHTSGF

SwissProt top hitse value%identityAlignment
Q4R6Y5 E3 ubiquitin-protein ligase ZNRF41.5e-0734.33Show/hide
Query:  ETCCVCLSSMGNKGVGTSVLPCLHQFHKVCVERWFNEC-RRTCPICRYSMEGGESHEDGSNQILTDE
        + C +CL     +G    +LPC H +H  C++ WF++  RR+CP+C+ S+ G E   D +    +DE
Subjt:  ETCCVCLSSMGNKGVGTSVLPCLHQFHKVCVERWFNEC-RRTCPICRYSMEGGESHEDGSNQILTDE

Q5SPX3 RING finger protein 2155.7e-0737.23Show/hide
Query:  QATLFSRCGNLNLRPMTPDDC--SVVAVSSPEKALEGETCCVCLSSMGNKGVGTSVLPCLHQFHKVCVERWFNECRRTCPICRYSMEGGESHED
        Q  LF R     L  +    C  S  A S PE     ETC VCL    NK     VLPC H+FH+ CV+ W    ++TCP+C++++ G    +D
Subjt:  QATLFSRCGNLNLRPMTPDDC--SVVAVSSPEKALEGETCCVCLSSMGNKGVGTSVLPCLHQFHKVCVERWFNECRRTCPICRYSMEGGESHED

Q5XIL0 E3 ubiquitin-protein ligase RNF1672.5e-0729.87Show/hide
Query:  MTPDDCSVVAVSSPEKALEGETCCVCLSSMGNKGVGTSVLPCLHQFHKVCVERWFNECRRTCPICRYSMEGGESHED
        +T +    +     +K  E + C +CL      G    +LPC H +H  CV+ W  + R+TCPIC+  +  G   E+
Subjt:  MTPDDCSVVAVSSPEKALEGETCCVCLSSMGNKGVGTSVLPCLHQFHKVCVERWFNECRRTCPICRYSMEGGESHED

Q91XF4 E3 ubiquitin-protein ligase RNF1671.1e-0729.07Show/hide
Query:  MTPDDCSVVAVSSPEKALEGETCCVCLSSMGNKGVGTSVLPCLHQFHKVCVERWFNECRRTCPICRYSMEGGESHEDGSNQILTDE
        +T +    +     +K  E + C +CL      G    VLPC H +H  CV+ W  + R+TCPIC+  +  G   E+   +    E
Subjt:  MTPDDCSVVAVSSPEKALEGETCCVCLSSMGNKGVGTSVLPCLHQFHKVCVERWFNECRRTCPICRYSMEGGESHEDGSNQILTDE

Q9H6Y7 E3 ubiquitin-protein ligase RNF1673.9e-0829.47Show/hide
Query:  ATLFSRC----GNLNLRPMTPDDCSVVAVSSPEKALEGETCCVCLSSMGNKGVGTSVLPCLHQFHKVCVERWFNECRRTCPICRYSMEGGESHED
        A + +RC      L    +T +    +     +K  + + C +CL      G    VLPC H +H  CV+ W  + R+TCPIC+  +  G   ED
Subjt:  ATLFSRC----GNLNLRPMTPDDCSVVAVSSPEKALEGETCCVCLSSMGNKGVGTSVLPCLHQFHKVCVERWFNECRRTCPICRYSMEGGESHED

Arabidopsis top hitse value%identityAlignment
AT1G24580.1 RING/U-box superfamily protein2.0e-0734.43Show/hide
Query:  CSVVAVSSPEKALEGETCCVCLSSMGNKGVGTSVLPCLHQFHKVCVERWFNECRRTCPICR
        C  +     EK +E   CCVCL     +   + ++ C H FH+ C++ WF     TCP+CR
Subjt:  CSVVAVSSPEKALEGETCCVCLSSMGNKGVGTSVLPCLHQFHKVCVERWFNECRRTCPICR

AT1G35630.1 Protease-associated (PA) RING/U-box zinc finger family protein1.5e-0733.33Show/hide
Query:  EKALEGETCCVCLSS--MGNKGVGTSVLPCLHQFHKVCVERWFNECRRTCPICRYSMEGG
        E++    TC +C+    +G K     +LPC H++H VC++ W   CR  CP+C+ +   G
Subjt:  EKALEGETCCVCLSS--MGNKGVGTSVLPCLHQFHKVCVERWFNECRRTCPICRYSMEGG

