CuGenDBv2

Gene ID	Clc10G01700
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	glycine-rich cell wall structural protein 1.8-like
Genome location	ClcChr10:1592484..1593850
RNA-Seq Expression	Clc10G01700
Synteny	Clc10G01700
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAE8650024.1 hypothetical protein Csa_011560 [Cucumis sativus]

5.1e-62

78.85

Show/hide

Query:  LGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDSSLGGSGRYEGGGGRDSGYGGRNDDRGVGYGN-GGGYGGVGGHG
        LGLASA RTLLDYDPRT  Y YDRPSPRVGYDPGH DESYD AYGGSSSRGHGIGDS+LGGSG YEGGG  D GYG R++DRGVGYGN GGGYGGVGGHG
Subjt:  LGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDSSLGGSGRYEGGGGRDSGYGGRNDDRGVGYGN-GGGYGGVGGHG

Query:  DGYGSNSGGGYGNRYGPSL-------GGRGSGNGYGD-SRGYGARDNGYGSG---GGVGSGYGGGSG-SVGYGNGGVHGGEYDNSKGSGEEGGYDGGYAV
        DGYG+N GG YG+RYGPSL       GG+GSGNGY D SRG GARDN YG     GG  SGYG G G + GYGNGGVHGGEYDNSKGSGEEGGYDGGYAV
Subjt:  DGYGSNSGGGYGNRYGPSL-------GGRGSGNGYGD-SRGYGARDNGYGSG---GGVGSGYGGGSG-SVGYGNGGVHGGEYDNSKGSGEEGGYDGGYAV

Query:  KNSISKEN
        KNSISK N
Subjt:  KNSISKEN

XP_008449165.1 PREDICTED: glycine-rich cell wall structural protein 1.8-like [Cucumis melo]

1.6e-68

81.82

Show/hide

Query:  GLGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDSSLGGSGRYEGGGGRDSGYGGRNDDRGVGYGNGGGYGGVGGHG
        GLGLASA RTLLDYDPRTRHY YDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDS+LGGSG YEGGG RD GYG RND+RGVGYGNGGGYGGVGGHG
Subjt:  GLGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDSSLGGSGRYEGGGGRDSGYGGRNDDRGVGYGNGGGYGGVGGHG

Query:  DGYGSNSGGGYGNRYGPSL-------GGRGSGNGYGD--SRGYGARDNGYGSG---GGVGSGYGGGSG-SVGYGNGGVHGGEYDNSKGSGEEGGYDGGYA
        DGYG+N GGGYG+RYGPSL       GG+GS NGY D  S GYG RDNGYG      G  SGYG G G S GYGNGGVHGGEYDNSKGSGEEGGYDGGYA
Subjt:  DGYGSNSGGGYGNRYGPSL-------GGRGSGNGYGD--SRGYGARDNGYGSG---GGVGSGYGGGSG-SVGYGNGGVHGGEYDNSKGSGEEGGYDGGYA

Query:  VKNSISKEN
        VKNSISK N
Subjt:  VKNSISKEN

XP_011652712.1 glycine-rich cell wall structural protein 2 [Cucumis sativus]

5.1e-62

78.85

Show/hide

Query:  LGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDSSLGGSGRYEGGGGRDSGYGGRNDDRGVGYGN-GGGYGGVGGHG
        LGLASA RTLLDYDPRT  Y YDRPSPRVGYDPGH DESYD AYGGSSSRGHGIGDS+LGGSG YEGGG  D GYG R++DRGVGYGN GGGYGGVGGHG
Subjt:  LGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDSSLGGSGRYEGGGGRDSGYGGRNDDRGVGYGN-GGGYGGVGGHG

Query:  DGYGSNSGGGYGNRYGPSL-------GGRGSGNGYGD-SRGYGARDNGYGSG---GGVGSGYGGGSG-SVGYGNGGVHGGEYDNSKGSGEEGGYDGGYAV
        DGYG+N GG YG+RYGPSL       GG+GSGNGY D SRG GARDN YG     GG  SGYG G G + GYGNGGVHGGEYDNSKGSGEEGGYDGGYAV
Subjt:  DGYGSNSGGGYGNRYGPSL-------GGRGSGNGYGD-SRGYGARDNGYGSG---GGVGSGYGGGSG-SVGYGNGGVHGGEYDNSKGSGEEGGYDGGYAV

