CuGenDBv2

Gene ID	Clc10G03055
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	LINE-1 retrotransposable element ORF2 protein
Genome location	ClcChr10:3210768..3211571
RNA-Seq Expression	Clc10G03055
Synteny	Clc10G03055
Gene Ontology terms	GO:0009987 - cellular process (biological process)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

RVW29080.1 putative ribonuclease H protein [Vitis vinifera]

5.1e-25

42.95

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Query:  MDKLRNLKQILTTFELTSGLKINLEKSSIN-----------------VENVSLSLIG-EFSYISKGGCLTLLQVVLSNLPTYYLSTFSAPISFCKEVEKI
        +D L+NLK IL  F   SGLKINLEKS+I+                 VE +S  L G + +Y+S GG +TL+Q  LS++P+Y+LS F  P+S   ++EK+
Subjt:  MDKLRNLKQILTTFELTSGLKINLEKSSIN-----------------VENVSLSLIG-EFSYISKGGCLTLLQVVLSNLPTYYLSTFSAPISFCKEVEKI

Query:  MRNFLWKRAEKSGDSHLVLWDIDTLPKSSGGLGVEKIRISNVALLSKWIWRFLKKR
         R+FLW  A +    HL+ W++ + P+  GGLG  K  + N ALL KW+WRFL++R
Subjt:  MRNFLWKRAEKSGDSHLVLWDIDTLPKSSGGLGVEKIRISNVALLSKWIWRFLKKR

RVW56231.1 putative ribonuclease H protein [Vitis vinifera]

6.0e-26

44.87

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Query:  MDKLRNLKQILTTFELTSGLKINLEKSSIN-----------------VENVSLSLIG-EFSYISKGGCLTLLQVVLSNLPTYYLSTFSAPISFCKEVEKI
        M+ L+NLK IL  F   SGLKINLEKS+I+                 VE +S  L G + +Y+S GG +TL+Q  LS++P+Y+LS F  P S   ++EK+
Subjt:  MDKLRNLKQILTTFELTSGLKINLEKSSIN-----------------VENVSLSLIG-EFSYISKGGCLTLLQVVLSNLPTYYLSTFSAPISFCKEVEKI

Query:  MRNFLWKRAEKSGDSHLVLWDIDTLPKSSGGLGVEKIRISNVALLSKWIWRFLKKR
         RNFLW  A +    HLV W++ + PK  GGLG  KI + N+ALL KW+WRF ++R
Subjt:  MRNFLWKRAEKSGDSHLVLWDIDTLPKSSGGLGVEKIRISNVALLSKWIWRFLKKR

RVW81109.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]

3.0e-25

44.23

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Query:  MDKLRNLKQILTTFELTSGLKINLEKSSIN-----------------VENVSLSLIG-EFSYISKGGCLTLLQVVLSNLPTYYLSTFSAPISFCKEVEKI
        M+ L+NLK IL  F   SGLKINLEKS+I+                 VE +S  L G + +Y+S GG + L+Q  LS++P+Y+LS F  P S   ++EK+
Subjt:  MDKLRNLKQILTTFELTSGLKINLEKSSIN-----------------VENVSLSLIG-EFSYISKGGCLTLLQVVLSNLPTYYLSTFSAPISFCKEVEKI

Query:  MRNFLWKRAEKSGDSHLVLWDIDTLPKSSGGLGVEKIRISNVALLSKWIWRFLKKR
         RNFLW  A +    HLV W++ + PK  GGLG  KI + N+ALL KW+WRF ++R
Subjt:  MRNFLWKRAEKSGDSHLVLWDIDTLPKSSGGLGVEKIRISNVALLSKWIWRFLKKR

RVW96808.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]