AT3G51325.1 RING/U-box superfamily protein1.1e-1347.44Show/hide
Query:  EGETCCVCLSSMGNKGVGTSVLPCLHQFHKVCVERWFNECRR-TCPICRYSMEGGESHEDGSNQILTDEMVIWFSSFH
        E E C VCL  M  K V  S LPC H+FH +CV+ WFN  R+  CP+CR+S          +  +LTDE+++WFSSFH
Subjt:  EGETCCVCLSSMGNKGVGTSVLPCLHQFHKVCVERWFNECRR-TCPICRYSMEGGESHEDGSNQILTDEMVIWFSSFH

AT3G55530.1 RING/U-box superfamily protein1.2e-0736.23Show/hide
Query:  AVSSPEKALEGE-TCCVCLSSMGNKGVGTSVLPCLHQFHKVCVERWFNECRRTCPICRYSMEGGESHED
        + +  +K  E E TC VCL  +   G     LPCLHQFH  C++ W  + + TCP+C++    G   +D
Subjt:  AVSSPEKALEGE-TCCVCLSSMGNKGVGTSVLPCLHQFHKVCVERWFNECRRTCPICRYSMEGGESHED

AT4G32600.1 RING/U-box superfamily protein3.1e-0840Show/hide
Query:  VVAVSSPEKALEGE--TCCVCLSSMGNKGVGTSVLPCLHQFHKVCVERWFNECRRTCPICRYSMEGGESHEDGSNQ-ILT
        V A +  E+A+ GE   CC+CL+   N       LPC H FHK CV++W  +   +CP+C+   E GE + D ++Q ILT
Subjt:  VVAVSSPEKALEGE--TCCVCLSSMGNKGVGTSVLPCLHQFHKVCVERWFNECRRTCPICRYSMEGGESHEDGSNQ-ILT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTCAACAAGGTGTTCTTCTTCTTCTACAACTTCATCGGCTTCCGAAGCAAGCCGAGATTCAAACAAGCAACTCTATTTTCTCGCTGTGGCAATTTGAAC
CTCCGACCTATGACACCTGATGATTGTAGTGTCGTAGCTGTTTCAAGTCCTGAGAAGGCGTTGGAGGGCGAGACATGTTGCGTGTGCTTGTCGAGTATGGGGAAC
AAGGGGGTTGGCACGAGTGTTCTTCCTTGCTTGCACCAGTTTCACAAGGTATGTGTCGAACGATGGTTCAACGAGTGTCGGAGAACTTGTCCGATATGTCGATAT
TCGATGGAAGGAGGAGAAAGTCATGAAGATGGGAGTAATCAAATACTCACGGATGAGATGGTGATATGGTTTTCTTCTTTCCACACCTCTGGTTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTCAACAAGGTGTTCTTCTTCTTCTACAACTTCATCGGCTTCCGAAGCAAGCCGAGATTCAAACAAGCAACTCTATTTTCTCGCTGTGGCAATTTGAAC
CTCCGACCTATGACACCTGATGATTGTAGTGTCGTAGCTGTTTCAAGTCCTGAGAAGGCGTTGGAGGGCGAGACATGTTGCGTGTGCTTGTCGAGTATGGGGAAC
AAGGGGGTTGGCACGAGTGTTCTTCCTTGCTTGCACCAGTTTCACAAGGTATGTGTCGAACGATGGTTCAACGAGTGTCGGAGAACTTGTCCGATATGTCGATAT
TCGATGGAAGGAGGAGAAAGTCATGAAGATGGGAGTAATCAAATACTCACGGATGAGATGGTGATATGGTTTTCTTCTTTCCACACCTCTGGTTTTTGA
Protein sequenceShow/hide protein sequence
MVFNKVFFFFYNFIGFRSKPRFKQATLFSRCGNLNLRPMTPDDCSVVAVSSPEKALEGETCCVCLSSMGNKGVGTSVLPCLHQFHKVCVERWFNECRRTCPICRY
SMEGGESHEDGSNQILTDEMVIWFSSFHTSGF