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Clc10G03700 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc10G03700
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionF-box protein SKIP23-like
Genome locationClcChr10:3969169..3969975
RNA-Seq ExpressionClc10G03700
SyntenyClc10G03700
Gene Ontology termsNA
InterPro domainsIPR005174 - Domain unknown function DUF295


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046890.1 F-box protein SKIP23-like [Cucumis melo var. makuwa]1.7e-4642.8Show/hide
Query:  MLDQETLGMTLFNPFNGSVIHVPPITIDDEPDYCP-----------------------------------SRDKRWIYHNPYWGNDFDDVNVHNDIVYAL
        +L +ETL +TLFNPFNG+ IH+PPITIDDEPDYCP                                   ++DKRWIYHN    N FDD+NV +D++Y L
Subjt:  MLDQETLGMTLFNPFNGSVIHVPPITIDDEPDYCP-----------------------------------SRDKRWIYHNPYWGNDFDDVNVHNDIVYAL

Query:  DWRMRLWI----------------------EVGSPHLSGERQL---------------TNEIPKLTKTFKFIVYKVTHQCGDG---------MKGVAMFI
        DWR+ LWI                      ++    +S +R+L                + I   T+T KFIVYKVT +C DG         + G AMFI
Subjt:  DWRMRLWI----------------------EVGSPHLSGERQL---------------TNEIPKLTKTFKFIVYKVTHQCGDG---------MKGVAMFI

Query:  GDNQSICVSTKDFPKCLPN--CYTDNCHLYRFPSFYGHQD-----VEDKSFDKHYII
        GDNQSIC ST+DFPKCLP+   +TDNCH YRFP  +GHQD     +EDKSFD+HYI+
Subjt:  GDNQSICVSTKDFPKCLPN--CYTDNCHLYRFPSFYGHQD-----VEDKSFDKHYII

KAG6577580.1 hypothetical protein SDJN03_25154, partial [Cucurbita argyrosperma subsp. sororia]3.4e-2334.9Show/hide
Query:  QETLGMTLFNPFNGSVIHVPPITIDDEPDYCPSR-----------------------------------DKRWIYHNPYWGNDFDDVNVHNDIVYALDWR
        +ETL +TLFNPF+G+VI +P I I+DE DY P R                                   DK W Y+ P     F DVNV+ D +YA    
Subjt:  QETLGMTLFNPFNGSVIHVPPITIDDEPDYCPSR-----------------------------------DKRWIYHNPYWGNDFDDVNVHNDIVYALDWR

Query:  MRLW-IEV-------GSPHLSGERQLTNEIPKLTK--------------------------TFKFIVYKVTHQCGDGMK---------GVAMFIGDNQSI
        M +W +EV        S  +      T  I  LT+                          T KF VYK+T +  +GM+         G AMFIGD+QSI
Subjt:  MRLW-IEV-------GSPHLSGERQLTNEIPKLTK--------------------------TFKFIVYKVTHQCGDGMK---------GVAMFIGDNQSI

Query:  CVSTKDFPKCLPNC--YTDNCHLYRFPSFYGHQDV---EDKSFDKHYIIIDPAQK
        CVSTKDFPKCLPNC  + + C+ Y  P+      +   EDK F  HY I DPA +
Subjt:  CVSTKDFPKCLPNC--YTDNCHLYRFPSFYGHQDV---EDKSFDKHYIIIDPAQK

KGN56200.1 hypothetical protein Csa_011053 [Cucumis sativus]1.3e-4644.49Show/hide
Query:  QETLGMTLFNPFNGSVIHVPPITIDDEPDYCP-----------------------------------SRDKRWIYHNPYWGNDFDDVNVHNDIVYALDWR
        ++TL +TLFNPFNG+VIH+PPITI DEP Y P                                   ++DKRWIYHN    N FDDVNV +DI+Y LDWR
Subjt:  QETLGMTLFNPFNGSVIHVPPITIDDEPDYCP-----------------------------------SRDKRWIYHNPYWGNDFDDVNVHNDIVYALDWR

Query:  MRLWI---EVGSPHL----------------------------------SGERQLTNEIPKLTKTFKFIVYKVTHQCGDG---------MKGVAMFIGDN
        + LWI   E  S +L                                    E Q+ NEI K T+T KFIV+KVTH+C DG         + G  MFIGDN
Subjt:  MRLWI---EVGSPHL----------------------------------SGERQLTNEIPKLTKTFKFIVYKVTHQCGDG---------MKGVAMFIGDN

Query:  QSICVSTKDFPKCLPN--CYTDNCHLYRFPSFYGHQD-----VEDKSFDKHYII
        QSICVSTKDFPKCLP+   +TDNCH + FP  +GHQD     VEDKSFD+HYI+
Subjt:  QSICVSTKDFPKCLPN--CYTDNCHLYRFPSFYGHQD-----VEDKSFDKHYII

