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Clc10G03010 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc10G03010
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description(-)-germacrene D synthase-like
Genome locationClcChr10:3122657..3122881
RNA-Seq ExpressionClc10G03010
SyntenyClc10G03010
Gene Ontology termsGO:0016102 - diterpenoid biosynthetic process (biological process)
GO:0000287 - magnesium ion binding (molecular function)
GO:0010333 - terpene synthase activity (molecular function)
InterPro domainsIPR005630 - Terpene synthase, metal-binding domain
IPR008949 - Isoprenoid synthase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008448865.1 PREDICTED: (-)-germacrene D synthase-like [Cucumis melo]5.0e-1558.33Show/hide
Query:  MKMQAKYFFIEAKWYNDGHTPTIKEYLRVARVT-CYYLLPTFSILGMANDASIEALEWIKSDPESLIASELL
        MK QA+Y+F EAKWY + +TPTI+EYLR+ RVT CY L    S LGM N AS EA EWI+SDP++L+ S ++
Subjt:  MKMQAKYFFIEAKWYNDGHTPTIKEYLRVARVT-CYYLLPTFSILGMANDASIEALEWIKSDPESLIASELL

XP_022144020.1 (-)-germacrene D synthase-like [Momordica charantia]1.1e-1763.38Show/hide
Query:  MKMQAKYFFIEAKWYNDGHTPTIKEYLRVARVTCYYLLPTFSILGMANDASIEALEWIKSDPESLIASELL
        MK QA+Y F EAKWY+DG+ PTI+EYLRVARVTCY+L+P  S++GM + A+ EA EWI SDP+ LIAS ++
Subjt:  MKMQAKYFFIEAKWYNDGHTPTIKEYLRVARVTCYYLLPTFSILGMANDASIEALEWIKSDPESLIASELL

XP_022154019.1 (-)-germacrene D synthase-like [Momordica charantia]7.7e-1661.11Show/hide
Query:  MKMQAKYFFIEAKWYNDGHTPTIKEYLRVARVT-CYYLLPTFSILGMANDASIEALEWIKSDPESLIASELL
        MK QA+ +F EAKWY+DG+ PT++EYLRV +VT CYYL    S LGM + AS+EA EWI+SDP+SLIAS ++
Subjt:  MKMQAKYFFIEAKWYNDGHTPTIKEYLRVARVT-CYYLLPTFSILGMANDASIEALEWIKSDPESLIASELL

XP_022154020.1 (+)-gamma-cadinene synthase-like [Momordica charantia]3.5e-1663.89Show/hide
Query:  MKMQAKYFFIEAKWYNDGHTPTIKEYLRVARVT-CYYLLPTFSILGMANDASIEALEWIKSDPESLIASELL
        MK QA+ +F EAKWY+DG+TPTI+EYLRV RVT CY L    S LGM + AS+EA EWI+SDP+SLIAS ++
Subjt:  MKMQAKYFFIEAKWYNDGHTPTIKEYLRVARVT-CYYLLPTFSILGMANDASIEALEWIKSDPESLIASELL

XP_038905736.1 (-)-germacrene D synthase-like [Benincasa hispida]7.0e-2580.56Show/hide
Query:  MKMQAKYFFIEAKWYNDGHTPTIKEYLRVARVTCYYLLPTFSILGMANDASIEALEWIKSDPESLIASELLS
        MKMQA YFF EAKWYNDGHTPTI+EYLRVARVTCYYLL   S LGM NDASIEA EWIK DP+SLIAS ++S
Subjt:  MKMQAKYFFIEAKWYNDGHTPTIKEYLRVARVTCYYLLPTFSILGMANDASIEALEWIKSDPESLIASELLS

TrEMBL top hitse value%identityAlignment
A0A1S3BLL1 (-)-germacrene D synthase-like2.4e-1558.33Show/hide
Query:  MKMQAKYFFIEAKWYNDGHTPTIKEYLRVARVT-CYYLLPTFSILGMANDASIEALEWIKSDPESLIASELL
        MK QA+Y+F EAKWY + +TPTI+EYLR+ RVT CY L    S LGM N AS EA EWI+SDP++L+ S ++
Subjt:  MKMQAKYFFIEAKWYNDGHTPTIKEYLRVARVT-CYYLLPTFSILGMANDASIEALEWIKSDPESLIASELL

