; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc10G03480 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc10G03480
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptiondisease resistance protein (TIR-NBS-LRR class), putative
Genome locationClcChr10:3800850..3803288
RNA-Seq ExpressionClc10G03480
SyntenyClc10G03480
Gene Ontology termsGO:0043167 - ion binding (molecular function)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsIPR032675 - Leucine-rich repeat domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EOY01217.1 LRR and NB-ARC domains-containing disease resistance protein, putative [Theobroma cacao]1.3e-1051.32Show/hide
Query:  MCKLEYLPEFLLHVTTLQYLSLQFCRNLKCLPQWIGNLTSLTKFEIAFCEKLTLLPKEICHIHGLVSLVIRGCPEL
        M KL  LP+ L HVTTL+YL +  C NLK LP+WI NLT L +FEI  C +L  L + +C ++ L  L I GCP L
Subjt:  MCKLEYLPEFLLHVTTLQYLSLQFCRNLKCLPQWIGNLTSLTKFEIAFCEKLTLLPKEICHIHGLVSLVIRGCPEL

XP_017970273.1 PREDICTED: putative disease resistance protein RGA1 [Theobroma cacao]1.6e-1152.63Show/hide
Query:  MCKLEYLPEFLLHVTTLQYLSLQFCRNLKCLPQWIGNLTSLTKFEIAFCEKLTLLPKEICHIHGLVSLVIRGCPEL
        M KL  LP+ L HVTTL+YL +  C NLK LP+WI NLT L +FEI  C +L  LP+ +C ++ L  L I GCP L
Subjt:  MCKLEYLPEFLLHVTTLQYLSLQFCRNLKCLPQWIGNLTSLTKFEIAFCEKLTLLPKEICHIHGLVSLVIRGCPEL

XP_021293332.1 putative disease resistance protein RGA1 [Herrania umbratica]2.7e-1152.63Show/hide
Query:  MCKLEYLPEFLLHVTTLQYLSLQFCRNLKCLPQWIGNLTSLTKFEIAFCEKLTLLPKEICHIHGLVSLVIRGCPEL
        M KL  LP+ L HVTTL+YL +  C NLK LP+WI NLT L +FEI  C +L  LP+ +C ++ L  L I GCP L
Subjt:  MCKLEYLPEFLLHVTTLQYLSLQFCRNLKCLPQWIGNLTSLTKFEIAFCEKLTLLPKEICHIHGLVSLVIRGCPEL

XP_022944072.1 putative disease resistance protein RGA1 isoform X1 [Cucurbita moschata]1.9e-1252.63Show/hide
Query:  KLEYLPEFLLHVTTLQYLSLQFCRNLKCLPQWIGNLTSLTKFEIAFCEKLTLLPKEICHIHGLVSLVIRGCPELGK
        KLEYLP  + HVTTLQ + +++C NLK LP+W+G+LTSL++  I  C  LT LP+ I H+  L SL I  C +LGK
Subjt:  KLEYLPEFLLHVTTLQYLSLQFCRNLKCLPQWIGNLTSLTKFEIAFCEKLTLLPKEICHIHGLVSLVIRGCPELGK

XP_023873549.1 putative disease resistance protein RGA3 [Quercus suber]6.0e-1151.35Show/hide
Query:  KLEYLPEFLLHVTTLQYLSLQFCRNLKCLPQWIGNLTSLTKFEIAFCEKLTLLPKEICHIHGLVSLVIRGCPEL
        KL  LP+ L HV T+Q L +  C +L  +P+WIGNLTSL + EI+ C  LT LP+EICH+  L  L I+ CP L
Subjt:  KLEYLPEFLLHVTTLQYLSLQFCRNLKCLPQWIGNLTSLTKFEIAFCEKLTLLPKEICHIHGLVSLVIRGCPEL

TrEMBL top hitse value%identityAlignment
A0A061EA34 LRR and NB-ARC domains-containing disease resistance protein, putative6.5e-1151.32Show/hide
Query:  MCKLEYLPEFLLHVTTLQYLSLQFCRNLKCLPQWIGNLTSLTKFEIAFCEKLTLLPKEICHIHGLVSLVIRGCPEL
        M KL  LP+ L HVTTL+YL +  C NLK LP+WI NLT L +FEI  C +L  L + +C ++ L  L I GCP L
Subjt:  MCKLEYLPEFLLHVTTLQYLSLQFCRNLKCLPQWIGNLTSLTKFEIAFCEKLTLLPKEICHIHGLVSLVIRGCPEL

A0A0A0LMP4 Rx_N domain-containing protein1.1e-1051.95Show/hide
Query:  MCKLEYLPEFLLH-VTTLQYLSLQFCRNLKCLPQWIGNLTSLTKFEIAFCEKLTLLPKEICHIHGLVSLVIRGCPEL
        + ++EYLPE   H +T+LQ L L  C NLK LP WIGNLTSLT  +I+ C+KLT+LP+EI ++  L +L I  C  L
Subjt:  MCKLEYLPEFLLH-VTTLQYLSLQFCRNLKCLPQWIGNLTSLTKFEIAFCEKLTLLPKEICHIHGLVSLVIRGCPEL

