; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc10G04340 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc10G04340
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptiongibberellin-regulated protein 14-like
Genome locationClcChr10:4854582..4855684
RNA-Seq ExpressionClc10G04340
SyntenyClc10G04340
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065729.1 extensin-like [Cucumis melo var. makuwa]8.1e-6878.61Show/hide
Query:  MDKFALFTVLVLLAPFTGVVFGYDSPAAAPKPTKTAHSPSPAHSPAVSPPSHSASPSKSPTVSPPVTTPASSPALATPPSVAPPKAPASAPVSSPAASPV
        M  FALFTVL  L+PF G+VF YDSPAA+PKP KTAHSPSPAHSP VSPPS S SPSKSPT SPP+ TP  SPALATPPSVAP KAPA+ P+SSP     
Subjt:  MDKFALFTVLVLLAPFTGVVFGYDSPAAAPKPTKTAHSPSPAHSPAVSPPSHSASPSKSPTVSPPVTTPASSPALATPPSVAPPKAPASAPVSSPAASPV

Query:  GSENSPISSPPSPPSFDASPVATPVGAPVEPEIPANPISGGSPVGTPSIFPSSSSPPMSTPASLAPETAERPGNHASALGKYNIGVEVILSGLSIWAAWA
         SENSP+SSPPSP  FDAS    PVGAPVEPEIPANPISGGSPVGTPSIFPSSSSPPM+TP +LAPETAERPGN ASA G+Y IGVEV+LSGLSIWAAWA
Subjt:  GSENSPISSPPSPPSFDASPVATPVGAPVEPEIPANPISGGSPVGTPSIFPSSSSPPMSTPASLAPETAERPGNHASALGKYNIGVEVILSGLSIWAAWA

Query:  F
        F
Subjt:  F

XP_011652729.1 extensin [Cucumis sativus]1.5e-6678.71Show/hide
Query:  MDKFALF-TVLVLLAPFTGVVFGYDSPAAAPKPTKTAHSPSPAHSPAVSPPSHSASPSKSPTVSPPVTTPASSPALATPPSVAPPKAPASAPVSSPAASP
        M KFALF T+L L +PF G+VF  DSPAA+PKP KT HSPSPAHSP VSPPSH+ SPSKSP  SPPV TP  SPALATPPSVAP KAPA+ P+SSP    
Subjt:  MDKFALF-TVLVLLAPFTGVVFGYDSPAAAPKPTKTAHSPSPAHSPAVSPPSHSASPSKSPTVSPPVTTPASSPALATPPSVAPPKAPASAPVSSPAASP

Query:  VGSENSPISSPPSPPSFDASPVATPVGAPVEPEIPANPISGGSPVGTPSIFPSSSSPPMSTPASLAPETAERPGNHASALGKYNIGVEVILSGLSIWAAW
          SENSP+SSPPSP  FDAS    PVGAPVEPEIPANPISGGSPVGTPSIFPSSSSPPM+TP SLAPETAERPGN ASA GKY IGVEVILSGLSIWAAW
Subjt:  VGSENSPISSPPSPPSFDASPVATPVGAPVEPEIPANPISGGSPVGTPSIFPSSSSPPMSTPASLAPETAERPGNHASALGKYNIGVEVILSGLSIWAAW

Query:  AF
        AF
Subjt:  AF

XP_022932347.1 gibberellin-regulated protein 14-like [Cucurbita moschata]7.8e-7181.09Show/hide
Query:  MDKFALFTVLVLLAPFTGVVFGYDSPAAAPKPTKTAHSPSPAHSPAVSPPSHSASPSKSPTVSPPVTTPASSPALATPPSVAPPKAPASAPVSSPAASPV
        M+KFALFTVL+L + FT VV GYDSPAAAPKPTKTAHSPSPAHSP VSPP+HSASP  SPT SPP  TPA SP+LATPP V+PPKAPA+APVSSPAASPV
Subjt:  MDKFALFTVLVLLAPFTGVVFGYDSPAAAPKPTKTAHSPSPAHSPAVSPPSHSASPSKSPTVSPPVTTPASSPALATPPSVAPPKAPASAPVSSPAASPV

Query:  GSENSPISSPPSPPSFDASPVATPVGAPVEPEIPANPISGGSPVGTPSIFPSSSSPPMSTPASLAPETAERPGNHASALGKYNIGVEVILSGLSIWAAWA
         S  SPI SPPSP   DASPV  PVGAPVEPEIPANPI+GG+PV TPSIFPSSSSPPMSTPASLAPETAE PG  ASA GKY IG EVILSGLSIWA WA
Subjt:  GSENSPISSPPSPPSFDASPVATPVGAPVEPEIPANPISGGSPVGTPSIFPSSSSPPMSTPASLAPETAERPGNHASALGKYNIGVEVILSGLSIWAAWA

Query:  F
        F
Subjt:  F

XP_023552940.1 gibberellin-regulated protein 14-like [Cucurbita pepo subsp. pepo]6.2e-6879.1Show/hide
Query:  MDKFALFTVLVLLAPFTGVVFGYDSPAAAPKPTKTAHSPSPAHSPAVSPPSHSASPSKSPTVSPPVTTPASSPALATPPSVAPPKAPASAPVSSPAASPV
        M+KF LFTVL+L + FT VVFGYDSPAAAPKPTKTAHSPSPAHSP VSPP+HSASP  SPT SPP  TPA SP+LATPP V+PPKAPA+APVSSPAASPV
Subjt:  MDKFALFTVLVLLAPFTGVVFGYDSPAAAPKPTKTAHSPSPAHSPAVSPPSHSASPSKSPTVSPPVTTPASSPALATPPSVAPPKAPASAPVSSPAASPV

Query:  GSENSPISSPPSPPSFDASPVATPVGAPVEPEIPANPISGGSPVGTPSIFPSSSSPPMSTPASLAPETAERPGNHASALGKYNIGVEVILSGLSIWAAWA
         S      SPPSP   DASPV  PVGAPVEPEIPANPI+GG+PV TPSIFPSSSSPPMSTPASLAPETAE PG  ASA GKY IG EVILSGLS+WA WA
Subjt:  GSENSPISSPPSPPSFDASPVATPVGAPVEPEIPANPISGGSPVGTPSIFPSSSSPPMSTPASLAPETAERPGNHASALGKYNIGVEVILSGLSIWAAWA

Query:  F
        F
Subjt:  F

XP_038904208.1 calphotin-like [Benincasa hispida]6.0e-7987.56Show/hide
Query:  MDKFALFTVLVLLAPFTGVVFGYDSPAAAPKPTKTAHSPSPAHSPAVSPPSHSASPSKSPTVSPPVTTPASSPALATPPSVAPPKAPASAPVSSPAASPV
        MDKFALFTVL+L +PFTGVVFGYDSPAAAPKPTKTAHSPSPAHSP VSPPS SASP K P  SPP  TPA SPA ATPPSVAPPKAPASAPVSSPA SPV
Subjt:  MDKFALFTVLVLLAPFTGVVFGYDSPAAAPKPTKTAHSPSPAHSPAVSPPSHSASPSKSPTVSPPVTTPASSPALATPPSVAPPKAPASAPVSSPAASPV

Query:  GSENSPISSPPSPPSFDASPVATPVGAPVEPEIPANPISGGSPVGTPSIFPSSSSPPMSTPASLAPETAERPGNHASALGKYNIGVEVILSGLSIWAAWA
         SE SP+SSPPSPP  DASPVATPVG PVEPEIPANPISGG+PVGTPSIFPSSSSPPMSTPASLAPETAERPGN ASA GK  IGVEVILSGLSIWAAWA
Subjt:  GSENSPISSPPSPPSFDASPVATPVGAPVEPEIPANPISGGSPVGTPSIFPSSSSPPMSTPASLAPETAERPGNHASALGKYNIGVEVILSGLSIWAAWA

Query:  F
        F
Subjt:  F

TrEMBL top hitse value%identityAlignment
A0A0A0L269 Lipid binding protein7.4e-6778.71Show/hide
Query:  MDKFALF-TVLVLLAPFTGVVFGYDSPAAAPKPTKTAHSPSPAHSPAVSPPSHSASPSKSPTVSPPVTTPASSPALATPPSVAPPKAPASAPVSSPAASP
        M KFALF T+L L +PF G+VF  DSPAA+PKP KT HSPSPAHSP VSPPSH+ SPSKSP  SPPV TP  SPALATPPSVAP KAPA+ P+SSP    
Subjt:  MDKFALF-TVLVLLAPFTGVVFGYDSPAAAPKPTKTAHSPSPAHSPAVSPPSHSASPSKSPTVSPPVTTPASSPALATPPSVAPPKAPASAPVSSPAASP