Query:  KNSISKEN
        KNSISK N
Subjt:  KNSISKEN

XP_038903414.1 glycine-rich cell wall structural protein 1.8-like [Benincasa hispida]

7.9e-71

71.31

Show/hide

Query:  GLGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDSSLGG-SGRYEGGGGRDSGYGGRNDD-----------------
        G GLAS ARTLLDYDPRTR Y+YDRP+PRVGYDPGHRDESYDNAYGGSS+RGHGIGDS+ GG SGRYEGGGGRDSGYG RNDD                 
Subjt:  GLGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDSSLGG-SGRYEGGGGRDSGYGGRNDD-----------------

Query:  ----------------------RGVGYGNGGGYGGVGGHGDGYGSNSGGGYGNRYGPSL--------GGRGSGNGYGDSRGYGARDNGYGSGGGVGSGYG
                              RGVGYGNGGGYG VG HGDGYGSN GGGYGN YGPSL        GGRGSGNGYGDS GYGARDNGYGSGGG G GYG
Subjt:  ----------------------RGVGYGNGGGYGGVGGHGDGYGSNSGGGYGNRYGPSL--------GGRGSGNGYGDSRGYGARDNGYGSGGGVGSGYG

Query:  GGSGSVGYGNGGVHGGEYDNSKGSGEEGGYDGGYAVKNSISKEN
        GG+GS GYGNGGVH GEYDN+KGSGEEGGYDG YA+KNSISKEN
Subjt:  GGSGSVGYGNGGVHGGEYDNSKGSGEEGGYDGGYAVKNSISKEN

XP_038903641.1 glycine-rich cell wall structural protein 2-like [Benincasa hispida]

2.6e-66

70.89

Show/hide

Query:  LGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDSSLGGSGRYEGGGGRDSGYGGRNDDRGVGYGNGGGYGGVGGHGD
        LGLASAAR LLDYDPRTRHYDYDRPSPRVGYDP HRD SYDN+YGG S+RG+GIGDS+LGGSGRYEGGG  +  Y   NDDRGVGYGNGGGYGGVGGHGD
Subjt:  LGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDSSLGGSGRYEGGGGRDSGYGGRNDDRGVGYGNGGGYGGVGGHGD

Query:  GYGSNSGGGYGNRYGPSLGGRGSG-------------------------------------NGYGDSRGYGARDNGYGSGGGVGSGY-----GGGSGSVG
        GYGSN GGGY  RYGPSLGG G G                                     NGYGDSRGYGARDNGYGSGGGVG GY     GG SGS G
Subjt:  GYGSNSGGGYGNRYGPSLGGRGSG-------------------------------------NGYGDSRGYGARDNGYGSGGGVGSGY-----GGGSGSVG

Query:  YGNGGVHGGEYDNSKGSGEEGGYDGGYAVKNSISKEN
        YGNGGVHGGEYDNSKGSGEEGGYDGGYA+KNSIS +N
Subjt:  YGNGGVHGGEYDNSKGSGEEGGYDGGYAVKNSISKEN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L1V3 Glycine-rich protein-1

2.5e-62

78.85

Show/hide

Query:  LGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDSSLGGSGRYEGGGGRDSGYGGRNDDRGVGYGN-GGGYGGVGGHG
        LGLASA RTLLDYDPRT  Y YDRPSPRVGYDPGH DESYD AYGGSSSRGHGIGDS+LGGSG YEGGG  D GYG R++DRGVGYGN GGGYGGVGGHG
Subjt:  LGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDSSLGGSGRYEGGGGRDSGYGGRNDDRGVGYGN-GGGYGGVGGHG