A0A6J1B1X2 putative disease resistance protein RGA11.3e-1152.63Show/hide
Query:  MCKLEYLPEFLLHVTTLQYLSLQFCRNLKCLPQWIGNLTSLTKFEIAFCEKLTLLPKEICHIHGLVSLVIRGCPEL
        M KL  LP+ L HVTTL+YL +  C NLK LP+WI NLT L +FEI  C +L  LP+ +C ++ L  L I GCP L
Subjt:  MCKLEYLPEFLLHVTTLQYLSLQFCRNLKCLPQWIGNLTSLTKFEIAFCEKLTLLPKEICHIHGLVSLVIRGCPEL

A0A6J1FNX2 putative disease resistance protein RGA48.5e-1152.7Show/hide
Query:  KLEYLPEFLLHVTTLQYLSLQFCRNLKCLPQWIGNLTSLTKFEIAFCEKLTLLPKEICHIHGLVSLVIRGCPEL
        KLEYLP  + HVTTL+ +S+  C NL  LP+WIG+ TSL    I  C KLT LP+ I H+  L  L IR CP+L
Subjt:  KLEYLPEFLLHVTTLQYLSLQFCRNLKCLPQWIGNLTSLTKFEIAFCEKLTLLPKEICHIHGLVSLVIRGCPEL

A0A6J1FUS3 putative disease resistance protein RGA1 isoform X19.1e-1352.63Show/hide
Query:  KLEYLPEFLLHVTTLQYLSLQFCRNLKCLPQWIGNLTSLTKFEIAFCEKLTLLPKEICHIHGLVSLVIRGCPELGK
        KLEYLP  + HVTTLQ + +++C NLK LP+W+G+LTSL++  I  C  LT LP+ I H+  L SL I  C +LGK
Subjt:  KLEYLPEFLLHVTTLQYLSLQFCRNLKCLPQWIGNLTSLTKFEIAFCEKLTLLPKEICHIHGLVSLVIRGCPELGK

SwissProt top hitse value%identityAlignment
Q7XA39 Putative disease resistance protein RGA46.1e-0635.53Show/hide
Query:  LEYLPEFLLHVTTLQYLSLQFCRNLKCLP-QWIGNLTSLTKFEIAFCEKLTLLPKEICHIHGLVSLVIRGCPELGK
        L+ LP  L  +  L+ L ++ C +L+  P Q +  LTSLT+  + +C+ L  LP+ + H+  L +L + GCPE+ K
Subjt:  LEYLPEFLLHVTTLQYLSLQFCRNLKCLP-QWIGNLTSLTKFEIAFCEKLTLLPKEICHIHGLVSLVIRGCPELGK

Q7XA40 Putative disease resistance protein RGA34.7e-0638.16Show/hide
Query:  LEYLPEFLLHVTTLQYLSLQFCRNLKCLP-QWIGNLTSLTKFEIAFCEKLTLLPKEICHIHGLVSLVIRGCPELGK
        L+ LP  L  +  L+ L +++C  L+ LP + +  L+SLT+  +  C  L  LP+ + H+  L SL IRGCP+L K
Subjt:  LEYLPEFLLHVTTLQYLSLQFCRNLKCLP-QWIGNLTSLTKFEIAFCEKLTLLPKEICHIHGLVSLVIRGCPELGK

Q9LVT1 Putative disease resistance protein At5g472801.1e-0430.21Show/hide
Query:  LEYLPEFLLHVTTLQYLSLQFCRNLKCLPQWIGNLTSLTKFEIAFCEKLTLLPKEICHIHGLVSLVIRGCPELGKCARRFLMSSRRIVTQQDLKSC
        L  LP  +  +T+L  +S+  C N+K LP+ I  L +L    +  C +L  LP EIC +  LV + I  C  L     +  + + R + + D++ C
Subjt:  LEYLPEFLLHVTTLQYLSLQFCRNLKCLPQWIGNLTSLTKFEIAFCEKLTLLPKEICHIHGLVSLVIRGCPELGKCARRFLMSSRRIVTQQDLKSC

Arabidopsis top hitse value%identityAlignment
AT5G17680.1 disease resistance protein (TIR-NBS-LRR class), putative1.4e-0529.11Show/hide
Query:  KLEYLPEFLLHVTTLQYLSLQFCRNLKCLPQWIGNLTSLTKFEIAFCEKLTLLPKEICHIHGLVSLVIRGCPELGKCAR
        K+E LP  +  ++ L  L +  C+ L+ LP ++G+L SL    +  C +L  LP  + ++  L +L + GC  + +  R
Subjt:  KLEYLPEFLLHVTTLQYLSLQFCRNLKCLPQWIGNLTSLTKFEIAFCEKLTLLPKEICHIHGLVSLVIRGCPELGKCAR

AT5G44510.1 target of AVRB operation13.4e-0434.29Show/hide
Query:  LPEFLLHVTTLQYLSLQFCRNLKCLPQWIGNLTSLTKFEIAFCEKLTLLPKEICHIHGLVSLVIRGCPEL
        LP  + ++T LQ L L  C +LK LP  + N  +L    +  C  L  LP  I  I  L  L +  C  L
Subjt:  LPEFLLHVTTLQYLSLQFCRNLKCLPQWIGNLTSLTKFEIAFCEKLTLLPKEICHIHGLVSLVIRGCPEL