Query:  VGSENSPISSPPSPPSFDASPVATPVGAPVEPEIPANPISGGSPVGTPSIFPSSSSPPMSTPASLAPETAERPGNHASALGKYNIGVEVILSGLSIWAAW
          SENSP+SSPPSP  FDAS    PVGAPVEPEIPANPISGGSPVGTPSIFPSSSSPPM+TP SLAPETAERPGN ASA GKY IGVEVILSGLSIWAAW
Subjt:  VGSENSPISSPPSPPSFDASPVATPVGAPVEPEIPANPISGGSPVGTPSIFPSSSSPPMSTPASLAPETAERPGNHASALGKYNIGVEVILSGLSIWAAW

Query:  AF
        AF
Subjt:  AF

A0A5A7VJY8 Extensin-like3.9e-6878.61Show/hide
Query:  MDKFALFTVLVLLAPFTGVVFGYDSPAAAPKPTKTAHSPSPAHSPAVSPPSHSASPSKSPTVSPPVTTPASSPALATPPSVAPPKAPASAPVSSPAASPV
        M  FALFTVL  L+PF G+VF YDSPAA+PKP KTAHSPSPAHSP VSPPS S SPSKSPT SPP+ TP  SPALATPPSVAP KAPA+ P+SSP     
Subjt:  MDKFALFTVLVLLAPFTGVVFGYDSPAAAPKPTKTAHSPSPAHSPAVSPPSHSASPSKSPTVSPPVTTPASSPALATPPSVAPPKAPASAPVSSPAASPV

Query:  GSENSPISSPPSPPSFDASPVATPVGAPVEPEIPANPISGGSPVGTPSIFPSSSSPPMSTPASLAPETAERPGNHASALGKYNIGVEVILSGLSIWAAWA
         SENSP+SSPPSP  FDAS    PVGAPVEPEIPANPISGGSPVGTPSIFPSSSSPPM+TP +LAPETAERPGN ASA G+Y IGVEV+LSGLSIWAAWA
Subjt:  GSENSPISSPPSPPSFDASPVATPVGAPVEPEIPANPISGGSPVGTPSIFPSSSSPPMSTPASLAPETAERPGNHASALGKYNIGVEVILSGLSIWAAWA

Query:  F
        F
Subjt:  F

A0A6J1DWL9 classical arabinogalactan protein 4-like7.7e-6475.24Show/hide
Query:  MDKFALFTVLVLLAPFTGVVFGYDSPAAAPKPTKTAHSPSPAHSPAVSPPSHSASPSKSPTVSPPVTTPASSPALATPPSVAPPKAPASAPVSSPAASPV
        M+K A  TVLVL APFTGVV  YD+PA +PKPTKT HSP P HSPAVS PSHSASPSKSP  SPP TTP  SPAL+TPP+ A P+APA+AP SSP ASPV
Subjt:  MDKFALFTVLVLLAPFTGVVFGYDSPAAAPKPTKTAHSPSPAHSPAVSPPSHSASPSKSPTVSPPVTTPASSPALATPPSVAPPKAPASAPVSSPAASPV

Query:  GSENSPISSPPSPPSFDASPVA----TPVGAPVEPEIPANPISGGSPVGTPSIFPSSSSPPMSTPASLAPETAERPGNHASAL-GKYNIGVEVILSGLSI
        GSE SP+SSPPSPP   ASPV+    TP G+P EPEIPANPI+GGSPV TPSIFPSSSSPPMS+P SLAPETAERPGN ASA   KY IG EVILSG+SI
Subjt:  GSENSPISSPPSPPSFDASPVA----TPVGAPVEPEIPANPISGGSPVGTPSIFPSSSSPPMSTPASLAPETAERPGNHASAL-GKYNIGVEVILSGLSI

