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Clc10G04490 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc10G04490
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrotransposon protein
Genome locationClcChr10:4986144..4986659
RNA-Seq ExpressionClc10G04490
SyntenyClc10G04490
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_038875070.1 uncharacterized protein LOC120067596 [Benincasa hispida]1.6e-4177.06Show/hide
Query:  MLGQLGFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQSSEDPHVMASNAFKEFEDEIRLGTQDCQTPEVRQTDSPLNP
        ML Q  F WNEEFKCVQV+REIF+LWV+SH + K MWNKSF HYDDLSTVF KDR VGQSSEDP+VMA+NAF+EFEDEIRLG+QDC TPEVRQT+SPLN 
Subjt:  MLGQLGFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQSSEDPHVMASNAFKEFEDEIRLGTQDCQTPEVRQTDSPLNP

Query:  DGMDEETVE
        D +DEE  E
Subjt:  DGMDEETVE

XP_038892629.1 uncharacterized protein At2g29880-like [Benincasa hispida]2.2e-4368.06Show/hide
Query:  MLGQLGFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQSSEDPHVMASNAFKEFEDEIRLGTQDCQTPEVRQTDSPLNP
        ML Q G GWNEEFKCV V+REIFDLWV SH +AKRMWNK FPHYDDLST+F KDR VGQSSE+P+VM                 DC TPEVRQT+SPLN 
Subjt:  MLGQLGFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQSSEDPHVMASNAFKEFEDEIRLGTQDCQTPEVRQTDSPLNP

Query:  DGMDEETVEQSTSRAT-PAESSRGSKRKRPSFQPEMIDIMRSTV
        D +DEE  EQST RA+ PAESSR +KR R SFQ EMIDIMRSTV
Subjt:  DGMDEETVEQSTSRAT-PAESSRGSKRKRPSFQPEMIDIMRSTV

XP_038899910.1 uncharacterized protein LOC120087100 [Benincasa hispida]9.7e-5578.08Show/hide
Query:  MLGQLGFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQSSEDPHVMASNAFKEFEDEIRLGTQDCQTPEVRQTDSPLNP
        ML Q GFGWNEEFKCVQV++EIF+   RSH +AK MWNKSFPHYDDLSTVF KDR VGQSSEDP+VMA NAF+EFEDEIRLG+QDC+T EVRQT+SPLN 
Subjt:  MLGQLGFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQSSEDPHVMASNAFKEFEDEIRLGTQDCQTPEVRQTDSPLNP

Query:  DGMDEETVEQSTSRAT-PAESSRGSKRKRPSFQPEMIDIMRSTVEM
        D +DEE  EQST RA+ P E+S+GSKRKRPSFQ EMIDIMRSTVEM
Subjt:  DGMDEETVEQSTSRAT-PAESSRGSKRKRPSFQPEMIDIMRSTVEM

XP_038902479.1 uncharacterized protein At2g29880-like [Benincasa hispida]5.3e-5381.06Show/hide
Query:  MLGQLGFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQSSEDPHVMASNAFKEFEDEIRLGTQDCQTPEVRQTDSPLNP
        ML Q GF WNEEFKCVQV+REIFDLWV SH +AKRMWNK FPHYDD STVF KDRVVG+SSEDP+VMA+NAF+EFEDEIRLG+QDCQTPEVRQT+SPLN 
Subjt:  MLGQLGFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQSSEDPHVMASNAFKEFEDEIRLGTQDCQTPEVRQTDSPLNP

Query:  DGMDEETVEQSTSRAT-PAESSRGSKRKRPSF
        D +DEE  EQST RA+ PA+SSRGSKRKRPSF
Subjt:  DGMDEETVEQSTSRAT-PAESSRGSKRKRPSF

XP_038904322.1 uncharacterized protein LOC120090676 [Benincasa hispida]1.2e-4980Show/hide
Query:  MLGQLGFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQSSEDPHVMASNAFKEFEDEIRLGTQDCQTPEVRQTDSPLNP
        ML Q GFGWNEEFKCVQV+REIFDLWVRSH +AK MWNK F HYDDLSTVF KDR VGQSSEDP VMA+NAF EFEDEIRLG+QDC TPEVRQT+SPLN 
Subjt:  MLGQLGFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQSSEDPHVMASNAFKEFEDEIRLGTQDCQTPEVRQTDSPLNP

Query:  DGMDEETVEQSTSRAT-PAESSRGSKRKRP
        D +DE   EQS SRA+ PAESSRGSK+KRP
Subjt:  DGMDEETVEQSTSRAT-PAESSRGSKRKRP

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859532.1e-1842.14Show/hide
Query:  GFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQSSEDPHVMASNAFKEFEDEIRLG-TQDCQTPEVRQTDSPLNPDGMD
        GFGWNEEF+C+  +R++FD W++SH +AK + +KSFP+YDDLS VF KDR  G  SE    + SN    F D I LG + D   P +      ++PD M 
Subjt:  GFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQSSEDPHVMASNAFKEFEDEIRLG-TQDCQTPEVRQTDSPLNPDGMD

Query:  EETVEQSTSRATPAESSRGSKRKRPSFQPEMIDIMRSTVE
             Q++ R      S  SKRKR S + E ++++RS +E
Subjt:  EETVEQSTSRATPAESSRGSKRKRPSFQPEMIDIMRSTVE