AT5G45230.1 Disease resistance protein (TIR-NBS-LRR class) family2.0e-0432.56Show/hide
Query:  LPEFLLHVTTLQYLSLQFCRNLKCLPQWIGNLTSLTKFEIAFCEKLTLLPKEICHIHGLVSLVIRG--CPELGKCARRFLMSSRRI
        LP  + ++  L +L+L+ C+NL  LP  +G L SL + +++ C KL + P     +  L+ L++ G    EL  C+   L S RR+
Subjt:  LPEFLLHVTTLQYLSLQFCRNLKCLPQWIGNLTSLTKFEIAFCEKLTLLPKEICHIHGLVSLVIRG--CPELGKCARRFLMSSRRI

AT5G47280.1 ADR1-like 38.1e-0630.21Show/hide
Query:  LEYLPEFLLHVTTLQYLSLQFCRNLKCLPQWIGNLTSLTKFEIAFCEKLTLLPKEICHIHGLVSLVIRGCPELGKCARRFLMSSRRIVTQQDLKSC
        L  LP  +  +T+L  +S+  C N+K LP+ I  L +L    +  C +L  LP EIC +  LV + I  C  L     +  + + R + + D++ C
Subjt:  LEYLPEFLLHVTTLQYLSLQFCRNLKCLPQWIGNLTSLTKFEIAFCEKLTLLPKEICHIHGLVSLVIRGCPELGKCARRFLMSSRRIVTQQDLKSC

AT5G66910.1 Disease resistance protein (CC-NBS-LRR class) family2.0e-0436Show/hide
Query:  LEYLPEFLLHVTTLQYLSLQFCRNLKCLPQWIGNLTSLTKFEIAFCEKLTLLPKEICHIHGLVSLVIRGCPELGK
        L+ LP ++  V +L+ LS+  C  L  LP+ IGNL+ L    +  C  L+ LP+    +  L SL I  C  L K
Subjt:  LEYLPEFLLHVTTLQYLSLQFCRNLKCLPQWIGNLTSLTKFEIAFCEKLTLLPKEICHIHGLVSLVIRGCPELGK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTAAATTGGAGTATTTGCCTGAGTTTTTGCTACATGTGACAACTCTGCAATATCTTAGTCTACAGTTCTGCCGAAATTTAAAGTGCCTGCCACAATGGATTGGCAA
CCTCACCTCACTCACAAAGTTTGAGATTGCTTTTTGTGAAAAGCTAACTTTGCTACCAAAAGAGATTTGCCACATCCATGGTTTAGTATCATTAGTGATTCGGGGCTGTC
CCGAACTGGGAAAATGTGCAAGAAGGTTTTTAATGTCAAGCAGGAGAATTGTTACTCAGCAAGATTTGAAGAGTTGTCTCATTCTCATTGCAGTCCTAGTTCTTCCATTT
TATCCCTTAGTTGTTGGCAATAGACCACGACAAGGGCGAGGTTTATGTCTGCTAAGCTTCAAAACAATTTATTTTGAGGTTGAAAACTTGGAAGCAGATTCAAAAGGCAC
AAAATGGCTTCTTAATGGAGAGAAGATGATCAGCTATACAACAGATGCAGGTAATATTGTTAAGCTGCCTAAATATTTATCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTAAATTGGAGTATTTGCCTGAGTTTTTGCTACATGTGACAACTCTGCAATATCTTAGTCTACAGTTCTGCCGAAATTTAAAGTGCCTGCCACAATGGATTGGCAA
CCTCACCTCACTCACAAAGTTTGAGATTGCTTTTTGTGAAAAGCTAACTTTGCTACCAAAAGAGATTTGCCACATCCATGGTTTAGTATCATTAGTGATTCGGGGCTGTC
CCGAACTGGGAAAATGTGCAAGAAGGTTTTTAATGTCAAGCAGGAGAATTGTTACTCAGCAAGATTTGAAGAGTTGTCTCATTCTCATTGCAGTCCTAGTTCTTCCATTT
TATCCCTTAGTTGTTGGCAATAGACCACGACAAGGGCGAGGTTTATGTCTGCTAAGCTTCAAAACAATTTATTTTGAGGTTGAAAACTTGGAAGCAGATTCAAAAGGCAC
AAAATGGCTTCTTAATGGAGAGAAGATGATCAGCTATACAACAGATGCAGGTAATATTGTTAAGCTGCCTAAATATTTATCTTGA
Protein sequenceShow/hide protein sequence
MCKLEYLPEFLLHVTTLQYLSLQFCRNLKCLPQWIGNLTSLTKFEIAFCEKLTLLPKEICHIHGLVSLVIRGCPELGKCARRFLMSSRRIVTQQDLKSCLILIAVLVLPF
YPLVVGNRPRQGRGLCLLSFKTIYFEVENLEADSKGTKWLLNGEKMISYTTDAGNIVKLPKYLS