6.0e-26

44.87

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Query:  MDKLRNLKQILTTFELTSGLKINLEKSSIN-----------------VENVSLSLIG-EFSYISKGGCLTLLQVVLSNLPTYYLSTFSAPISFCKEVEKI
        M+ L+NLK IL  F   SGLKINLEKS+I+                 VE +S  L G + +Y+S GG +TL+Q  LS++P+Y+LS F  P S    +EK+
Subjt:  MDKLRNLKQILTTFELTSGLKINLEKSSIN-----------------VENVSLSLIG-EFSYISKGGCLTLLQVVLSNLPTYYLSTFSAPISFCKEVEKI

Query:  MRNFLWKRAEKSGDSHLVLWDIDTLPKSSGGLGVEKIRISNVALLSKWIWRFLKKR
         RNFLW  A +    HLV W++ + PK SGGLG  KI + N+ALL KW+WR  ++R
Subjt:  MRNFLWKRAEKSGDSHLVLWDIDTLPKSSGGLGVEKIRISNVALLSKWIWRFLKKR

RVX00013.1 putative ribonuclease H protein [Vitis vinifera]

2.5e-24

42.31

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Query:  MDKLRNLKQILTTFELTSGLKINLEKSSIN-----------------VENVSLSLIG-EFSYISKGGCLTLLQVVLSNLPTYYLSTFSAPISFCKEVEKI
        +D L+NLK IL  F   SGLKINLEKS+I+                 VE +S  L G + +++S GG +TL+Q  LS++P+Y+LS F  P+S   ++EK+
Subjt:  MDKLRNLKQILTTFELTSGLKINLEKSSIN-----------------VENVSLSLIG-EFSYISKGGCLTLLQVVLSNLPTYYLSTFSAPISFCKEVEKI

Query:  MRNFLWKRAEKSGDSHLVLWDIDTLPKSSGGLGVEKIRISNVALLSKWIWRFLKKR
         R+FLW    +    HL+ WD+   PK  GGLG  KI + N+ LL KW+WRF ++R
Subjt:  MRNFLWKRAEKSGDSHLVLWDIDTLPKSSGGLGVEKIRISNVALLSKWIWRFLKKR

TrEMBL top hits

e value

%identity

Alignment

A0A2N9IRE9 Uncharacterized protein

3.2e-25

39.43

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Query:  DKLRNLKQILTTFELTSGLKINLEKSSINVENVSLSLIGEFS----------------------YISKGGCLTLLQVVLSNLPTYYLSTFSAPISFCKEV
        ++L  LK ++T FE T+GL++N+ K+S+ +  +S+ L   F                       Y+SKGGCLTLL+  LSNLPT+YLS F+ P S  K +
Subjt:  DKLRNLKQILTTFELTSGLKINLEKSSINVENVSLSLIGEFS----------------------YISKGGCLTLLQVVLSNLPTYYLSTFSAPISFCKEV

Query:  EKIMRNFLWKRAEKSGDSHLVLWDIDTLPKSSGGLGVEKIRISNVALLSKWIWRF-LKKRVFGDTSVREPHGLIL
        E+I RNFLW    ++    LV WD    P + GGLGV K+ + N ALL KW+WRF ++  V+G+  +    GL +
Subjt:  EKIMRNFLWKRAEKSGDSHLVLWDIDTLPKSSGGLGVEKIRISNVALLSKWIWRF-LKKRVFGDTSVREPHGLIL

A0A438D0T1 Putative ribonuclease H protein

2.4e-25

42.95

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Query:  MDKLRNLKQILTTFELTSGLKINLEKSSIN-----------------VENVSLSLIG-EFSYISKGGCLTLLQVVLSNLPTYYLSTFSAPISFCKEVEKI
        +D L+NLK IL  F   SGLKINLEKS+I+                 VE +S  L G + +Y+S GG +TL+Q  LS++P+Y+LS F  P+S   ++EK+
Subjt:  MDKLRNLKQILTTFELTSGLKINLEKSSIN-----------------VENVSLSLIG-EFSYISKGGCLTLLQVVLSNLPTYYLSTFSAPISFCKEVEKI