A0A5D3CJ95 Uncharacterized protein2.4e-1558.33Show/hide
Query:  MKMQAKYFFIEAKWYNDGHTPTIKEYLRVARVT-CYYLLPTFSILGMANDASIEALEWIKSDPESLIASELL
        MK QA+Y+F EAKWY + +TPTI+EYLR+ RVT CY L    S LGM N AS EA EWI+SDP++L+ S ++
Subjt:  MKMQAKYFFIEAKWYNDGHTPTIKEYLRVARVT-CYYLLPTFSILGMANDASIEALEWIKSDPESLIASELL

A0A6J1CQG9 (-)-germacrene D synthase-like5.2e-1863.38Show/hide
Query:  MKMQAKYFFIEAKWYNDGHTPTIKEYLRVARVTCYYLLPTFSILGMANDASIEALEWIKSDPESLIASELL
        MK QA+Y F EAKWY+DG+ PTI+EYLRVARVTCY+L+P  S++GM + A+ EA EWI SDP+ LIAS ++
Subjt:  MKMQAKYFFIEAKWYNDGHTPTIKEYLRVARVTCYYLLPTFSILGMANDASIEALEWIKSDPESLIASELL

A0A6J1DIG3 (+)-gamma-cadinene synthase-like1.7e-1663.89Show/hide
Query:  MKMQAKYFFIEAKWYNDGHTPTIKEYLRVARVT-CYYLLPTFSILGMANDASIEALEWIKSDPESLIASELL
        MK QA+ +F EAKWY+DG+TPTI+EYLRV RVT CY L    S LGM + AS+EA EWI+SDP+SLIAS ++
Subjt:  MKMQAKYFFIEAKWYNDGHTPTIKEYLRVARVT-CYYLLPTFSILGMANDASIEALEWIKSDPESLIASELL

A0A6J1DKT6 (-)-germacrene D synthase-like3.7e-1661.11Show/hide
Query:  MKMQAKYFFIEAKWYNDGHTPTIKEYLRVARVT-CYYLLPTFSILGMANDASIEALEWIKSDPESLIASELL
        MK QA+ +F EAKWY+DG+ PT++EYLRV +VT CYYL    S LGM + AS+EA EWI+SDP+SLIAS ++
Subjt:  MKMQAKYFFIEAKWYNDGHTPTIKEYLRVARVT-CYYLLPTFSILGMANDASIEALEWIKSDPESLIASELL

SwissProt top hitse value%identityAlignment
E3W208 Sesquiterpene synthase3.1e-0744.29Show/hide
Query:  MKMQAKYFFIEAKWYNDGHTPTIKEYLRVARVTC-YYLLPTFSILGMANDASIEALEWIKSDPESLIASE
        MK   + +  EAKW ++ + PT +EY+ VA VT  Y  L T S LGM   AS EA +W+ S P  + ASE
Subjt:  MKMQAKYFFIEAKWYNDGHTPTIKEYLRVARVTC-YYLLPTFSILGMANDASIEALEWIKSDPESLIASE

F6M8H4 Probable sesquiterpene synthase3.1e-0744.29Show/hide
Query:  MKMQAKYFFIEAKWYNDGHTPTIKEYLRVARVTC-YYLLPTFSILGMANDASIEALEWIKSDPESLIASE
        MK   + +  EAKW ++ + PT +EY+ VA VT  Y  L T S LGM   AS EA +W+ S P  + ASE
Subjt:  MKMQAKYFFIEAKWYNDGHTPTIKEYLRVARVTC-YYLLPTFSILGMANDASIEALEWIKSDPESLIASE

F6M8H5 Probable sesquiterpene synthase3.1e-0744.29Show/hide
Query:  MKMQAKYFFIEAKWYNDGHTPTIKEYLRVARVTC-YYLLPTFSILGMANDASIEALEWIKSDPESLIASE
        MK   + +  EAKW ++ + PT +EY+ VA VT  Y  L T S LGM   AS EA +W+ S P  + ASE
Subjt:  MKMQAKYFFIEAKWYNDGHTPTIKEYLRVARVTC-YYLLPTFSILGMANDASIEALEWIKSDPESLIASE

Q39979 Vetispiradiene synthase 2 (Fragment)8.0e-0844.44Show/hide
Query:  MKMQAKYFFIEAKWYNDGHTPTIKEYLRVARVT-CYYLLPTFSILGMANDASIEALEWIKSDPESLIASELL
        MK   + +FIEAKW+ +G+ P++ EYL  A  T  YYLL T S LGM   A+ E  EW+ ++P+ L A+  L
Subjt:  MKMQAKYFFIEAKWYNDGHTPTIKEYLRVARVT-CYYLLPTFSILGMANDASIEALEWIKSDPESLIASELL