Query:  DGYGSNSGGGYGNRYGPSL-------GGRGSGNGYGD-SRGYGARDNGYGSG---GGVGSGYGGGSG-SVGYGNGGVHGGEYDNSKGSGEEGGYDGGYAV
        DGYG+N GG YG+RYGPSL       GG+GSGNGY D SRG GARDN YG     GG  SGYG G G + GYGNGGVHGGEYDNSKGSGEEGGYDGGYAV
Subjt:  DGYGSNSGGGYGNRYGPSL-------GGRGSGNGYGD-SRGYGARDNGYGSG---GGVGSGYGGGSG-SVGYGNGGVHGGEYDNSKGSGEEGGYDGGYAV

Query:  KNSISKEN
        KNSISK N
Subjt:  KNSISKEN

A0A1S3BM26 glycine-rich cell wall structural protein 1.0-like

6.7e-60

60.29

Show/hide

Query:  LGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDSSLGGSGRYEGGGGRD----------------------------
        LGLASAARTLLDYDPRTR YDYD P+PRVGYDP HRD+SYDNAYGGSS+RG+G+GDS+LGGSGRYEGGGG D                            
Subjt:  LGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDSSLGGSGRYEGGGGRD----------------------------

Query:  ------------------------------------------SGYGGRNDDRGVGYGNGGGYGGVGGHGDGYGSNSGGGYGNRYGPSL-------GGRGS
                                                  +GYGGRNDDRGVGYGNGGGYGGVGGHGDGYG+N GGGYG+RY PSL       GG+GS
Subjt:  ------------------------------------------SGYGGRNDDRGVGYGNGGGYGGVGGHGDGYGSNSGGGYGNRYGPSL-------GGRGS

Query:  GNGYGD-SRGYGARDNGYGSG---GGVGSGYGGGSG-SVGYGNGGVHGGEYDNSKGSGEEGGYDGGYAVKNSISKEN
        GNGY D SRGYG  DNGYG     GG  SGYG G G S GYGNGGVHGGEYDNSKGSGE GG DGGYAVKNSISKEN
Subjt:  GNGYGD-SRGYGARDNGYGSG---GGVGSGYGGGSG-SVGYGNGGVHGGEYDNSKGSGEEGGYDGGYAVKNSISKEN

A0A1S3BMC4 glycine-rich cell wall structural protein 1.8-like

7.9e-69

81.82

Show/hide

Query:  GLGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDSSLGGSGRYEGGGGRDSGYGGRNDDRGVGYGNGGGYGGVGGHG
        GLGLASA RTLLDYDPRTRHY YDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDS+LGGSG YEGGG RD GYG RND+RGVGYGNGGGYGGVGGHG
Subjt:  GLGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDSSLGGSGRYEGGGGRDSGYGGRNDDRGVGYGNGGGYGGVGGHG

Query:  DGYGSNSGGGYGNRYGPSL-------GGRGSGNGYGD--SRGYGARDNGYGSG---GGVGSGYGGGSG-SVGYGNGGVHGGEYDNSKGSGEEGGYDGGYA
        DGYG+N GGGYG+RYGPSL       GG+GS NGY D  S GYG RDNGYG      G  SGYG G G S GYGNGGVHGGEYDNSKGSGEEGGYDGGYA
Subjt:  DGYGSNSGGGYGNRYGPSL-------GGRGSGNGYGD--SRGYGARDNGYGSG---GGVGSGYGGGSG-SVGYGNGGVHGGEYDNSKGSGEEGGYDGGYA

Query:  VKNSISKEN
        VKNSISK N
Subjt:  VKNSISKEN

A0A5A7UEU3 Glycine-rich cell wall structural protein 1.0-like

6.7e-60

60.29

Show/hide

Query:  LGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDSSLGGSGRYEGGGGRD----------------------------
        LGLASAARTLLDYDPRTR YDYD P+PRVGYDP HRD+SYDNAYGGSS+RG+G+GDS+LGGSGRYEGGGG D                            
Subjt:  LGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDSSLGGSGRYEGGGGRD----------------------------

Query:  ------------------------------------------SGYGGRNDDRGVGYGNGGGYGGVGGHGDGYGSNSGGGYGNRYGPSL-------GGRGS
                                                  +GYGGRNDDRGVGYGNGGGYGGVGGHGDGYG+N GGGYG+RY PSL       GG+GS
Subjt:  ------------------------------------------SGYGGRNDDRGVGYGNGGGYGGVGGHGDGYGSNSGGGYGNRYGPSL-------GGRGS