Query:  WAAWAF
        WAAWAF
Subjt:  WAAWAF

A0A6J1EWE6 gibberellin-regulated protein 14-like3.8e-7181.09Show/hide
Query:  MDKFALFTVLVLLAPFTGVVFGYDSPAAAPKPTKTAHSPSPAHSPAVSPPSHSASPSKSPTVSPPVTTPASSPALATPPSVAPPKAPASAPVSSPAASPV
        M+KFALFTVL+L + FT VV GYDSPAAAPKPTKTAHSPSPAHSP VSPP+HSASP  SPT SPP  TPA SP+LATPP V+PPKAPA+APVSSPAASPV
Subjt:  MDKFALFTVLVLLAPFTGVVFGYDSPAAAPKPTKTAHSPSPAHSPAVSPPSHSASPSKSPTVSPPVTTPASSPALATPPSVAPPKAPASAPVSSPAASPV

Query:  GSENSPISSPPSPPSFDASPVATPVGAPVEPEIPANPISGGSPVGTPSIFPSSSSPPMSTPASLAPETAERPGNHASALGKYNIGVEVILSGLSIWAAWA
         S  SPI SPPSP   DASPV  PVGAPVEPEIPANPI+GG+PV TPSIFPSSSSPPMSTPASLAPETAE PG  ASA GKY IG EVILSGLSIWA WA
Subjt:  GSENSPISSPPSPPSFDASPVATPVGAPVEPEIPANPISGGSPVGTPSIFPSSSSPPMSTPASLAPETAERPGNHASALGKYNIGVEVILSGLSIWAAWA

Query:  F
        F
Subjt:  F

A0A6J1L107 gibberellin-regulated protein 14-like1.7e-6677.11Show/hide
Query:  MDKFALFTVLVLLAPFTGVVFGYDSPAAAPKPTKTAHSPSPAHSPAVSPPSHSASPSKSPTVSPPVTTPASSPALATPPSVAPPKAPASAPVSSPAASPV
        M+ FALFTVL+L + FT VV  YDS AAAPKPTKTA+SPSPAHSP  SPPSHSASP  SPT SPP  TPA SP+L TPP V+PPK PA+APVSSPAASPV
Subjt:  MDKFALFTVLVLLAPFTGVVFGYDSPAAAPKPTKTAHSPSPAHSPAVSPPSHSASPSKSPTVSPPVTTPASSPALATPPSVAPPKAPASAPVSSPAASPV

Query:  GSENSPISSPPSPPSFDASPVATPVGAPVEPEIPANPISGGSPVGTPSIFPSSSSPPMSTPASLAPETAERPGNHASALGKYNIGVEVILSGLSIWAAWA
         S  SP+ SPPSP   DASPV  PVGAPVEPEIPANPI+GG+PV TPSIFPSSSSPPMSTPASLAPETAE PG  AS  GKY IG EVILSGLSIWA WA
Subjt:  GSENSPISSPPSPPSFDASPVATPVGAPVEPEIPANPISGGSPVGTPSIFPSSSSPPMSTPASLAPETAERPGNHASALGKYNIGVEVILSGLSIWAAWA

Query:  F
        F
Subjt:  F

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G37450.1 arabinogalactan protein 188.8e-0436.67Show/hide
Query:  PVTTPASSPALATPPSVAPPKAPA-SAPVSSPAASPVGSENSPISSPPSP-PSFDASPVATPVGAPVEPEIPANPISGGSPVGTPSI-FPSSSSPPMSTP
        P+++P  SP   + P+ +P K+PA ++P ++PA +P  S +SP+ SP SP P  ++SP  TPV     P +PA  +S  SPV +P +  P + SPP    
Subjt:  PVTTPASSPALATPPSVAPPKAPA-SAPVSSPAASPVGSENSPISSPPSP-PSFDASPVATPVGAPVEPEIPANPISGGSPVGTPSI-FPSSSSPPMSTP

