; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc10G04620 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc10G04620
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRNA polymerase II elongation factor
Genome locationClcChr10:5086474..5087856
RNA-Seq ExpressionClc10G04620
SyntenyClc10G04620
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7015562.1 hypothetical protein SDJN02_23198, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-10087.1Show/hide
Query:  ETKDSG--AHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSS
        ETKDSG  AH+VEIP E      NQN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGLRIGRRETK+ESLKQQIFQLCCYFFLFHALSLTLL+TSS
Subjt:  ETKDSG--AHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSS

Query:  DPNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISL
        DPNVC KWWV  VAMGATSGVFVI+VQLKLWLYWKAS QLQREKSENRALTRCVQELRMKGSCFNLSKEPQIG+RMKSSSVEIKWGPLTW SRNF+TI L
Subjt:  DPNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISL

Query:  FCFSAIVFAASKFILCG
         CFS IVF ASKFILCG
Subjt:  FCFSAIVFAASKFILCG

XP_004149573.1 uncharacterized protein LOC101219596 [Cucumis sativus]3.4e-10489.95Show/hide
Query:  MAETKDS-GAHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTS
        MAETKDS  AHIVEIPVEQEN T  QNLMISVIQ+HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCC+FFLFHALSLTLLYTS
Subjt:  MAETKDS-GAHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTS

Query:  SDPNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIS
        SDP VC+KWWV AV +GATSGVFVI+VQLKLW+YWKA GQLQ+EK+ENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIS
Subjt:  SDPNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIS

Query:  LFCFSAIVFAASKFILCGF
        L  FSAI+F  SKFILCGF
Subjt:  LFCFSAIVFAASKFILCGF

XP_008449068.1 PREDICTED: uncharacterized protein LOC103491049 [Cucumis melo]1.5e-10490.87Show/hide
Query:  MAETKDS-GAHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTS
        MA+TKDS  AHIVEIPVEQEN T  QNLMISVIQ+HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCC+FFLFHALSLTLLYTS
Subjt:  MAETKDS-GAHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTS

Query:  SDPNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIS
        SDP VC+KWWV AV +GATSGVFVI+VQLKLW+YWKA GQLQREKSENRALTRC QELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFI IS
Subjt:  SDPNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIS

Query:  LFCFSAIVFAASKFILCGF
        L  FSAIVFAASKFILCGF
Subjt:  LFCFSAIVFAASKFILCGF

XP_023553388.1 uncharacterized protein LOC111810817 [Cucurbita pepo subsp. pepo]1.8e-10087.04Show/hide
Query:  ETKDSG-AHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSSD
        ET+DSG AH+VEIP E      NQN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGLR+GRRETKMESLKQQIFQLCCYFFLFHALSLTLL+TSSD
Subjt:  ETKDSG-AHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSSD

Query:  PNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLF
        PNVC KWWV  VAMGATSGVFVI+VQLKLWLYWKAS QLQREKSENRALTRCVQELRMKGSCFNLSKEPQIG+RMKSSSVEIKWGPLTW SRNF+TI L 
Subjt:  PNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLF

Query:  CFSAIVFAASKFILCG
        CFS IVF ASKFILCG
Subjt:  CFSAIVFAASKFILCG

XP_038905570.1 uncharacterized protein LOC120091553 [Benincasa hispida]6.4e-11194.5Show/hide
Query:  MAETKDSGAHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSS
        MAETKDSGAHIVEIPVEQEN TQNQN MISVIQ+HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCC+FFLFHALSLTLLYTSS
Subjt:  MAETKDSGAHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSS

Query:  DPNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISL
        DPNVC+KWWV AVAMGATSGVFVI+VQLKLWLYWKASGQLQREK+ENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITI L
Subjt:  DPNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISL

Query:  FCFSAIVFAASKFILCGF
          FSAIVFAASKFILC F
Subjt:  FCFSAIVFAASKFILCGF

TrEMBL top hitse value%identityAlignment
A0A0A0L2U7 Uncharacterized protein1.7e-10489.95Show/hide
Query:  MAETKDS-GAHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTS
        MAETKDS  AHIVEIPVEQEN T  QNLMISVIQ+HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCC+FFLFHALSLTLLYTS
Subjt:  MAETKDS-GAHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTS

Query:  SDPNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIS
        SDP VC+KWWV AV +GATSGVFVI+VQLKLW+YWKA GQLQ+EK+ENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIS
Subjt:  SDPNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIS

Query:  LFCFSAIVFAASKFILCGF
        L  FSAI+F  SKFILCGF
Subjt:  LFCFSAIVFAASKFILCGF

A0A1S3BL81 uncharacterized protein LOC1034910497.4e-10590.87Show/hide
Query:  MAETKDS-GAHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTS
        MA+TKDS  AHIVEIPVEQEN T  QNLMISVIQ+HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCC+FFLFHALSLTLLYTS
Subjt:  MAETKDS-GAHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTS

Query:  SDPNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIS
        SDP VC+KWWV AV +GATSGVFVI+VQLKLW+YWKA GQLQREKSENRALTRC QELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFI IS
Subjt:  SDPNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIS

Query:  LFCFSAIVFAASKFILCGF
        L  FSAIVFAASKFILCGF
Subjt:  LFCFSAIVFAASKFILCGF

A0A5A7VJ68 Uncharacterized protein7.0e-7191.89Show/hide
Query:  MESLKQQIFQLCCYFFLFHALSLTLLYTSSDPNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEP
        MESLKQQIFQLCC+FFLFHALSLTLLYTSSDP VC+KWWV AV +GATSGVFVI+VQLKLW+YWKA GQLQREKSENRALTRCVQELRMKGSCFNLSKEP
Subjt:  MESLKQQIFQLCCYFFLFHALSLTLLYTSSDPNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEP

Query:  QIGNRMKSSSVEIKWGPLTWFSRNFITISLFCFSAIVFAASKFILCGF
        QIGNRMKSSSVEIKWGPLTWFSRNFI ISL  FSAIVFAASKFILCGF
Subjt:  QIGNRMKSSSVEIKWGPLTWFSRNFITISLFCFSAIVFAASKFILCGF

A0A6J1EWB5 uncharacterized protein LOC1114387092.7e-9986.64Show/hide
Query:  ETKDSG--AHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSS
        ETKDSG  AH+VEIP E      NQN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGLRIGRRETK+ESLKQQIFQLCCYFFLFHALSLTLL+TSS
Subjt:  ETKDSG--AHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSS

Query:  DPNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISL
        DPNVC KWWV  VAMGATSGVFVI+VQLKLWLYWKAS QLQREKSENRALTRCVQELRMKGSCFNLSKEPQIG+RMKSSSVEIKWGPLT  SRNF+TI L
Subjt:  DPNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISL

Query:  FCFSAIVFAASKFILCG
         CFS IVF ASKFILCG
Subjt:  FCFSAIVFAASKFILCG

A0A6J1HN07 uncharacterized protein LOC1114651147.2e-10087.1Show/hide
Query:  ETKDSGA--HIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSS
        ETKDSGA  HIVEIP E      NQN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGLRIGRRETK+ESLKQQIFQLCCYFFLFHALSLTLL+TSS
Subjt:  ETKDSGA--HIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSS

Query:  DPNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISL
        DPNVC KWWV  VAMGATSGVFVI+VQLKLWLYWKAS QLQREKSENRALTR VQELRMKGSCFNLSKEPQIG+RMKSSSVEIKWGPLTW SRNF+TI L
Subjt:  DPNVCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISL

Query:  FCFSAIVFAASKFILCG
         CFS IVF ASKFILCG
Subjt:  FCFSAIVFAASKFILCG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G12870.1 unknown protein7.5e-2535.26Show/hide
Query:  HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLY-------TSSDPNVCRKWWVAAVAMGATSGVFVIMVQ
        HPL QI+++  H LLLK W ++E L   R+  +E++++S++++I QL  +FFLFH++SL LL+       +S+  + C++ W+ ++    +S   +  V+
Subjt:  HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLY-------TSSDPNVCRKWWVAAVAMGATSGVFVIMVQ

Query:  LKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPL-TWFSRNFITISLFCFSAIVFAASKFILC
         K  +       L+REK + + L +CV+EL+ KG  F+L KE     R KS  VE K  P+  W +R+F+T+  F  S +V A  + ILC
Subjt:  LKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPL-TWFSRNFITISLFCFSAIVFAASKFILC

AT5G56120.1 unknown protein4.1e-6352.94Show/hide
Query:  MAETKDSGAHIVEIPVEQENQTQNQNL-----------MISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFH
        MA TKDS  H+VEIPV++E++ + Q             ++ VIQ HPL +ISES GHLLLLKLWQR+E LF  R+  +E+++ES+K++IFQLCC+F +FH
Subjt:  MAETKDSGAHIVEIPVEQENQTQNQNL-----------MISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFH

Query:  ALSLTLLYTSSDPN---------VCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSS
            TL+Y+SS  +         VC+KWW+ +    ATS V V +VQ KL+++WK    + RE+++NR LTRCV ELRMKGS F+LSKEP  G RMKSSS
Subjt:  ALSLTLLYTSSDPN---------VCRKWWVAAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSS

Query:  VEIKWGPLTWFSRNFITISLFCFSAIVFAASKFILCGF
        VEIKW P+TWFS+  ITI L C + + F  SKFILCGF
Subjt:  VEIKWGPLTWFSRNFITISLFCFSAIVFAASKFILCGF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAAACCAAAGATTCCGGTGCCCACATAGTTGAAATCCCAGTAGAACAGGAAAATCAAACTCAGAATCAAAACCTTATGATCTCTGTAATTCAAAACCACCCATT
GAGGCAAATTTCCGAAAGCTCTGGCCATTTATTACTCTTAAAGCTTTGGCAACGAGACGAGCATTTGTTCGGTCTCCGAATCGGCCGTCGAGAGACTAAAATGGAGTCTT
TAAAGCAACAGATCTTCCAACTCTGCTGCTACTTCTTCCTCTTCCATGCCCTCTCTCTCACTCTCTTGTACACTTCCTCTGATCCCAATGTGTGCAGAAAATGGTGGGTT
GCGGCGGTGGCGATGGGGGCGACGTCAGGGGTGTTCGTGATCATGGTGCAGCTGAAATTGTGGTTGTATTGGAAGGCATCAGGGCAGTTGCAGAGGGAGAAGAGTGAAAA
CAGAGCACTTACAAGATGTGTTCAAGAACTTAGAATGAAAGGGTCTTGTTTTAATTTGTCTAAAGAGCCTCAAATTGGGAATAGGATGAAGAGTTCAAGTGTGGAGATTA
AATGGGGGCCTCTCACTTGGTTTTCTAGGAATTTCATCACCATTTCTCTTTTTTGCTTTTCTGCCATTGTTTTTGCTGCTTCCAAGTTCATTCTTTGTGGCTTTTAA
mRNA sequenceShow/hide mRNA sequence
AAACAACCCTTTAAATATCTTCCAAAAGAAAACCCTTCTTTCAAAACCCAACAAAATCCCAATCCCAAACCCCATTTCTCCAATTTCAAACTCAACATTAACAAAATTTC
AAATCTCCGATGGCAGAAACCAAAGATTCCGGTGCCCACATAGTTGAAATCCCAGTAGAACAGGAAAATCAAACTCAGAATCAAAACCTTATGATCTCTGTAATTCAAAA
CCACCCATTGAGGCAAATTTCCGAAAGCTCTGGCCATTTATTACTCTTAAAGCTTTGGCAACGAGACGAGCATTTGTTCGGTCTCCGAATCGGCCGTCGAGAGACTAAAA
TGGAGTCTTTAAAGCAACAGATCTTCCAACTCTGCTGCTACTTCTTCCTCTTCCATGCCCTCTCTCTCACTCTCTTGTACACTTCCTCTGATCCCAATGTGTGCAGAAAA
TGGTGGGTTGCGGCGGTGGCGATGGGGGCGACGTCAGGGGTGTTCGTGATCATGGTGCAGCTGAAATTGTGGTTGTATTGGAAGGCATCAGGGCAGTTGCAGAGGGAGAA
GAGTGAAAACAGAGCACTTACAAGATGTGTTCAAGAACTTAGAATGAAAGGGTCTTGTTTTAATTTGTCTAAAGAGCCTCAAATTGGGAATAGGATGAAGAGTTCAAGTG
TGGAGATTAAATGGGGGCCTCTCACTTGGTTTTCTAGGAATTTCATCACCATTTCTCTTTTTTGCTTTTCTGCCATTGTTTTTGCTGCTTCCAAGTTCATTCTTTGTGGC
TTTTAAAGAGTCCAGGTAACATCCCATCTGCCAGGTGGTTGAAGAACTAAATATTGTGGGTGGTTTTAAAATATATTTTATTGGAGGATGAAGCAAGATGGGTCCGTCAT
AAAAACCAATATTTTAAGAAGAGATGTTGGAAGCAGTGGGAGGCTCAATCTTTACAAATTTATGATTCTGAAGAGAGAGACAATGAAGGAAGTTAGTACACACAACAAGA
TTAGTGTTGTTCTGAAGTGAACCAAAATCAGTGTTAATTAAGCAACACTGCTTGTGTGCACACTTTTGTTTTGTTTTCTAGGCATAATTAAGAACTTGCCAACGTTGGAA
TTGGCTATACGTAATTTTGTGGTTAATGTTTATTTATTTATAGATATACCCCATTCATTATTATTATATTTTACAAGCTCCCATTTATAAAGGCCTTCCTTTTAAAGTTG
CATCTTATACATCAAAAAATACTTGGATGC
Protein sequenceShow/hide protein sequence
MAETKDSGAHIVEIPVEQENQTQNQNLMISVIQNHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSSDPNVCRKWWV
AAVAMGATSGVFVIMVQLKLWLYWKASGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLFCFSAIVFAASKFILCGF