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Clc10G01770 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc10G01770
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
Genome locationClcChr10:1659091..1660006
RNA-Seq ExpressionClc10G01770
SyntenyClc10G01770
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650028.1 hypothetical protein Csa_011525 [Cucumis sativus]2.0e-3672.73Show/hide
Query:  MSLNCLSCQLLQRTDSERHRDQKIQTYYCSDEFDSSQRSWSGNLSFRPHDRQNRG--------GFRGLAENKVAPIGHRRTVSYDGKEPRLVRSSGMRRD
        MSLNCLSCQ+LQRTDSERHRD+++QTYY SDEF+SS+RSWSGNL  RP+     G        GFRG+A+NKVAPIGHRR VS+ GKEPRL+RSSGMRRD
Subjt:  MSLNCLSCQLLQRTDSERHRDQKIQTYYCSDEFDSSQRSWSGNLSFRPHDRQNRG--------GFRGLAENKVAPIGHRRTVSYDGKEPRLVRSSGMRRD

Query:  WSFEDLRTIR
        WSFEDLR IR
Subjt:  WSFEDLRTIR

XP_008448684.1 PREDICTED: uncharacterized protein LOC103490783 [Cucumis melo]3.2e-4283.04Show/hide
Query:  MSLNCLSCQLLQRTDSERHRDQKIQTYYCSDEFDSSQRSWSGNLSFRPHDRQNRGG-FRGLAENKVAPIGHRRTVSYDGKEPRLVRSSGMRRDWSFEDLR
        MSLNCLSCQLLQRTDSERHRD++IQTYY SDEFD SQRSWSGNLS     RQNRGG FRG+A+NKVAP+ HRR VS+ GKEPRLVRSSGMRRDWSFEDLR
Subjt:  MSLNCLSCQLLQRTDSERHRDQKIQTYYCSDEFDSSQRSWSGNLSFRPHDRQNRGG-FRGLAENKVAPIGHRRTVSYDGKEPRLVRSSGMRRDWSFEDLR

Query:  TIREEREPSANS
        TIREE+EPS NS
Subjt:  TIREEREPSANS

XP_023539506.1 uncharacterized protein LOC111800149 [Cucurbita pepo subsp. pepo]8.5e-2763.03Show/hide
Query:  MSLNCLSCQL-LQRTDSERHRDQKIQTYYCSDEFDSSQRSWSGNLSFRPHDRQNRGGFRGLAENKVAPIGHRRTVSY-------DGKEPRLVRSSGMRRD
        MSLNCLSCQL LQR+DS++  +Q     Y +D+  S  RSWSGNLSFRP  RQN  GFR   ENKVAP GHRR  S         GKEPRL+RS+GMRRD
Subjt:  MSLNCLSCQL-LQRTDSERHRDQKIQTYYCSDEFDSSQRSWSGNLSFRPHDRQNRGGFRGLAENKVAPIGHRRTVSY-------DGKEPRLVRSSGMRRD

Query:  WSFEDLRTIREEREPSANS
        WSFEDLR IREE+E S NS
Subjt:  WSFEDLRTIREEREPSANS

XP_031737872.1 uncharacterized protein LOC116402546 [Cucumis sativus]4.0e-4072.27Show/hide
Query:  MSLNCLSCQLLQRTDSERHRDQKIQTYYCSDEFDSSQRSWSGNLSFRPHDRQNRG--------GFRGLAENKVAPIGHRRTVSYDGKEPRLVRSSGMRRD
        MSLNCLSCQ+LQRTDSERHRD+++QTYY SDEF+SS+RSWSGNL  RP+     G        GFRG+A+NKVAPIGHRR VS+ GKEPRL+RSSGMRRD
Subjt:  MSLNCLSCQLLQRTDSERHRDQKIQTYYCSDEFDSSQRSWSGNLSFRPHDRQNRG--------GFRGLAENKVAPIGHRRTVSYDGKEPRLVRSSGMRRD

Query:  WSFEDLRTIREEREPSANS
        WSFEDLR IREE++PS NS
Subjt:  WSFEDLRTIREEREPSANS

XP_038905810.1 uncharacterized protein LOC120091761 [Benincasa hispida]2.7e-4990.83Show/hide
Query:  MSLNCLSCQLLQRTDSERHRDQKIQTYYCSDEFDSSQRSWSGNLSFRPHDRQNRGGFRGLAENKVAPIGHRRTVSYDGKEPRLVRSSGMRRDWSFEDLRT
        MSLNCLSCQ+LQRTDSERHRDQ+IQTYY SDEFDSS+RSWSGNLSFRPHDR NRGGFRGL ENKVAPI HRR VS+ GKEPRLVRSSGMRRDWSFEDLRT
Subjt:  MSLNCLSCQLLQRTDSERHRDQKIQTYYCSDEFDSSQRSWSGNLSFRPHDRQNRGGFRGLAENKVAPIGHRRTVSYDGKEPRLVRSSGMRRDWSFEDLRT

