; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc10G04010 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc10G04010
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionDNA-directed RNA polymerase III subunit rpc6-like
Genome locationClcChr10:4403173..4404521
RNA-Seq ExpressionClc10G04010
SyntenyClc10G04010
Gene Ontology termsGO:0006383 - transcription by RNA polymerase III (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsIPR007832 - RNA polymerase Rpc34
IPR016049 - RNA polymerase Rpc34-like
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK13079.1 DNA-directed RNA polymerase III subunit RPC6-like [Cucumis melo var. makuwa]7.9e-12794.24Show/hide
Query:  MSKSEGPSSLKRKRPDLSMKNSSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKMVQHYQNKGKKFYLSNDFEPAKEL
        MSKS+GPSSLKRKRPDLS KNSS G LIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQ KGLIK+VQHYQNKGKKFYLSNDFEPAKEL
Subjt:  MSKSEGPSSLKRKRPDLSMKNSSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKMVQHYQNKGKKFYLSNDFEPAKEL

Query:  TGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGAGL
        TGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQSGAFKVEL+REQIEEIVNALVLDNQV EVKSSGFGEFEFIP+GKICYKYC+QG GL
Subjt:  TGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGAGL

Query:  KGEPKTGAMTSIPCGVCPQITHCTPNGIISPTTCVYYTKWLDF
        KGEPKTGAM SIPCGVCP+ITHCTPNGIISP TCVYYTKWLDF
Subjt:  KGEPKTGAMTSIPCGVCPQITHCTPNGIISPTTCVYYTKWLDF

TYK19400.1 DNA-directed RNA polymerase III subunit rpc6-like [Cucumis melo var. makuwa]6.4e-12994.65Show/hide
Query:  MSKSEGPSSLKRKRPDLSMKNSSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKMVQHYQNKGKKFYLSNDFEPAKEL
        MSKS+GPSSLKRKRPDL  KNSSGG LIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQ KGLIK+VQHYQNKGKKFYLSNDFEPAKEL
Subjt:  MSKSEGPSSLKRKRPDLSMKNSSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKMVQHYQNKGKKFYLSNDFEPAKEL

Query:  TGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGAGL
        TGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIP+GKICYKYCTQG GL
Subjt:  TGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGAGL

Query:  KGEPKTGAMTSIPCGVCPQITHCTPNGIISPTTCVYYTKWLDF
        KGEPK GAM SIPCGVCP+IT+CTPNGIISP TCVYYTKWLDF
Subjt:  KGEPKTGAMTSIPCGVCPQITHCTPNGIISPTTCVYYTKWLDF

XP_004148278.1 DNA-directed RNA polymerase III subunit RPC6 [Cucumis sativus]2.2e-12995.06Show/hide
Query:  MSKSEGPSSLKRKRPDLSMKNSSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKMVQHYQNKGKKFYLSNDFEPAKEL
        M KSEGPSSLKRKRPDL  KNSSGG LIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQ KGLIK+VQHYQNKGKKFYLSNDFEPAKEL
Subjt:  MSKSEGPSSLKRKRPDLSMKNSSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKMVQHYQNKGKKFYLSNDFEPAKEL

Query:  TGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGAGL
        TGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIP+GKICYKYCTQG GL
Subjt:  TGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGAGL

Query:  KGEPKTGAMTSIPCGVCPQITHCTPNGIISPTTCVYYTKWLDF
        KGEPKTGAM SIPCGVCP+IT+CTPNGIISP TCVYYTKWLDF
Subjt:  KGEPKTGAMTSIPCGVCPQITHCTPNGIISPTTCVYYTKWLDF

XP_008448982.1 PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like [Cucumis melo]6.4e-12994.65Show/hide
Query:  MSKSEGPSSLKRKRPDLSMKNSSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKMVQHYQNKGKKFYLSNDFEPAKEL
        MSKS+GPSSLKRKRPDL  KNSSGG LIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQ KGLIK+VQHYQNKGKKFYLSNDFEPAKEL
Subjt:  MSKSEGPSSLKRKRPDLSMKNSSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKMVQHYQNKGKKFYLSNDFEPAKEL

Query:  TGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGAGL
        TGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIP+GKICYKYCTQG GL
Subjt:  TGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGAGL

Query:  KGEPKTGAMTSIPCGVCPQITHCTPNGIISPTTCVYYTKWLDF
        KGEPK GAM SIPCGVCP+IT+CTPNGIISP TCVYYTKWLDF
Subjt:  KGEPKTGAMTSIPCGVCPQITHCTPNGIISPTTCVYYTKWLDF