A0A5A7U0H7 Retrotransposon protein2.1e-1842.14Show/hide
Query:  GFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQSSEDPHVMASNAFKEFEDEIRLG-TQDCQTPEVRQTDSPLNPDGMD
        GFGWNEEF+C+  +R++FD W++SH +AK + +KSFP+YDDLS VF KDR  G  SE    + SN    F D I LG + D   P +      ++PD M 
Subjt:  GFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQSSEDPHVMASNAFKEFEDEIRLG-TQDCQTPEVRQTDSPLNPDGMD

Query:  EETVEQSTSRATPAESSRGSKRKRPSFQPEMIDIMRSTVE
             Q++ R      S  SKRKR S + E ++++RS +E
Subjt:  EETVEQSTSRATPAESSRGSKRKRPSFQPEMIDIMRSTVE

A0A5D3C1M0 Retrotransposon protein4.3e-1639.29Show/hide
Query:  GFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQSSEDPHVMASNAFKEFEDEIRLGTQDCQTPEVRQTDSPLNPDGMDE
        GFGWN+E KC+ V++E+FD WV+SH +AK + NKSF HYD+LS VF KDR  G  +E    + SN    ++        D   P +      ++PD    
Subjt:  GFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQSSEDPHVMASNAFKEFEDEIRLGTQDCQTPEVRQTDSPLNPDGMDE

Query:  ETVEQSTSRATPAES-SRGSKRKRPSFQPEMIDIMRSTVE
        + +E  T+R +   + S GSKRKRP    +  DI+R+ +E
Subjt:  ETVEQSTSRATPAES-SRGSKRKRPSFQPEMIDIMRSTVE

A0A5D3DG22 Retrotransposon protein4.7e-1546.46Show/hide
Query:  GFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQSSEDPHVMASNAFKEFEDEIRLG-TQDCQTPEVRQTDSPLNPDGM
        GFGWNEEF+C+  +R++FD WV+SH + K + +KSFP+YDDLS VF KDR  G  SE    + SN    F D I LG + D   P +      ++PD M
Subjt:  GFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQSSEDPHVMASNAFKEFEDEIRLG-TQDCQTPEVRQTDSPLNPDGM

A0A6J1DW73 uncharacterized protein LOC1110250181.1e-1939.29Show/hide
Query:  GFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQSSEDPHVMASNAFKEFEDEIRLGTQDCQTPEVRQTDSPLNPDGMDE
        GFGWN++ KC++ ++E+FD WV+SH +AK + NK  PHYDDL+  F KDR  G + + P  MAS+A     ++     QD   P+    ++    D ++E
Subjt:  GFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQSSEDPHVMASNAFKEFEDEIRLGTQDCQTPEVRQTDSPLNPDGMDE

Query:  ETVEQSTSRATPAESSRGSKRKRPSFQPEMIDIMRSTVEM
        +     TS+ T   SS GSKRKR  +  EM+D++R+ + M
Subjt:  ETVEQSTSRATPAESSRGSKRKRPSFQPEMIDIMRSTVEM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAGGCCAGTTGGGATTCGGCTGGAACGAAGAGTTTAAATGTGTCCAGGTCAAGAGGGAGATTTTCGATCTTTGGGTTCGAAGTCATCACAGTGCAAAGAGGATGTG
GAACAAGTCATTCCCCCATTACGATGACCTCTCCACCGTCTTTGAGAAAGATAGAGTTGTAGGACAATCAAGTGAGGACCCACACGTGATGGCGAGCAATGCATTTAAAG
AGTTTGAAGATGAGATTCGACTTGGAACACAGGACTGTCAGACACCTGAGGTTCGCCAAACAGATTCACCATTAAATCCGGATGGAATGGATGAAGAGACAGTGGAGCAA
TCTACAAGTAGAGCGACACCTGCCGAGTCATCTCGAGGAAGCAAGAGGAAGAGGCCATCATTCCAACCTGAAATGATCGATATCATGAGATCGACTGTTGAGATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTAGGCCAGTTGGGATTCGGCTGGAACGAAGAGTTTAAATGTGTCCAGGTCAAGAGGGAGATTTTCGATCTTTGGGTTCGAAGTCATCACAGTGCAAAGAGGATGTG
GAACAAGTCATTCCCCCATTACGATGACCTCTCCACCGTCTTTGAGAAAGATAGAGTTGTAGGACAATCAAGTGAGGACCCACACGTGATGGCGAGCAATGCATTTAAAG
AGTTTGAAGATGAGATTCGACTTGGAACACAGGACTGTCAGACACCTGAGGTTCGCCAAACAGATTCACCATTAAATCCGGATGGAATGGATGAAGAGACAGTGGAGCAA
TCTACAAGTAGAGCGACACCTGCCGAGTCATCTCGAGGAAGCAAGAGGAAGAGGCCATCATTCCAACCTGAAATGATCGATATCATGAGATCGACTGTTGAGATGTAG
Protein sequenceShow/hide protein sequence
MLGQLGFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQSSEDPHVMASNAFKEFEDEIRLGTQDCQTPEVRQTDSPLNPDGMDEETVEQ
STSRATPAESSRGSKRKRPSFQPEMIDIMRSTVEM