Query:  IREEREPSA
        IREEREPSA
Subjt:  IREEREPSA

TrEMBL top hitse value%identityAlignment
A0A0A0L198 Uncharacterized protein6.6e-4174.78Show/hide
Query:  MSLNCLSCQLLQRTDSERHRDQKIQTYYCSDEFDSSQRSWSGNLSFRPHDRQNRG----GFRGLAENKVAPIGHRRTVSYDGKEPRLVRSSGMRRDWSFE
        MSLNCLSCQ+LQRTDSERHRD+++QTYY SDEF+SS+RSWSGNL  RP+     G    GFRG+A+NKVAPIGHRR VS+ GKEPRL+RSSGMRRDWSFE
Subjt:  MSLNCLSCQLLQRTDSERHRDQKIQTYYCSDEFDSSQRSWSGNLSFRPHDRQNRG----GFRGLAENKVAPIGHRRTVSYDGKEPRLVRSSGMRRDWSFE

Query:  DLRTIREEREPSANS
        DLR IREE++PS NS
Subjt:  DLRTIREEREPSANS

A0A1S3BJN6 uncharacterized protein LOC1034907831.6e-4283.04Show/hide
Query:  MSLNCLSCQLLQRTDSERHRDQKIQTYYCSDEFDSSQRSWSGNLSFRPHDRQNRGG-FRGLAENKVAPIGHRRTVSYDGKEPRLVRSSGMRRDWSFEDLR
        MSLNCLSCQLLQRTDSERHRD++IQTYY SDEFD SQRSWSGNLS     RQNRGG FRG+A+NKVAP+ HRR VS+ GKEPRLVRSSGMRRDWSFEDLR
Subjt:  MSLNCLSCQLLQRTDSERHRDQKIQTYYCSDEFDSSQRSWSGNLSFRPHDRQNRGG-FRGLAENKVAPIGHRRTVSYDGKEPRLVRSSGMRRDWSFEDLR

Query:  TIREEREPSANS
        TIREE+EPS NS
Subjt:  TIREEREPSANS

A0A5A7UAS3 Uncharacterized protein1.6e-4283.04Show/hide
Query:  MSLNCLSCQLLQRTDSERHRDQKIQTYYCSDEFDSSQRSWSGNLSFRPHDRQNRGG-FRGLAENKVAPIGHRRTVSYDGKEPRLVRSSGMRRDWSFEDLR
        MSLNCLSCQLLQRTDSERHRD++IQTYY SDEFD SQRSWSGNLS     RQNRGG FRG+A+NKVAP+ HRR VS+ GKEPRLVRSSGMRRDWSFEDLR
Subjt:  MSLNCLSCQLLQRTDSERHRDQKIQTYYCSDEFDSSQRSWSGNLSFRPHDRQNRGG-FRGLAENKVAPIGHRRTVSYDGKEPRLVRSSGMRRDWSFEDLR

Query:  TIREEREPSANS
        TIREE+EPS NS
Subjt:  TIREEREPSANS

A0A6J1GL99 uncharacterized protein LOC1114549685.4e-2762.18Show/hide
Query:  MSLNCLSCQL-LQRTDSERHRDQKIQTYYCSDEFDSSQRSWSGNLSFRPHDRQNRGGFRGLAENKVAPIGHRRTVSY-------DGKEPRLVRSSGMRRD
        MSLNCLSCQL LQR+DS++  +Q     Y +D+  S  RSWSGNLSFRP  RQN  GFR   ENKVAP+GHRR  S         GKEPRL+RS+GMRRD
Subjt:  MSLNCLSCQL-LQRTDSERHRDQKIQTYYCSDEFDSSQRSWSGNLSFRPHDRQNRGGFRGLAENKVAPIGHRRTVSY-------DGKEPRLVRSSGMRRD

Query:  WSFEDLRTIREEREPSANS
        WSFEDLR IRE++E S NS
Subjt:  WSFEDLRTIREEREPSANS

A0A6J1L834 uncharacterized protein LOC1115001867.8e-2660.91Show/hide
Query:  MSLNCLSCQLLQRTDSERHRDQKIQTYYCSDEFDSSQRSWSGNLSFRPHDRQNRGGFRGLAENKVAPIGHRR-----TVSYDGKEPRLVRSSGMRRDWSF
        M+LNCLSCQLLQRTDSER  D ++Q YY S + + S RSWSGNLSFRP DR  +   R L E++  P+  RR      +S   KEP+LVRSSGMRRDWSF
Subjt:  MSLNCLSCQLLQRTDSERHRDQKIQTYYCSDEFDSSQRSWSGNLSFRPHDRQNRGGFRGLAENKVAPIGHRR-----TVSYDGKEPRLVRSSGMRRDWSF

