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Clc10G04760 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc10G04760
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionBnaUnng01810D protein
Genome locationClcChr10:5252148..5253303
RNA-Seq ExpressionClc10G04760
SyntenyClc10G04760
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN71466.1 hypothetical protein VITISV_038987 [Vitis vinifera]2.1e-0750.56Show/hide
Query:  RLNDNKISR--RSISKAGFRCERNSVRVQREGEREAKLSELSTGRSLHKPLALSFLRQLPFIRFVGAAQHIAGSQRAHTTCLTPRSKGP
        RL + K+ R  +S+ +     E   + + REG REAKLSEL              L +LPFIRF GAAQHIAGSQRA TTCLT RS+GP
Subjt:  RLNDNKISR--RSISKAGFRCERNSVRVQREGEREAKLSELSTGRSLHKPLALSFLRQLPFIRFVGAAQHIAGSQRAHTTCLTPRSKGP

CDY67014.1 BnaUnng01810D, partial [Brassica napus]3.6e-0778.95Show/hide
Query:  LRQLPFIRFVGAAQHIAGSQRAHTTCLTPRSKGPLIGK
        L +LPFIRF GAAQHIAGSQRAHTTCLT RS+GP++ K
Subjt:  LRQLPFIRFVGAAQHIAGSQRAHTTCLTPRSKGPLIGK

CDY67692.1 BnaUnng02390D [Brassica napus]2.4e-0685.29Show/hide
Query:  LRQLPFIRFVGAAQHIAGSQRAHTTCLTPRSKGP
        L +LPFIRF GAAQHIAGSQRAHTTCLT RS+GP
Subjt:  LRQLPFIRFVGAAQHIAGSQRAHTTCLTPRSKGP

KAF3949769.1 hypothetical protein CMV_024395 [Castanea mollissima]2.5e-1666.2Show/hide
Query:  LRQLPFIRFVGAAQHIAGSQRAHTTCLTPRSKGPLIGKRLLNHPIHPKE---KGPMYLHDPCRFDSIYTRS
        L +LPFIRF GAAQ IAGSQRAHTTCLTPR +GP + ++  + P HP +   KGPMYLHDPC F  IYTRS
Subjt:  LRQLPFIRFVGAAQHIAGSQRAHTTCLTPRSKGPLIGKRLLNHPIHPKE---KGPMYLHDPCRFDSIYTRS

QHN82804.1 uncharacterized protein DS421_20g699020 [Arachis hypogaea]8.1e-0758.18Show/hide
Query:  EAKLSELSTGRSLHKPLALSFLRQLPFIRFVGAAQHIAGSQRAHTTCLTPRSKGP
        E+K+  L+    + +  +   L +LPFIRF GAAQHIAG QRAHTTCLTPRS+GP
Subjt:  EAKLSELSTGRSLHKPLALSFLRQLPFIRFVGAAQHIAGSQRAHTTCLTPRSKGP

TrEMBL top hitse value%identityAlignment
A0A078JJS1 BnaUnng01810D protein (Fragment)1.8e-0778.95Show/hide
Query:  LRQLPFIRFVGAAQHIAGSQRAHTTCLTPRSKGPLIGK
        L +LPFIRF GAAQHIAGSQRAHTTCLT RS+GP++ K
Subjt:  LRQLPFIRFVGAAQHIAGSQRAHTTCLTPRSKGPLIGK

A0A078JQM0 BnaUnng02390D protein1.1e-0685.29Show/hide
Query:  LRQLPFIRFVGAAQHIAGSQRAHTTCLTPRSKGP
        L +LPFIRF GAAQHIAGSQRAHTTCLT RS+GP
Subjt:  LRQLPFIRFVGAAQHIAGSQRAHTTCLTPRSKGP

A0A0D2ZQF8 Uncharacterized protein1.0e-1072.55Show/hide
Query:  LRQLPFIRFVGAAQHIAGSQRAHTTCLTPRSKGPLIGKRLLNHPIHPKEKG
        L +LPFI F GAAQHIAGSQR HTTCLT RS+GP IGK    HPI+PK+KG
Subjt:  LRQLPFIRFVGAAQHIAGSQRAHTTCLTPRSKGPLIGKRLLNHPIHPKEKG