Query:  MRNFLWKRAEKSGDSHLVLWDIDTLPKSSGGLGVEKIRISNVALLSKWIWRFLKKR
         R+FLW  A +    HL+ W++ + P+  GGLG  K  + N ALL KW+WRFL++R
Subjt:  MRNFLWKRAEKSGDSHLVLWDIDTLPKSSGGLGVEKIRISNVALLSKWIWRFLKKR

A0A438F8D1 Putative ribonuclease H protein

2.9e-26

44.87

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Query:  MDKLRNLKQILTTFELTSGLKINLEKSSIN-----------------VENVSLSLIG-EFSYISKGGCLTLLQVVLSNLPTYYLSTFSAPISFCKEVEKI
        M+ L+NLK IL  F   SGLKINLEKS+I+                 VE +S  L G + +Y+S GG +TL+Q  LS++P+Y+LS F  P S   ++EK+
Subjt:  MDKLRNLKQILTTFELTSGLKINLEKSSIN-----------------VENVSLSLIG-EFSYISKGGCLTLLQVVLSNLPTYYLSTFSAPISFCKEVEKI

Query:  MRNFLWKRAEKSGDSHLVLWDIDTLPKSSGGLGVEKIRISNVALLSKWIWRFLKKR
         RNFLW  A +    HLV W++ + PK  GGLG  KI + N+ALL KW+WRF ++R
Subjt:  MRNFLWKRAEKSGDSHLVLWDIDTLPKSSGGLGVEKIRISNVALLSKWIWRFLKKR

A0A438H9P5 LINE-1 retrotransposable element ORF2 protein

1.4e-25

44.23

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Query:  MDKLRNLKQILTTFELTSGLKINLEKSSIN-----------------VENVSLSLIG-EFSYISKGGCLTLLQVVLSNLPTYYLSTFSAPISFCKEVEKI
        M+ L+NLK IL  F   SGLKINLEKS+I+                 VE +S  L G + +Y+S GG + L+Q  LS++P+Y+LS F  P S   ++EK+
Subjt:  MDKLRNLKQILTTFELTSGLKINLEKSSIN-----------------VENVSLSLIG-EFSYISKGGCLTLLQVVLSNLPTYYLSTFSAPISFCKEVEKI

Query:  MRNFLWKRAEKSGDSHLVLWDIDTLPKSSGGLGVEKIRISNVALLSKWIWRFLKKR
         RNFLW  A +    HLV W++ + PK  GGLG  KI + N+ALL KW+WRF ++R
Subjt:  MRNFLWKRAEKSGDSHLVLWDIDTLPKSSGGLGVEKIRISNVALLSKWIWRFLKKR

A0A438IJB1 Transposon TX1 uncharacterized 149 kDa protein

2.9e-26

44.87

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Query:  MDKLRNLKQILTTFELTSGLKINLEKSSIN-----------------VENVSLSLIG-EFSYISKGGCLTLLQVVLSNLPTYYLSTFSAPISFCKEVEKI
        M+ L+NLK IL  F   SGLKINLEKS+I+                 VE +S  L G + +Y+S GG +TL+Q  LS++P+Y+LS F  P S    +EK+
Subjt:  MDKLRNLKQILTTFELTSGLKINLEKSSIN-----------------VENVSLSLIG-EFSYISKGGCLTLLQVVLSNLPTYYLSTFSAPISFCKEVEKI

Query:  MRNFLWKRAEKSGDSHLVLWDIDTLPKSSGGLGVEKIRISNVALLSKWIWRFLKKR
         RNFLW  A +    HLV W++ + PK SGGLG  KI + N+ALL KW+WR  ++R
Subjt:  MRNFLWKRAEKSGDSHLVLWDIDTLPKSSGGLGVEKIRISNVALLSKWIWRFLKKR

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

1.1e-11

35.29

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Query:  KINLEKSSINVENVSLSLIG-EFSYISKGGCLTLLQVVLSNLPTYYLSTFSAPISFCKEVEKIMRNFLWKRAEKSGDSHLVLWDIDTLPKSSGGLGVEKI
        +IN +     +E VS  + G     +S  G LTL + VLS++P + +ST   P S    ++++ R FLW    +    HLV W     PK  GGLGV   
Subjt:  KINLEKSSINVENVSLSLIG-EFSYISKGGCLTLLQVVLSNLPTYYLSTFSAPISFCKEVEKIMRNFLWKRAEKSGDSHLVLWDIDTLPKSSGGLGVEKI