Query:  EDLRTIREER
        EDLR IREE+
Subjt:  EDLRTIREER

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G35215.1 unknown protein1.2e-1038.89Show/hide
Query:  MSLNCLSCQLLQRTDSER----HRDQKIQTYYCSDEFDSSQRSWSGNLSFRPHDRQNRGGFRGLAENKVAPIGHRRTVSYDGKEPRLVRSSGMRRDWSFE
        MSLNCL+C +LQRTDS+R     +D   +  + +  F+   R    N S  P  R+   G R L    +   G       +  EP+LVRSSG+RRDWSFE
Subjt:  MSLNCLSCQLLQRTDSER----HRDQKIQTYYCSDEFDSSQRSWSGNLSFRPHDRQNRGGFRGLAENKVAPIGHRRTVSYDGKEPRLVRSSGMRRDWSFE

Query:  DLRTIREE
        DL+  +++
Subjt:  DLRTIREE

AT5G46770.1 unknown protein5.0e-0938.35Show/hide
Query:  MSLNCLSCQLLQRTDSERHRD------------QKIQTYYCSDEFDSSQRSWSGNLSFRPHDRQNRGGFRGLAE--NKVAPIGHRR----------TVSY
        MSLNCLSCQ L RTDS +  D              +    C +      R+WSGNLS R +++  R G   LA    KV  I H R           V  
Subjt:  MSLNCLSCQLLQRTDSERHRD------------QKIQTYYCSDEFDSSQRSWSGNLSFRPHDRQNRGGFRGLAE--NKVAPIGHRR----------TVSY

Query:  DGKEPRLVRSSGMRRDWSFEDLR---TIREERE
          ++P+LVRS+G+RR+WSFE+LR    I E+R+
Subjt:  DGKEPRLVRSSGMRRDWSFEDLR---TIREERE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTCTGAATTGCCTCTCATGTCAACTCTTACAGAGAACGGACTCCGAGAGACACCGCGACCAGAAAATCCAAACTTATTATTGTTCCGATGAGTTCGATTCG
TCGCAGAGAAGTTGGTCCGGCAACCTCTCGTTCCGGCCTCACGATCGCCAGAACAGAGGAGGGTTTCGGGGCCTGGCGGAGAACAAGGTGGCTCCGATCGGTCAC
CGCCGCACCGTGTCGTACGATGGGAAGGAGCCGAGGCTGGTTAGAAGCTCAGGGATGAGGAGGGATTGGAGCTTTGAGGATCTCAGAACTATTCGAGAGGAAAGG
GAACCATCGGCCAATTCCTGA
mRNA sequenceShow/hide mRNA sequence
GAAAAATAAAAATAAAAAACAAAATGAGGAATTATAGAGATGTTTAGATATATAATTAGAAGAATGATCCTCATCCATTAAGAAATAGAAACCCTAAAAATTAAG
CCTAAAATTAGAGAGTGGTTAAGCAATAATTCCGTTAATAGCCAACGAAATCCCCAATTTTAAAACCCTAAATTTCAAATCCTCAATGAATCCCACAAATCTCCC
CCAAAAAAAATTCCCGAAATCAAATCCCCGTCTCCGTCTCCGTCTCCGTCTTCGTCTTCCTCCTCTGTCTGTGGGCAACAAACATGAGTCTGAATTGCCTCTCAT
GTCAACTCTTACAGAGAACGGACTCCGAGAGACACCGCGACCAGAAAATCCAAACTTATTATTGTTCCGATGAGTTCGATTCGTCGCAGAGAAGTTGGTCCGGCA
ACCTCTCGTTCCGGCCTCACGATCGCCAGAACAGAGGAGGGTTTCGGGGCCTGGCGGAGAACAAGGTGGCTCCGATCGGTCACCGCCGCACCGTGTCGTACGATG
GGAAGGAGCCGAGGCTGGTTAGAAGCTCAGGGATGAGGAGGGATTGGAGCTTTGAGGATCTCAGAACTATTCGAGAGGAAAGGGAACCATCGGCCAATTCCTGAC
ATTAACTTTTTTTTCTTTTTTTTTTTTTTAATTATTTTTTATAAAAATTTTTATTTTCTTTTGGAATTTGTTTGGACGTGAATATAAATATATATATATATAATA
TACAAACCAGTAGGAATGGGGAGATTCCTTTCAAACTTTGAATATATGTTTATTATTATTATTATTTATTTGAATTTTATCACATGTTTTTATTTGGATTTCTTT
AATGTATTATTAACTACTCAATTATGAAAATCACTAAATTATAATTTTATTATGGTACTTGAATTTTCAATTTTAC
Protein sequenceShow/hide protein sequence
MSLNCLSCQLLQRTDSERHRDQKIQTYYCSDEFDSSQRSWSGNLSFRPHDRQNRGGFRGLAENKVAPIGHRRTVSYDGKEPRLVRSSGMRRDWSFEDLRTIREER
EPSANS