XP_038905079.1 DNA-directed RNA polymerase III subunit RPC6-like [Benincasa hispida]1.9e-12894.65Show/hide
Query:  MSKSEGPSSLKRKRPDLSMKNSSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKMVQHYQNKGKKFYLSNDFEPAKEL
        MSKSEGPSSLKRKRPDL MKNSSGG LIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQA+GL+KMVQHYQNKGKKFYLS DFEPAKEL
Subjt:  MSKSEGPSSLKRKRPDLSMKNSSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKMVQHYQNKGKKFYLSNDFEPAKEL

Query:  TGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGAGL
        TGGNWYRDGELDKDYINTLKQVCARMIQRKK++TIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQG GL
Subjt:  TGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGAGL

Query:  KGEPKTGAMTSIPCGVCPQITHCTPNGIISPTTCVYYTKWLDF
        KGEPKTGAMTSIPCGVCP+IT CT NGIISPTTCVYY KWL+F
Subjt:  KGEPKTGAMTSIPCGVCPQITHCTPNGIISPTTCVYYTKWLDF

TrEMBL top hitse value%identityAlignment
A0A0A0L5W6 Uncharacterized protein1.1e-12995.06Show/hide
Query:  MSKSEGPSSLKRKRPDLSMKNSSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKMVQHYQNKGKKFYLSNDFEPAKEL
        M KSEGPSSLKRKRPDL  KNSSGG LIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQ KGLIK+VQHYQNKGKKFYLSNDFEPAKEL
Subjt:  MSKSEGPSSLKRKRPDLSMKNSSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKMVQHYQNKGKKFYLSNDFEPAKEL

Query:  TGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGAGL
        TGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIP+GKICYKYCTQG GL
Subjt:  TGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGAGL

Query:  KGEPKTGAMTSIPCGVCPQITHCTPNGIISPTTCVYYTKWLDF
        KGEPKTGAM SIPCGVCP+IT+CTPNGIISP TCVYYTKWLDF
Subjt:  KGEPKTGAMTSIPCGVCPQITHCTPNGIISPTTCVYYTKWLDF

A0A1S3BL06 DNA-directed RNA polymerase III subunit rpc6-like3.1e-12994.65Show/hide
Query:  MSKSEGPSSLKRKRPDLSMKNSSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKMVQHYQNKGKKFYLSNDFEPAKEL
        MSKS+GPSSLKRKRPDL  KNSSGG LIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQ KGLIK+VQHYQNKGKKFYLSNDFEPAKEL
Subjt:  MSKSEGPSSLKRKRPDLSMKNSSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKMVQHYQNKGKKFYLSNDFEPAKEL

Query:  TGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGAGL
        TGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIP+GKICYKYCTQG GL
Subjt:  TGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGAGL

Query:  KGEPKTGAMTSIPCGVCPQITHCTPNGIISPTTCVYYTKWLDF
        KGEPK GAM SIPCGVCP+IT+CTPNGIISP TCVYYTKWLDF
Subjt:  KGEPKTGAMTSIPCGVCPQITHCTPNGIISPTTCVYYTKWLDF

A0A5A7UBI4 DNA-directed RNA polymerase III subunit RPC6-like3.8e-12794.24Show/hide
Query:  MSKSEGPSSLKRKRPDLSMKNSSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKMVQHYQNKGKKFYLSNDFEPAKEL
        MSKS+GPSSLKRKRPDLS KNSS G LIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQ KGLIK+VQHYQNKGKKFYLSNDFEPAKEL
Subjt:  MSKSEGPSSLKRKRPDLSMKNSSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKMVQHYQNKGKKFYLSNDFEPAKEL

Query:  TGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGAGL
        TGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQSGAFKVEL+REQIEEIVNALVLDNQV EVKSSGFGEFEFIP+GKICYKYC+QG GL
Subjt:  TGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGAGL

Query:  KGEPKTGAMTSIPCGVCPQITHCTPNGIISPTTCVYYTKWLDF
        KGEPKTGAM SIPCGVCP+ITHCTPNGIISP TCVYYTKWLDF
Subjt:  KGEPKTGAMTSIPCGVCPQITHCTPNGIISPTTCVYYTKWLDF

A0A5D3CS47 DNA-directed RNA polymerase III subunit RPC6-like3.8e-12794.24Show/hide
Query:  MSKSEGPSSLKRKRPDLSMKNSSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKMVQHYQNKGKKFYLSNDFEPAKEL
        MSKS+GPSSLKRKRPDLS KNSS G LIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQ KGLIK+VQHYQNKGKKFYLSNDFEPAKEL
Subjt:  MSKSEGPSSLKRKRPDLSMKNSSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKMVQHYQNKGKKFYLSNDFEPAKEL