Query:  RISNVALLSKWIWRFLKKR
        +  N AL+SK  WR L+++
Subjt:  RISNVALLSKWIWRFLKKR

Arabidopsis top hits

e value

%identity

Alignment

AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

3.2e-09

29.2

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Query:  YISKGGCLTLLQVVLSNLPTYYLSTFSAPISFCKEVEKIMRNFLWKRAEKSGDSHLVLWDIDTLPKSSGGLGVEKIR---------ISNVALLSKWIW-R
        ++S  G L L+  V+ +L  +++S F  P +  KE++ I  +FLW   E +     V W     PK  GGLG+  ++         IS    L  W+W +
Subjt:  YISKGGCLTLLQVVLSNLPTYYLSTFSAPISFCKEVEKIMRNFLWKRAEKSGDSHLVLWDIDTLPKSSGGLGVEKIR---------ISNVALLSKWIW-R

Query:  FLKKRVFGDTSVR
         LK R      V+
Subjt:  FLKKRVFGDTSVR

AT4G29090.1 Ribonuclease H-like superfamily protein

2.9e-10

33.77

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Query:  LPTYYLSTFSAPISFCKEVEKIMRNFLWKRAEKSGDSHLVLWDIDTLPKSSGGLGVEKIRISNVALLSKWIWRFLKK
        LPTY ++ F  P + CK++  ++ +F W+  +++   H   WD  +  K+ GG+G + I   N+ALL K +WR L +
Subjt:  LPTYYLSTFSAPISFCKEVEKIMRNFLWKRAEKSGDSHLVLWDIDTLPKSSGGLGVEKIRISNVALLSKWIWRFLKK

Sequences

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CDS sequence

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ATGGACAAACTTCGCAACCTCAAACAAATACTGACCACCTTTGAGTTAACTTCGGGTCTGAAGATCAACCTCGAGAAGTCCTCCATCAATGTGGAAAATGTCTCTTTATC
TCTTATTGGGGAATTCTCTTACATCTCCAAAGGTGGTTGTCTAACACTGCTCCAAGTCGTCCTTAGCAACCTCCCCACATATTACTTATCCACTTTCTCCGCCCCTATAT
CATTTTGCAAGGAGGTAGAAAAAATCATGAGAAACTTCTTATGGAAAAGAGCAGAGAAAAGTGGTGATTCACACCTTGTTCTATGGGACATTGACACATTGCCTAAATCA
TCGGGAGGCCTTGGTGTGGAGAAAATCAGAATTTCGAATGTTGCTCTCCTCAGCAAGTGGATCTGGCGGTTTCTGAAAAAGAGAGTCTTTGGCGATACTTCAGTAAGAGA
GCCCCATGGACTCATATTGCAAAGCTATAGAACCAAATGCTTGCTAATCTGTCTTGGAAGATTTCCAATGGCGAGAAGGCCCTATTCTGGTATCACATTTGGAATCCCAA
TGGGCTCCTTTTCACAGTTGCCAACAGACTTTTGGCATTATTATGAACCCCTTGATGTCAGTTAA

mRNA sequence

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Protein sequence

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MDKLRNLKQILTTFELTSGLKINLEKSSINVENVSLSLIGEFSYISKGGCLTLLQVVLSNLPTYYLSTFSAPISFCKEVEKIMRNFLWKRAEKSGDSHLVLWDIDTLPKS
SGGLGVEKIRISNVALLSKWIWRFLKKRVFGDTSVREPHGLILQSYRTKCLLICLGRFPMARRPYSGITFGIPMGSFSQLPTDFWHYYEPLDVS

Clc10G03055 (gene) of Watermelon (cordophanus) v2 genome