CuGenDBv2

Gene ID	Clc10G02405
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Photosystem II CP47 reaction center protein
Genome location	ClcChr10:2385732..2386169
RNA-Seq Expression	Clc10G02405
Synteny	Clc10G02405
Gene Ontology terms	GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0016168 - chlorophyll binding (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domains	IPR000932 - Photosystem antenna protein-like IPR036408 - Photosystem I PsaA/PsaB superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

ADM63359.1 photosystem II cp47 protein, partial [Scaevola auriculata]

1.5e-21

100

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Query:  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
        HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Subjt:  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV

ALO21850.1 PsbB [Cucurbita argyrosperma subsp. sororia]

1.5e-21

100

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Query:  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
        HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Subjt:  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV

OMP12453.1 Photosystem antenna protein-like protein [Corchorus olitorius]

1.4e-22

92.86

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Query:  LLFLWHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
        L++ WHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTT+R
Subjt:  LLFLWHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR

YP_009751764.1 photosystem II 47 kDa protein [Herpetospermum pedunculosum]

1.5e-21

100

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Query:  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
        HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Subjt:  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV

YP_009752607.1 photosystem II 47 kDa protein [Trichosanthes homophylla]

1.5e-21

100

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Query:  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
        HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Subjt:  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV

TrEMBL top hits

e value

%identity

Alignment

A0A1R3KZB8 Photosystem antenna protein-like protein

6.7e-23

92.86

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Query:  LLFLWHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
        L++ WHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTT+R
Subjt:  LLFLWHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR

A0A1S4EU40 Photosystem II CP47 reaction center protein

7.5e-22

100

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Query:  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
        HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Subjt:  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV

A0A249RZY7 Photosystem II CP47 reaction center protein

7.5e-22

100

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Query:  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
        HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Subjt:  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV

A0A6H0ERV3 Photosystem II CP47 reaction center protein

7.5e-22

100

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Query:  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
        HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Subjt:  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV

G3ETS3 Photosystem II CP47 reaction center protein

7.5e-22

100

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Query:  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
        HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Subjt:  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV

SwissProt top hits

e value

%identity

Alignment

A4QJE1 Photosystem II CP47 reaction center protein

5.9e-24

100

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Query:  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
        HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
Subjt:  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR

A4QJM5 Photosystem II CP47 reaction center protein

5.9e-24

100

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Query:  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
        HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
Subjt:  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR

A4QK44 Photosystem II CP47 reaction center protein

5.9e-24

100

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Query:  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
        HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
Subjt:  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR

P56777 Photosystem II CP47 reaction center protein

5.9e-24

100

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Query:  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
        HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
Subjt:  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR

Q7FNS4 Photosystem II CP47 reaction center protein

5.9e-24

100

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Query:  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
        HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
Subjt:  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR

Arabidopsis top hits

e value

%identity

Alignment

ATCG00680.1 photosystem II reaction center protein B

4.2e-25

100

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Query:  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
        HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
Subjt:  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR

Sequences

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CDS sequence

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ATGGGGTCATACTTGCCCGACTGCCATCATACTATGATCATATTGTTGTTCTTGTGGCATGCTTCATTTGCTTTGCTCTTCTTCTTCGGACACATTTGGCATGGTGCTAG
AACCTTGTTCAGAGATGTCTTTGCTGGGATTGACCCAGATTTGGACGCTCAAGTAGAATTTGGGGCATTCCAAAAACTTGGAGATCCAACTACAAAAAGAGTCTAG

mRNA sequence

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Protein sequence

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MGSYLPDCHHTMIILLFLWHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV

Clc10G02405 (gene) of Watermelon (cordophanus) v2 genome