XP_023552961.1 uncharacterized protein LOC111810486 [Cucurbita pepo subsp. pepo]3.6e-2534.9Show/hide
Query:  QETLGMTLFNPFNGSVIHVPPITIDDEPDYCPSR-----------------------------------DKRWIYHNPYWGNDFDDVNVHNDIVYALDWR
        +ETL +TLFNPF+G+VI +PPI IDDEPDY P+R                                   D  W Y+ P     F DVNV +D +YA +  
Subjt:  QETLGMTLFNPFNGSVIHVPPITIDDEPDYCPSR-----------------------------------DKRWIYHNPYWGNDFDDVNVHNDIVYALDWR

Query:  MRLW-IEV-------GSPHLSGERQLTNEIPKLTKTF--------------------------KFIVYKVTHQCGDGMK---------GVAMFIGDNQSI
        M +W +EV        S  +S  R  T  +  L +++                          KF VYK+  +C +GM+         G AMFIGD+QSI
Subjt:  MRLW-IEV-------GSPHLSGERQLTNEIPKLTKTF--------------------------KFIVYKVTHQCGDGMK---------GVAMFIGDNQSI

Query:  CVSTKDFPKCLPNC--YTDNCHLYRFPSFYGHQDV---EDKSFDKHYIIIDPAQK
        CVSTKDF KCLPNC  + + C+ Y  P+      +   EDK F  HY I DPA +
Subjt:  CVSTKDFPKCLPNC--YTDNCHLYRFPSFYGHQDV---EDKSFDKHYIIIDPAQK

XP_023553097.1 uncharacterized protein LOC111810599 [Cucurbita pepo subsp. pepo]1.2e-2334.9Show/hide
Query:  QETLGMTLFNPFNGSVIHVPPITIDDEPDYCPSR-----------------------------------DKRWIYHNPYWGNDFDDVNVHNDIVYALDWR
        +ETL +TLFNPF+G+ I +P I I+DEPDY P R                                   DK W Y+ P     F DVNV+ + +YA    
Subjt:  QETLGMTLFNPFNGSVIHVPPITIDDEPDYCPSR-----------------------------------DKRWIYHNPYWGNDFDDVNVHNDIVYALDWR

Query:  MRLW-IEV-------GSPHLSGERQLTNEIPKLTK--------------------------TFKFIVYKVTHQCGDGMK---------GVAMFIGDNQSI
        M +W +EV        S  +S     T  I  LT+                          T KF VYK+T +  +GM+         G AMFIGD+QSI
Subjt:  MRLW-IEV-------GSPHLSGERQLTNEIPKLTK--------------------------TFKFIVYKVTHQCGDGMK---------GVAMFIGDNQSI

Query:  CVSTKDFPKCLPNC--YTDNCHLYRFPSFYGHQDV---EDKSFDKHYIIIDPAQK
        CVSTKDFPKCLPNC  + + C+ Y  P+      +   EDK F  HY I DPA +
Subjt:  CVSTKDFPKCLPNC--YTDNCHLYRFPSFYGHQDV---EDKSFDKHYIIIDPAQK

TrEMBL top hitse value%identityAlignment
A0A0A0L2J8 DUF295 domain-containing protein6.2e-4744.49Show/hide
Query:  QETLGMTLFNPFNGSVIHVPPITIDDEPDYCP-----------------------------------SRDKRWIYHNPYWGNDFDDVNVHNDIVYALDWR
        ++TL +TLFNPFNG+VIH+PPITI DEP Y P                                   ++DKRWIYHN    N FDDVNV +DI+Y LDWR
Subjt:  QETLGMTLFNPFNGSVIHVPPITIDDEPDYCP-----------------------------------SRDKRWIYHNPYWGNDFDDVNVHNDIVYALDWR

Query:  MRLWI---EVGSPHL----------------------------------SGERQLTNEIPKLTKTFKFIVYKVTHQCGDG---------MKGVAMFIGDN
        + LWI   E  S +L                                    E Q+ NEI K T+T KFIV+KVTH+C DG         + G  MFIGDN
Subjt:  MRLWI---EVGSPHL----------------------------------SGERQLTNEIPKLTKTFKFIVYKVTHQCGDG---------MKGVAMFIGDN

Query:  QSICVSTKDFPKCLPN--CYTDNCHLYRFPSFYGHQD-----VEDKSFDKHYII
        QSICVSTKDFPKCLP+   +TDNCH + FP  +GHQD     VEDKSFD+HYI+
Subjt:  QSICVSTKDFPKCLPN--CYTDNCHLYRFPSFYGHQD-----VEDKSFDKHYII