Q6Q3H2 Valencene synthase1.1e-0941.1Show/hide
Query:  MKMQAKYFFIEAKWYNDGHTPTIKEYLRVARVTC-YYLLPTFSILGMANDASIEALEWIKSDPESLIASELLS
        MK Q + +F EAKW ++ H P  +EY+RVA  +  Y LL T S +GM   A+ EA +W+ SDP+ + +S  ++
Subjt:  MKMQAKYFFIEAKWYNDGHTPTIKEYLRVARVTC-YYLLPTFSILGMANDASIEALEWIKSDPESLIASELLS

Arabidopsis top hitse value%identityAlignment
AT1G61680.1 terpene synthase 145.5e-0432.76Show/hide
Query:  KYFFIEAKWYNDGHTPTIKEYLRVARVTC-YYLLPTFSILGMANDASIEALEWIKSDP
        K F +EAKW+N G+ PT +EY++   V+   +L+   + + +  + + E +E I+S+P
Subjt:  KYFFIEAKWYNDGHTPTIKEYLRVARVTC-YYLLPTFSILGMANDASIEALEWIKSDP

AT1G61680.2 terpene synthase 145.5e-0432.76Show/hide
Query:  KYFFIEAKWYNDGHTPTIKEYLRVARVTC-YYLLPTFSILGMANDASIEALEWIKSDP
        K F +EAKW+N G+ PT +EY++   V+   +L+   + + +  + + E +E I+S+P
Subjt:  KYFFIEAKWYNDGHTPTIKEYLRVARVTC-YYLLPTFSILGMANDASIEALEWIKSDP

AT2G24210.1 terpene synthase 107.2e-0429.23Show/hide
Query:  AKYFFIEAKWYNDGHTPTIKEYLRVARVTCYYLLPTFSI---LGMANDASIEALEWIKSDPESLI
        +K + +EAKWY  GH P ++EY++ AR++     PT  +      ++  SI+ LE +    ++++
Subjt:  AKYFFIEAKWYNDGHTPTIKEYLRVARVTCYYLLPTFSI---LGMANDASIEALEWIKSDPESLI

AT5G23960.1 terpene synthase 215.0e-0531.51Show/hide
Query:  MKMQAKYFFIEAKWYNDGHTPTIKEYLRVARVTC-YYLLPTFSILGMANDASIEALEWIKSDPESLIASELLS
        ++  A  +  EAKW    +  T  EY   A ++  YY L   + + M + A ++A EW+ S P+  +ASE++S
Subjt:  MKMQAKYFFIEAKWYNDGHTPTIKEYLRVARVTC-YYLLPTFSILGMANDASIEALEWIKSDPESLIASELLS

AT5G23960.2 terpene synthase 215.0e-0531.51Show/hide
Query:  MKMQAKYFFIEAKWYNDGHTPTIKEYLRVARVTC-YYLLPTFSILGMANDASIEALEWIKSDPESLIASELLS
        ++  A  +  EAKW    +  T  EY   A ++  YY L   + + M + A ++A EW+ S P+  +ASE++S
Subjt:  MKMQAKYFFIEAKWYNDGHTPTIKEYLRVARVTC-YYLLPTFSILGMANDASIEALEWIKSDPESLIASELLS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAATGCAGGCAAAGTATTTCTTTATTGAAGCTAAATGGTATAATGATGGCCATACACCAACAATAAAGGAGTACTTGAGAGTTGCAAGAGTTACTTGCTACTATTT
GCTTCCTACCTTTTCAATTCTTGGCATGGCAAATGATGCTTCAATTGAGGCATTAGAATGGATCAAGAGTGACCCCGAATCACTTATTGCTTCGGAGTTATTATCCGAAT
CATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAATGCAGGCAAAGTATTTCTTTATTGAAGCTAAATGGTATAATGATGGCCATACACCAACAATAAAGGAGTACTTGAGAGTTGCAAGAGTTACTTGCTACTATTT
GCTTCCTACCTTTTCAATTCTTGGCATGGCAAATGATGCTTCAATTGAGGCATTAGAATGGATCAAGAGTGACCCCGAATCACTTATTGCTTCGGAGTTATTATCCGAAT
CATGA
Protein sequenceShow/hide protein sequence
MKMQAKYFFIEAKWYNDGHTPTIKEYLRVARVTCYYLLPTFSILGMANDASIEALEWIKSDPESLIASELLSES