Query:  GNGYGD-SRGYGARDNGYGSG---GGVGSGYGGGSG-SVGYGNGGVHGGEYDNSKGSGEEGGYDGGYAVKNSISKEN
        GNGY D SRGYG  DNGYG     GG  SGYG G G S GYGNGGVHGGEYDNSKGSGE GG DGGYAVKNSISKEN
Subjt:  GNGYGD-SRGYGARDNGYGSG---GGVGSGYGGGSG-SVGYGNGGVHGGEYDNSKGSGEEGGYDGGYAVKNSISKEN

A0A5A7UHU2 Glycine-rich cell wall structural protein 1.8-like

7.9e-69

81.82

Show/hide

Query:  GLGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDSSLGGSGRYEGGGGRDSGYGGRNDDRGVGYGNGGGYGGVGGHG
        GLGLASA RTLLDYDPRTRHY YDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDS+LGGSG YEGGG RD GYG RND+RGVGYGNGGGYGGVGGHG
Subjt:  GLGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDSSLGGSGRYEGGGGRDSGYGGRNDDRGVGYGNGGGYGGVGGHG

Query:  DGYGSNSGGGYGNRYGPSL-------GGRGSGNGYGD--SRGYGARDNGYGSG---GGVGSGYGGGSG-SVGYGNGGVHGGEYDNSKGSGEEGGYDGGYA
        DGYG+N GGGYG+RYGPSL       GG+GS NGY D  S GYG RDNGYG      G  SGYG G G S GYGNGGVHGGEYDNSKGSGEEGGYDGGYA
Subjt:  DGYGSNSGGGYGNRYGPSL-------GGRGSGNGYGD--SRGYGARDNGYGSG---GGVGSGYGGGSG-SVGYGNGGVHGGEYDNSKGSGEEGGYDGGYA

Query:  VKNSISKEN
        VKNSISK N
Subjt:  VKNSISKEN

SwissProt top hits

e value

%identity

Alignment

P10495 Glycine-rich cell wall structural protein 1.0

6.0e-05

46.45

Show/hide

Query:  GGSSSRGHGIGDSSLGGSGRYEGGGGRDSGYGGRNDDRGVGYGNGGGYGGVG-GHGDGYGSNSGGGYGNRYGPSLGGR--GSGNGYGDSRGYGARDNGYG
        GG+   G+G G    GG G Y GGG    GYGG     G G G GGG GG G G+G G GS +GGGYG   G   GG   G G G G + G GA   G G
Subjt:  GGSSSRGHGIGDSSLGGSGRYEGGGGRDSGYGGRNDDRGVGYGNGGGYGGVG-GHGDGYGSNSGGGYGNRYGPSLGGR--GSGNGYGDSRGYGARDNGYG

Query:  SGGGVGSGYGGGS-----------GSVGYGNGGVHGGEYDNSKGSGEEGGYDGGY
        +G G G GYGGG+           G  GYG GG  G  Y    GSGE GG+ GGY
Subjt:  SGGGVGSGYGGGS-----------GSVGYGNGGVHGGEYDNSKGSGEEGGYDGGY

P35527 Keratin, type I cytoskeletal 9

3.0e-04

50.66

Show/hide

Query:  GGSSSRGHGIGDSSLGGSGRYEGGGGRDSGYGGRNDDRGVGYGNGGGYGGVGGHGDGYGSNSGGGYGNRYGPSLGGRGSGNGYGDSRGYGAR-DNGYGSG
        GG    G   G  S GGSG   GGGG   GYGG +  RG   G+GG YGG    G G G  SGGGYG   G S GG   G+G G S G G     G GSG
Subjt:  GGSSSRGHGIGDSSLGGSGRYEGGGGRDSGYGGRNDDRGVGYGNGGGYGGVGGHGDGYGSNSGGGYGNRYGPSLGGRGSGNGYGDSRGYGAR-DNGYGSG