Query:  TGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGAGL
        TGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQSGAFKVEL+REQIEEIVNALVLDNQV EVKSSGFGEFEFIP+GKICYKYC+QG GL
Subjt:  TGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGAGL

Query:  KGEPKTGAMTSIPCGVCPQITHCTPNGIISPTTCVYYTKWLDF
        KGEPKTGAM SIPCGVCP+ITHCTPNGIISP TCVYYTKWLDF
Subjt:  KGEPKTGAMTSIPCGVCPQITHCTPNGIISPTTCVYYTKWLDF

A0A5D3D7H7 DNA-directed RNA polymerase III subunit rpc6-like3.1e-12994.65Show/hide
Query:  MSKSEGPSSLKRKRPDLSMKNSSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKMVQHYQNKGKKFYLSNDFEPAKEL
        MSKS+GPSSLKRKRPDL  KNSSGG LIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQ KGLIK+VQHYQNKGKKFYLSNDFEPAKEL
Subjt:  MSKSEGPSSLKRKRPDLSMKNSSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKMVQHYQNKGKKFYLSNDFEPAKEL

Query:  TGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGAGL
        TGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIP+GKICYKYCTQG GL
Subjt:  TGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGAGL

Query:  KGEPKTGAMTSIPCGVCPQITHCTPNGIISPTTCVYYTKWLDF
        KGEPK GAM SIPCGVCP+IT+CTPNGIISP TCVYYTKWLDF
Subjt:  KGEPKTGAMTSIPCGVCPQITHCTPNGIISPTTCVYYTKWLDF

SwissProt top hitse value%identityAlignment
O94553 Probable DNA-directed RNA polymerase III subunit rpc63.0e-2029.49Show/hide
Query:  GQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKMVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQ
        G E+++Y  I +  + GI    +   T    SVV + LKSL++K L+K ++  +N  +K Y+  D  P+ ELTGG W+ D ELD ++I  LK+V  R + 
Subjt:  GQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKMVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQ

Query:  RKKL--------------------MTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGAGLKGEPKTGA
         K                       T   I    + +   KV+LS   +  +V+ L+ D +V E +S G   +  I V                     A
Subjt:  RKKL--------------------MTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGAGLKGEPKTGA

Query:  MTSIPCGVCPQITHCTPNGIISPTTCVYYTKWLD
         T  PCG CP    C  N  ++P TC Y  KWL+
Subjt:  MTSIPCGVCPQITHCTPNGIISPTTCVYYTKWLD

Q2T9S3 DNA-directed RNA polymerase III subunit RPC62.9e-2329.58Show/hide
Query:  QMPNDLNSKNKKVIVNLLLTSQTMSKSEGPSSLKRKRPDLSMKNSSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKM
        +MP+ + ++ + V +N LL+   +      + L  +  D S       G   QEK++Y +I    + GI + D++ ++    + + K LK+L++K LIK 
Subjt:  QMPNDLNSKNKKVIVNLLLTSQTMSKSEGPSSLKRKRPDLSMKNSSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKM

Query:  VQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIV-------ESFKQS----------GAFKVELSREQIEEI
        V+      KK Y+  + +P + +TGG WY D + + +++  L Q C + +Q K     E           SF  S          G  KVELS E IE I
Subjt:  VQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIV-------ESFKQS----------GAFKVELSREQIEEI

Query:  VNALVLDNQV-MEVKSSGFGEFEFIPVGKICYKYCTQGAGLKGEPKTGAMTSIPCGVCPQITHCTPNGIISPTTCVYYTKWLDF
        +N L+ D +V M + ++  G      VG +        A     P TG +   PCG+CP    C   G ISP+ C+Y T+WL+F
Subjt:  VNALVLDNQV-MEVKSSGFGEFEFIPVGKICYKYCTQGAGLKGEPKTGAMTSIPCGVCPQITHCTPNGIISPTTCVYYTKWLDF

Q86JM3 DNA-directed RNA polymerase III subunit rpc62.5e-2228.68Show/hide
Query:  KVIVNLLLTSQTM--SKSEGPSSLKRKRPDLSMKNSSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKMVQHYQNKGK
        KVI NL+   + M    S+  +S K   P+   K     GL  ++ ++Y LI +  + G  T ++K  + + +  +TK LK+L+++ LIK V+  Q+  K
Subjt:  KVIVNLLLTSQTM--SKSEGPSSLKRKRPDLSMKNSSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKMVQHYQNKGK

Query:  KFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQ--SGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFI
        K Y+  + EP++E+TGG  Y D   D  YI  +K      +  K  + +  I+   ++    A    L  E I+ +VN ++ D  + E++ +  G     
Subjt:  KFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQ--SGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFI

Query:  PVGKICYKYCTQGAGLKGEPKTGAMTSIPCGVCPQITHCTPNGIISPTTCVYYTKWLD
          G I YK        K         ++PCG CP    C+ NG++SP  CVY+ ++L+
Subjt:  PVGKICYKYCTQGAGLKGEPKTGAMTSIPCGVCPQITHCTPNGIISPTTCVYYTKWLD

Q921X6 DNA-directed RNA polymerase III subunit RPC62.2e-2329.58Show/hide
Query:  QMPNDLNSKNKKVIVNLLLTSQTMSKSEGPSSLKRKRPDLSMKNSSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKM
        +MP+ + ++ + V +N LL+   +      + L  +  D S       G   QEK++Y +I    + GI + D++ ++    + + K LK+L++K LIK 
Subjt:  QMPNDLNSKNKKVIVNLLLTSQTMSKSEGPSSLKRKRPDLSMKNSSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKM

Query:  VQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEG----IVE---SFKQS----------GAFKVELSREQIEEI
        V+      KK Y+  + +P + +TGG WY D + + +++  L Q C + +Q K     E     +++   SF  S          G  KVELS E IE I
Subjt:  VQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEG----IVE---SFKQS----------GAFKVELSREQIEEI

Query:  VNALVLDNQV-MEVKSSGFGEFEFIPVGKICYKYCTQGAGLKGEPKTGAMTSIPCGVCPQITHCTPNGIISPTTCVYYTKWLDF
        +N L+ D +V M + ++  G      VG +        A     P TG + + PCG+CP    C   G ISP+ C+Y T+WL+F
Subjt:  VNALVLDNQV-MEVKSSGFGEFEFIPVGKICYKYCTQGAGLKGEPKTGAMTSIPCGVCPQITHCTPNGIISPTTCVYYTKWLDF

Q9H1D9 DNA-directed RNA polymerase III subunit RPC64.9e-2329.58Show/hide
Query:  QMPNDLNSKNKKVIVNLLLTSQTMSKSEGPSSLKRKRPDLSMKNSSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKM
        +MP+ + ++ + V +N LL+   +      + L  +  D S       G   QEK++Y +I    + GI + D++ ++    + + K LK+L++K LIK 
Subjt:  QMPNDLNSKNKKVIVNLLLTSQTMSKSEGPSSLKRKRPDLSMKNSSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKM

Query:  VQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIV-------ESFKQS----------GAFKVELSREQIEEI
        V+      KK Y+  + +P + +TGG WY D + + +++  L Q C + +Q K     E           SF  S          G  KVELS E IE I
Subjt:  VQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIV-------ESFKQS----------GAFKVELSREQIEEI

Query:  VNALVLDNQV-MEVKSSGFGEFEFIPVGKICYKYCTQGAGLKGEPKTGAMTSIPCGVCPQITHCTPNGIISPTTCVYYTKWLDF
        +N L+ D +V M + ++  G      VG +        A     P TG +   PCG+CP    C   G ISP+ C+Y T+WL+F
Subjt:  VNALVLDNQV-MEVKSSGFGEFEFIPVGKICYKYCTQGAGLKGEPKTGAMTSIPCGVCPQITHCTPNGIISPTTCVYYTKWLDF

Arabidopsis top hitse value%identityAlignment
AT5G23710.1 DNA binding;DNA-directed RNA polymerases4.0e-5247.03Show/hide
Query:  KRKRPDLSMKNSSGGGL-IGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKMVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDG
        KRKRPD     SSGG L    EK L DLI   Q  G   F++KRE     ++VT+ + SL+ K LIK V +  NKG K YL+ +FEP  ELTGG WY DG
Subjt:  KRKRPDLSMKNSSGGGL-IGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKMVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDG

Query:  ELDKDYINTLKQVCARMIQ--RKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGAGLKGEPKTG
         LD   I  LK  C  +++  R++++T+E +   F +    + +LS +Q +EI+  L+LDN +MEVKS+G  EF    +G++CY+   +  G  GEP+ G
Subjt:  ELDKDYINTLKQVCARMIQ--RKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGAGLKGEPKTG

Query:  AMTSIPCGVCPQITHCTPNGIISPTTCVYYTKWLDF
        A  SIPCGVCP I  C+P+G+ISPTTCVY+ KWLDF
Subjt:  AMTSIPCGVCPQITHCTPNGIISPTTCVYYTKWLDF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGCAAATGCCAAATGATCTGAATTCTAAAAATAAAAAGGTAATAGTAAACCTTTTGCTTACCTCACAAACAATGAGTAAATCAGAAGGACCATCATCACTCAAGAG
AAAAAGGCCAGATTTGAGCATGAAGAATAGCTCTGGAGGAGGTCTAATTGGGCAAGAAAAAGTGCTCTATGACCTTATTTGCAGCAAGCAAAGCATGGGGATTTGCACAT
TCGACATGAAAAGAGAAACAAAGTTTGCTGAAAGTGTTGTAACAAAATCCCTCAAGTCCCTTCAAGCCAAAGGCCTGATAAAGATGGTTCAACACTATCAAAACAAAGGC
AAGAAGTTCTACCTGTCAAACGACTTCGAACCAGCTAAGGAATTAACCGGCGGTAATTGGTATCGTGACGGGGAGCTCGACAAAGACTACATCAATACTCTCAAACAAGT
TTGTGCAAGAATGATACAGAGGAAGAAGTTGATGACCATTGAAGGAATTGTGGAGTCTTTCAAACAGAGTGGAGCTTTCAAAGTAGAGTTGTCTAGAGAGCAAATTGAAG
AGATTGTAAATGCTTTGGTGTTGGACAATCAAGTTATGGAGGTGAAGAGCTCTGGATTTGGAGAATTTGAATTTATTCCTGTTGGGAAGATTTGTTATAAGTATTGTACT
CAAGGAGCAGGCCTCAAAGGAGAGCCCAAAACAGGGGCAATGACTTCCATTCCTTGTGGAGTCTGTCCACAGATCACTCATTGTACTCCAAATGGTATCATTTCTCCCAC
CACTTGTGTGTATTATACTAAGTGGTTAGATTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATGCAAATGCCAAATGATCTGAATTCTAAAAATAAAAAGGTAATAGTAAACCTTTTGCTTACCTCACAAACAATGAGTAAATCAGAAGGACCATCATCACTCAAGAG
AAAAAGGCCAGATTTGAGCATGAAGAATAGCTCTGGAGGAGGTCTAATTGGGCAAGAAAAAGTGCTCTATGACCTTATTTGCAGCAAGCAAAGCATGGGGATTTGCACAT
TCGACATGAAAAGAGAAACAAAGTTTGCTGAAAGTGTTGTAACAAAATCCCTCAAGTCCCTTCAAGCCAAAGGCCTGATAAAGATGGTTCAACACTATCAAAACAAAGGC
AAGAAGTTCTACCTGTCAAACGACTTCGAACCAGCTAAGGAATTAACCGGCGGTAATTGGTATCGTGACGGGGAGCTCGACAAAGACTACATCAATACTCTCAAACAAGT
TTGTGCAAGAATGATACAGAGGAAGAAGTTGATGACCATTGAAGGAATTGTGGAGTCTTTCAAACAGAGTGGAGCTTTCAAAGTAGAGTTGTCTAGAGAGCAAATTGAAG
AGATTGTAAATGCTTTGGTGTTGGACAATCAAGTTATGGAGGTGAAGAGCTCTGGATTTGGAGAATTTGAATTTATTCCTGTTGGGAAGATTTGTTATAAGTATTGTACT
CAAGGAGCAGGCCTCAAAGGAGAGCCCAAAACAGGGGCAATGACTTCCATTCCTTGTGGAGTCTGTCCACAGATCACTCATTGTACTCCAAATGGTATCATTTCTCCCAC
CACTTGTGTGTATTATACTAAGTGGTTAGATTTTTAAGTTGAACCATTTTGAAGATGTTATACATAACATGCATATATATTTAAGTTGTTCCGAGTTGTAGATTGAGCGT
TGATAATATTACTATGCTCGATAGAGCAAAAAGTATATAATAGGGTGTTTAGAGGATTGAAAAGGAACACTTATGAGAATTGGCTGACTCACAATAAAATTTTTGGATAT
TTTGGATA
Protein sequenceShow/hide protein sequence
MMQMPNDLNSKNKKVIVNLLLTSQTMSKSEGPSSLKRKRPDLSMKNSSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKMVQHYQNKG
KKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPVGKICYKYCT
QGAGLKGEPKTGAMTSIPCGVCPQITHCTPNGIISPTTCVYYTKWLDF