A0A3P6H9H9 Uncharacterized protein1.1e-0685.29Show/hide
Query:  LRQLPFIRFVGAAQHIAGSQRAHTTCLTPRSKGP
        L +LPFIRF GAAQHIAGSQRAHTTCLT RS+GP
Subjt:  LRQLPFIRFVGAAQHIAGSQRAHTTCLTPRSKGP

A5AMW1 Uncharacterized protein1.0e-0750.56Show/hide
Query:  RLNDNKISR--RSISKAGFRCERNSVRVQREGEREAKLSELSTGRSLHKPLALSFLRQLPFIRFVGAAQHIAGSQRAHTTCLTPRSKGP
        RL + K+ R  +S+ +     E   + + REG REAKLSEL              L +LPFIRF GAAQHIAGSQRA TTCLT RS+GP
Subjt:  RLNDNKISR--RSISKAGFRCERNSVRVQREGEREAKLSELSTGRSLHKPLALSFLRQLPFIRFVGAAQHIAGSQRAHTTCLTPRSKGP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCATTTGGATCGACGAGCTTTTTCAGCCCCAAAACTCAGAATCAATGGAATGAATCCGCATATCTGCTGCGCTCAATATGTGGGATTTCTGTTGGATCTAATCTT
TCGGGAAGCTTTTGGACCTAGCGAAAAGGACTTTCAGCCTTTGCGCAAGCAAGCAAAGTCGAAGCTTTGCCAGAAGCAAGACGAGGAAGCGGAGCTGTCGTATAAACGGG
GGTCGTTCAATCTAAGACAGCGTTGTCTTAGATTGAACGACAATAAGATAAGTCGACGTTCAATCTCTAAGGCGGGTTTCCGTTGCGAACGGAATAGTGTTCGTGTCCAA
AGGGAAGGGGAGAGGGAAGCGAAGCTTAGCGAGCTTTCCACCGGCCGATCACTACATAAGCCGCTGGCGTTGAGCTTTCTCCGCCAGCTTCCTTTCATTCGCTTCGTGGG
AGCCGCACAGCACATAGCTGGAAGTCAGAGGGCCCATACTACCTGTCTAACCCCTCGCTCCAAGGGACCGTTGATCGGAAAGCGCCTTCTTAATCACCCCATTCATCCAA
AAGAGAAGGGGCCTATGTATTTGCATGACCCCTGCAGATTTGACTCTATCTACACTCGGAGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTCATTTGGATCGACGAGCTTTTTCAGCCCCAAAACTCAGAATCAATGGAATGAATCCGCATATCTGCTGCGCTCAATATGTGGGATTTCTGTTGGATCTAATCTT
TCGGGAAGCTTTTGGACCTAGCGAAAAGGACTTTCAGCCTTTGCGCAAGCAAGCAAAGTCGAAGCTTTGCCAGAAGCAAGACGAGGAAGCGGAGCTGTCGTATAAACGGG
GGTCGTTCAATCTAAGACAGCGTTGTCTTAGATTGAACGACAATAAGATAAGTCGACGTTCAATCTCTAAGGCGGGTTTCCGTTGCGAACGGAATAGTGTTCGTGTCCAA
AGGGAAGGGGAGAGGGAAGCGAAGCTTAGCGAGCTTTCCACCGGCCGATCACTACATAAGCCGCTGGCGTTGAGCTTTCTCCGCCAGCTTCCTTTCATTCGCTTCGTGGG
AGCCGCACAGCACATAGCTGGAAGTCAGAGGGCCCATACTACCTGTCTAACCCCTCGCTCCAAGGGACCGTTGATCGGAAAGCGCCTTCTTAATCACCCCATTCATCCAA
AAGAGAAGGGGCCTATGTATTTGCATGACCCCTGCAGATTTGACTCTATCTACACTCGGAGCTAA
Protein sequenceShow/hide protein sequence
MIHLDRRAFSAPKLRINGMNPHICCAQYVGFLLDLIFREAFGPSEKDFQPLRKQAKSKLCQKQDEEAELSYKRGSFNLRQRCLRLNDNKISRRSISKAGFRCERNSVRVQ
REGEREAKLSELSTGRSLHKPLALSFLRQLPFIRFVGAAQHIAGSQRAHTTCLTPRSKGPLIGKRLLNHPIHPKEKGPMYLHDPCRFDSIYTRS