Query:  GGVGSGYGGGSGSVGYGNGGVH------GGEYDNSKGSGEE-----GGYDGG
        GG G GYGGGSGS G G+GG H      GGE   S G GEE     GGY GG
Subjt:  GGVGSGYGGGSGSVGYGNGGVH------GGEYDNSKGSGEE-----GGYDGG

Arabidopsis top hits

e value

%identity

Alignment

AT2G36120.1 Glycine-rich protein family

5.2e-04

41.09

Show/hide

Query:  GLGLASAARTLL---DYDPRTRHYDYDRP-----SPRVGYDPGHRDESYDNAYGGSSSRGHGIGDSSLGGSGRY------EGGGGRDSGYGGRNDDRGVG
        GLGL SA R LL   + +     Y  +          +G  PG        +  G  + GHG G    GG G +       GGGG   GYGG     G G
Subjt:  GLGLASAARTLL---DYDPRTRHYDYDRP-----SPRVGYDPGHRDESYDNAYGGSSSRGHGIGDSSLGGSGRY------EGGGGRDSGYGGRNDDRGVG

Query:  YGNGGGYGG--VGGHGDGYGSNSGGGYGNRYGPSLGGRGSGNGYGDSRGYGARD-NGYGSGGGVGSGYGGGSGSVGYGNGGVHGGEYDNSKGSGEEGGYD
         G G GYGG   GGHG G G  +GGG G   G   GG G G G G   GYG     G+G GGG G+G GGG GS   G GG HGG Y    G+GE  GY 
Subjt:  YGNGGGYGG--VGGHGDGYGSNSGGGYGNRYGPSLGGRGSGNGYGDSRGYGARD-NGYGSGGGVGSGYGGGSGSVGYGNGGVHGGEYDNSKGSGEEGGYD

Query:  GG
        GG
Subjt:  GG

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCACCAGCTCTCCACCCAACAGAACCTTTTCTCCACCTTAAACAGGATCCTTAACATCAATCCCAACTCCAAGAAAAATACTCTTCCAAGTAACATCGCAAGAGCCAC
TCTTTCGTGTACCTGGTTGGAGAGAAATAATAGAACTTTCCATGGCAAAGATAAATCACAATGGAAGATATCATCAGCCTTGCCTCCTTGTGGGTTAGGTTTAGCTTCGG
CTGCCAGAACCCTTCTTGACTATGATCCTCGTACACGTCACTATGATTATGATCGTCCTAGTCCTAGAGTAGGTTACGATCCTGGTCATCGTGATGAATCCTATGATAAT
GCATATGGTGGAAGCTCTAGTAGAGGACATGGAATTGGAGACTCGTCTCTTGGAGGTTCCGGACGATATGAAGGTGGTGGAGGACGTGATTCTGGATATGGAGGTCGAAA
TGATGATCGTGGGGTTGGATACGGTAATGGTGGTGGGTATGGAGGTGTAGGAGGACATGGTGATGGTTATGGTAGCAATTCTGGTGGAGGCTATGGAAATCGCTATGGCC
CTTCCCTTGGAGGTAGAGGAAGTGGCAATGGCTATGGAGATTCTCGTGGATATGGAGCACGTGACAATGGGTATGGGAGTGGTGGAGGAGTTGGTAGTGGCTATGGTGGT
GGTAGTGGAAGTGTTGGTTATGGCAATGGTGGTGTTCATGGAGGAGAATATGATAATAGCAAAGGAAGTGGAGAAGAAGGAGGATATGATGGTGGGTATGCTGTTAAAAA
TTCCATCTCAAAGGAGAATTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MHQLSTQQNLFSTLNRILNINPNSKKNTLPSNIARATLSCTWLERNNRTFHGKDKSQWKISSALPPCGLGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPGHRDESYDN
AYGGSSSRGHGIGDSSLGGSGRYEGGGGRDSGYGGRNDDRGVGYGNGGGYGGVGGHGDGYGSNSGGGYGNRYGPSLGGRGSGNGYGDSRGYGARDNGYGSGGGVGSGYGG
GSGSVGYGNGGVHGGEYDNSKGSGEEGGYDGGYAVKNSISKEN

Clc10G01700 (gene) of Watermelon (cordophanus) v2 genome