Query:  ASLAPETAERPGNHASALGK
        A +A   A  P  H     K
Subjt:  ASLAPETAERPGNHASALGK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAAATTTGCTCTGTTTACTGTTCTGGTTTTGCTTGCGCCATTCACCGGCGTCGTTTTCGGTTACGATTCGCCGGCCGCCGCTCCAAAACCCACTAAAACAGCTCA
TTCTCCATCTCCGGCGCATTCTCCTGCGGTTTCGCCGCCGAGTCACTCGGCATCTCCGTCGAAGTCTCCTACTGTTTCTCCACCGGTGACAACTCCGGCTAGTTCTCCGG
CATTGGCTACCCCACCATCTGTAGCGCCCCCGAAGGCTCCGGCTTCGGCGCCGGTTTCTTCGCCGGCGGCAAGTCCGGTAGGGAGTGAAAATTCGCCGATTTCGTCCCCG
CCGTCTCCTCCGTCTTTCGATGCTTCTCCGGTGGCTACGCCGGTTGGGGCTCCAGTGGAACCAGAAATTCCTGCAAATCCGATCTCGGGAGGGTCTCCGGTGGGGACGCC
GTCGATATTCCCGTCGAGTAGCAGCCCGCCAATGTCGACTCCGGCGAGCCTAGCACCGGAAACGGCGGAGAGGCCTGGAAACCACGCGTCGGCGCTAGGGAAGTACAATA
TCGGGGTGGAGGTTATTTTAAGTGGGCTTTCTATTTGGGCCGCTTGGGCCTTTTGA
mRNA sequenceShow/hide mRNA sequence
CGACTAGTTTACCCGTGATAGCCGGTCCCCTGTCCCCAACGGTCACTTTTTCCTTTCCGTCGTCTTCTTCAGTTTTTTCCTCTAATCAACTAATAACGTTCACTTTTCCT
CAAACTTTTCCCTTTATATATATATATATATTTCACCATTCACATTTCAGGTTCATTCCAAATTTCGATAACTTCATAGTTCCGACCGCCGGCTGAGGAAACACAGAGAG
AAATCCCCGGCTGAGAGCATGGACAAATTTGCTCTGTTTACTGTTCTGGTTTTGCTTGCGCCATTCACCGGCGTCGTTTTCGGTTACGATTCGCCGGCCGCCGCTCCAAA
ACCCACTAAAACAGCTCATTCTCCATCTCCGGCGCATTCTCCTGCGGTTTCGCCGCCGAGTCACTCGGCATCTCCGTCGAAGTCTCCTACTGTTTCTCCACCGGTGACAA
CTCCGGCTAGTTCTCCGGCATTGGCTACCCCACCATCTGTAGCGCCCCCGAAGGCTCCGGCTTCGGCGCCGGTTTCTTCGCCGGCGGCAAGTCCGGTAGGGAGTGAAAAT
TCGCCGATTTCGTCCCCGCCGTCTCCTCCGTCTTTCGATGCTTCTCCGGTGGCTACGCCGGTTGGGGCTCCAGTGGAACCAGAAATTCCTGCAAATCCGATCTCGGGAGG
GTCTCCGGTGGGGACGCCGTCGATATTCCCGTCGAGTAGCAGCCCGCCAATGTCGACTCCGGCGAGCCTAGCACCGGAAACGGCGGAGAGGCCTGGAAACCACGCGTCGG
CGCTAGGGAAGTACAATATCGGGGTGGAGGTTATTTTAAGTGGGCTTTCTATTTGGGCCGCTTGGGCCTTTTGAAATTAGGCCCAAATGTTGAATTTTTTGTGGCAGCTG
TTTTTGAACATTTGTTTGAGATTATTGTATTCTTTTTTGACAGAATATGTGGGATTCTTCTTTTTATTCAATTTTATTATCTGAATATAATGTTTTAGGATATTTAAATA
AGTTTATTGGATTGTGTAAATAATTGCAATTCTGTGCTCCTTCTCTTTTTAGATAAAAGAGATATAAATAAAAATAAAAAAAGAAAGAAAGTGCTTATAGAAGGAAAAGT
TTA
Protein sequenceShow/hide protein sequence
MDKFALFTVLVLLAPFTGVVFGYDSPAAAPKPTKTAHSPSPAHSPAVSPPSHSASPSKSPTVSPPVTTPASSPALATPPSVAPPKAPASAPVSSPAASPVGSENSPISSP
PSPPSFDASPVATPVGAPVEPEIPANPISGGSPVGTPSIFPSSSSPPMSTPASLAPETAERPGNHASALGKYNIGVEVILSGLSIWAAWAF