A0A5A7TUR9 F-box protein SKIP23-like8.1e-4742.8Show/hide
Query:  MLDQETLGMTLFNPFNGSVIHVPPITIDDEPDYCP-----------------------------------SRDKRWIYHNPYWGNDFDDVNVHNDIVYAL
        +L +ETL +TLFNPFNG+ IH+PPITIDDEPDYCP                                   ++DKRWIYHN    N FDD+NV +D++Y L
Subjt:  MLDQETLGMTLFNPFNGSVIHVPPITIDDEPDYCP-----------------------------------SRDKRWIYHNPYWGNDFDDVNVHNDIVYAL

Query:  DWRMRLWI----------------------EVGSPHLSGERQL---------------TNEIPKLTKTFKFIVYKVTHQCGDG---------MKGVAMFI
        DWR+ LWI                      ++    +S +R+L                + I   T+T KFIVYKVT +C DG         + G AMFI
Subjt:  DWRMRLWI----------------------EVGSPHLSGERQL---------------TNEIPKLTKTFKFIVYKVTHQCGDG---------MKGVAMFI

Query:  GDNQSICVSTKDFPKCLPN--CYTDNCHLYRFPSFYGHQD-----VEDKSFDKHYII
        GDNQSIC ST+DFPKCLP+   +TDNCH YRFP  +GHQD     +EDKSFD+HYI+
Subjt:  GDNQSICVSTKDFPKCLPN--CYTDNCHLYRFPSFYGHQD-----VEDKSFDKHYII

A0A6J1E6A0 uncharacterized protein LOC1114311031.6e-2333.87Show/hide
Query:  QETLGMTLFNPFNGSVIHVPPITIDDEPDYCPSR-----------------------------------DKRWIYHNPYWGNDFDDVNVHNDIVYALDWR
        +ETL +TLFNPF+G+VI +P I I+DEPDY P R                                   DK W Y+ P     F DVNV+ D +YA    
Subjt:  QETLGMTLFNPFNGSVIHVPPITIDDEPDYCPSR-----------------------------------DKRWIYHNPYWGNDFDDVNVHNDIVYALDWR

Query:  MRLW---------------IEVGSPHLSGERQLTNEIPKLT-------------------KTFKFIVYKVTHQCGDGMK---------GVAMFIGDNQSI
        M +W               I V + H      LT     ++                   +T KF VYK+T +  +GM+         G AMFIGD+QSI
Subjt:  MRLW---------------IEVGSPHLSGERQLTNEIPKLT-------------------KTFKFIVYKVTHQCGDGMK---------GVAMFIGDNQSI

Query:  CVSTKDFPKCLPNC--YTDNCHLYRFPSFYGHQDV---EDKSFDKHYI
        CVSTKDF KCLPNC  + + C+ Y  P+      +   EDK F  HYI
Subjt:  CVSTKDFPKCLPNC--YTDNCHLYRFPSFYGHQDV---EDKSFDKHYI

A0A6J1E6C7 probable F-box protein At1g657402.1e-2335.29Show/hide
Query:  QETLGMTLFNPFNGSVIHVPPITIDDEPDYCPSR-----------------------------------DKRWIYHNPYWGNDFDDVNVHNDIVYALDWR
        +ETL +TLFNPF+G+VI +P I IDDEPDY P R                                   DK W Y  P     F D+NV +D +YA +  
Subjt:  QETLGMTLFNPFNGSVIHVPPITIDDEPDYCPSR-----------------------------------DKRWIYHNPYWGNDFDDVNVHNDIVYALDWR

Query:  MRLW-IEVG-----------------------------SPHLSGE-----RQLTNEIPKLTKTFKFIVYKVTHQCGDGM---------KGVAMFIGDNQS
        M +W +EV                              +    GE     R ++ E  +L +T KF VYK+  +C + M          G AMFIGD+QS
Subjt:  MRLW-IEVG-----------------------------SPHLSGE-----RQLTNEIPKLTKTFKFIVYKVTHQCGDGM---------KGVAMFIGDNQS

Query:  ICVSTKDFPKCLPNC-YTDNCHLYRFPSF---YGHQDVEDKSFDKHYIIIDPAQK
        ICVSTK FPKCLPNC Y  N +    P+     G  ++EDK F  HY I DPA K
Subjt:  ICVSTKDFPKCLPNC-YTDNCHLYRFPSF---YGHQDVEDKSFDKHYIIIDPAQK

A0A6J1E923 probable F-box protein At4g221657.6e-2129.9Show/hide
Query:  MLDQETLGMTLFNPFNGSVIHVPPITIDDEPDYCP-----------------------------------SRDKRWIYHNPYWGNDFDDVNVHNDIVYAL
        ++  ETLG+ LFNPF+G+VI++PP+   D+ ++ P                                   + DK W Y+ P     F+D+N+  D +YA 
Subjt:  MLDQETLGMTLFNPFNGSVIHVPPITIDDEPDYCP-----------------------------------SRDKRWIYHNPYWGNDFDDVNVHNDIVYAL

Query:  DWRMRLW-----------------------IEVG-------SPHLSGERQLTNEI----PKLTKTFKFIVYKVTHQCGDGMK---------GVAMFIGDN
        ++ + +W                       IE+G       +    GE  +   I     +  +T  F VYK+ H+  D M+         G A+FIGD+
Subjt:  DWRMRLW-----------------------IEVG-------SPHLSGERQLTNEI----PKLTKTFKFIVYKVTHQCGDGMK---------GVAMFIGDN

Query:  QSICVSTKDFPKCLPN--CYTDNCHL-YRFPSFYGHQDV-----EDKSFDKHYIIIDPAQKFAST--------------HMDHPNNMLQRF
        QSICVSTK+FP CLPN   +TDN ++        G QD+     E+ SF+  Y I DPAQK   +              ++DHPN MLQRF
Subjt:  QSICVSTKDFPKCLPN--CYTDNCHL-YRFPSFYGHQDV-----EDKSFDKHYIIIDPAQKFAST--------------HMDHPNNMLQRF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G68960.1 Protein of unknown function (DUF295)1.3e-0427.16Show/hide
Query:  YALDWRMRLWIEVGSPHLSGERQLTNEIPKLTKTFKFIVYKVTHQCG-----DGMKGVAMFIGDNQSICVSTKDFPKCLPN
        + + W +    + G     G+ +  N      KT K +V +   + G     D +  + +F+G+N+S C+S KDFP   PN
Subjt:  YALDWRMRLWIEVGSPHLSGERQLTNEIPKLTKTFKFIVYKVTHQCG-----DGMKGVAMFIGDNQSICVSTKDFPKCLPN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTGATCAAGAGACACTCGGTATGACTTTGTTTAACCCTTTTAATGGGAGTGTGATTCATGTTCCTCCCATTACTATAGATGATGAACCTGATTATTGCCCT
TCAAGGGATAAGAGGTGGATCTATCACAACCCATATTGGGGAAATGACTTTGACGATGTCAATGTTCACAATGACATAGTATATGCTTTGGACTGGCGGATGAGA
CTTTGGATTGAAGTAGGTTCACCTCACTTGAGTGGGGAAAGACAATTAACAAATGAGATTCCAAAGTTAACTAAGACATTCAAGTTTATAGTCTACAAAGTTACT
CATCAATGTGGAGATGGAATGAAGGGAGTTGCCATGTTTATTGGTGACAACCAATCCATTTGTGTGTCAACTAAAGATTTTCCCAAATGTTTACCCAATTGCTAT
ACAGATAATTGTCACTTGTATAGGTTTCCTTCTTTCTATGGACATCAAGATGTAGAAGACAAGAGCTTTGATAAACACTATATAATAATAGATCCTGCACAGAAA
TTTGCCTCCACCCATATGGATCATCCCAACAATATGCTACAAAGATTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTGATCAAGAGACACTCGGTATGACTTTGTTTAACCCTTTTAATGGGAGTGTGATTCATGTTCCTCCCATTACTATAGATGATGAACCTGATTATTGCCCT
TCAAGGGATAAGAGGTGGATCTATCACAACCCATATTGGGGAAATGACTTTGACGATGTCAATGTTCACAATGACATAGTATATGCTTTGGACTGGCGGATGAGA
CTTTGGATTGAAGTAGGTTCACCTCACTTGAGTGGGGAAAGACAATTAACAAATGAGATTCCAAAGTTAACTAAGACATTCAAGTTTATAGTCTACAAAGTTACT
CATCAATGTGGAGATGGAATGAAGGGAGTTGCCATGTTTATTGGTGACAACCAATCCATTTGTGTGTCAACTAAAGATTTTCCCAAATGTTTACCCAATTGCTAT
ACAGATAATTGTCACTTGTATAGGTTTCCTTCTTTCTATGGACATCAAGATGTAGAAGACAAGAGCTTTGATAAACACTATATAATAATAGATCCTGCACAGAAA
TTTGCCTCCACCCATATGGATCATCCCAACAATATGCTACAAAGATTTTGA
Protein sequenceShow/hide protein sequence
MLDQETLGMTLFNPFNGSVIHVPPITIDDEPDYCPSRDKRWIYHNPYWGNDFDDVNVHNDIVYALDWRMRLWIEVGSPHLSGERQLTNEIPKLTKTFKFIVYKVT
HQCGDGMKGVAMFIGDNQSICVSTKDFPKCLPNCYTDNCHLYRFPSFYGHQDVEDKSFDKHYIIIDPAQKFASTHMDHPNNMLQRF