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Clc10G04775 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc10G04775
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionExopolygalacturonase-like
Genome locationClcChr10:5278626..5279471
RNA-Seq ExpressionClc10G04775
SyntenyClc10G04775
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065798.1 exopolygalacturonase-like [Cucumis melo var. makuwa]1.4e-0534.51Show/hide
Query:  AWSAICANNGGGVVLVLVMGI------------------------LPLFCFQNMVL------------QSTNTVRIKNMKFFHSKFFHISLNGCNDVVFD
        +++  CA+NGGGVVLV  MG                         L +F   N+ +            +S +   I+N+K F+SK +H  LNG N++VFD
Subjt:  AWSAICANNGGGVVLVLVMGI------------------------LPLFCFQNMVL------------QSTNTVRIKNMKFFHSKFFHISLNGCNDVVFD

Query:  NVTVITPPDNPTT
        +VTVI PP+NP T
Subjt:  NVTVITPPDNPTT

XP_038904214.1 exopolygalacturonase-like [Benincasa hispida]1.1e-0551.02Show/hide
Query:  NMVLQSTNTVRIKNMKFFHSKFFHISLNGCNDVVFDNVTVITPPDNPTT
        +M L + NT RI+N+K ++SK FH +++GC++V+FD+VTVI P D+P T
Subjt:  NMVLQSTNTVRIKNMKFFHSKFFHISLNGCNDVVFDNVTVITPPDNPTT

XP_038904215.1 exopolygalacturonase-like [Benincasa hispida]1.3e-0635.19Show/hide
Query:  KSFEYAWSAICANNGGGVVL----------VLVMGILPLFCFQ----------------NMVLQSTNTVRIKNMKFFHSKFFHISLNGCNDVVFDNVTVI
        K+   AWS  C N+GGGV            V  + I  L C                  +M L + NT+ IKN+  ++SK FH +++GC DV FD+VTV+
Subjt:  KSFEYAWSAICANNGGGVVL----------VLVMGILPLFCFQ----------------NMVLQSTNTVRIKNMKFFHSKFFHISLNGCNDVVFDNVTVI

Query:  TPPDNPTT
         P D+P T
Subjt:  TPPDNPTT

XP_038904217.1 exopolygalacturonase-like [Benincasa hispida]1.5e-1067.35Show/hide
Query:  NMVLQSTNTVRIKNMKFFHSKFFHISLNGCNDVVFDNVTVITPPDNPTT
        N++LQS N  RI+N+K FHSK FH +LNGCNDV+FDNVTVI P D+P T
Subjt:  NMVLQSTNTVRIKNMKFFHSKFFHISLNGCNDVVFDNVTVITPPDNPTT

XP_038904219.1 exopolygalacturonase-like [Benincasa hispida]4.3e-1065.31Show/hide
Query:  NMVLQSTNTVRIKNMKFFHSKFFHISLNGCNDVVFDNVTVITPPDNPTT
        N++ QS N  RI+N+K FHSK FH +LNGCNDV+FDNVTVI P D+P T
Subjt:  NMVLQSTNTVRIKNMKFFHSKFFHISLNGCNDVVFDNVTVITPPDNPTT

TrEMBL top hitse value%identityAlignment
A0A5D3BBN4 Exopolygalacturonase-like6.9e-0634.51Show/hide
Query:  AWSAICANNGGGVVLVLVMGI------------------------LPLFCFQNMVL------------QSTNTVRIKNMKFFHSKFFHISLNGCNDVVFD
        +++  CA+NGGGVVLV  MG                         L +F   N+ +            +S +   I+N+K F+SK +H  LNG N++VFD
Subjt:  AWSAICANNGGGVVLVLVMGI------------------------LPLFCFQNMVL------------QSTNTVRIKNMKFFHSKFFHISLNGCNDVVFD

Query:  NVTVITPPDNPTT
        +VTVI PP+NP T
Subjt:  NVTVITPPDNPTT

A0A6J1EVV0 exopolygalacturonase-like5.9e-0552.17Show/hide
Query:  LQSTNTVRIKNMKFFHSKFFHISLNGCNDVVFDNVTVITPPDNPTT
        LQS N +RI+++   +SK +H +++GCNDVVFDNV VI P ++P T
Subjt:  LQSTNTVRIKNMKFFHSKFFHISLNGCNDVVFDNVTVITPPDNPTT

A0A6J1EWH6 exopolygalacturonase-like5.0e-0442.86Show/hide
Query:  NNGGGVVLVLVMGILPLFCFQNMVLQSTNTVRIKNMKFFHSKFFHISLNGCNDVVFDNVTVITPPDNPTT
        +NG G VLV    +  ++  +   L + NT RI  +   +SKFFH +++GC DV FD+VTVI P D+P T
Subjt:  NNGGGVVLVLVMGILPLFCFQNMVLQSTNTVRIKNMKFFHSKFFHISLNGCNDVVFDNVTVITPPDNPTT

A0A6J1F153 exopolygalacturonase-like2.6e-0553.06Show/hide
Query:  NMVLQSTNTVRIKNMKFFHSKFFHISLNGCNDVVFDNVTVITPPDNPTT
        +M L S NT RI  +   +SKFFH  ++GC DV FD+VTVI P D+P T
Subjt:  NMVLQSTNTVRIKNMKFFHSKFFHISLNGCNDVVFDNVTVITPPDNPTT

A0A6J1L3F3 exopolygalacturonase-like2.0e-0558.7Show/hide
Query:  LQSTNTVRIKNMKFFHSKFFHISLNGCNDVVFDNVTVITPPDNPTT
        LQS + VRI N+   +SK  H  ++GCNDVVFDNVTVI P D+P T
Subjt:  LQSTNTVRIKNMKFFHSKFFHISLNGCNDVVFDNVTVITPPDNPTT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G65570.1 Pectin lyase-like superfamily protein6.4e-0434.88Show/hide
Query:  TNTVRIKNMKFFHSKFFHISLNGCNDVVFDNVTVITPPDNPTT
        +N V+IK +   +S+ FHI++N C ++  ++V +I P ++P T
Subjt:  TNTVRIKNMKFFHSKFFHISLNGCNDVVFDNVTVITPPDNPTT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAAATCTCCCCTAAAAGCTTTGAGTATGCATGGAGTGCAATATGTGCAAACAATGGAGGTGGTGTGGTTTTAGTATTGGTAATGGGGATTTTGCCACTGTTTTG
CTTCCAGAATATGGTACTCCAATCAACCAACACTGTAAGGATCAAGAACATGAAATTCTTTCATAGCAAATTCTTCCATATCTCATTGAATGGATGCAATGATGTTGTGT
TCGATAACGTTACAGTGATTACACCACCAGATAATCCCACCACACGGATGAAATTCACATTTCCATATTTACAGTTTTGGGATTGTGGCTATCTCATAATATCATTGGAT
TGCATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTGAAATCTCCCCTAAAAGCTTTGAGTATGCATGGAGTGCAATATGTGCAAACAATGGAGGTGGTGTGGTTTTAGTATTGGTAATGGGGATTTTGCCACTGTTTTG
CTTCCAGAATATGGTACTCCAATCAACCAACACTGTAAGGATCAAGAACATGAAATTCTTTCATAGCAAATTCTTCCATATCTCATTGAATGGATGCAATGATGTTGTGT
TCGATAACGTTACAGTGATTACACCACCAGATAATCCCACCACACGGATGAAATTCACATTTCCATATTTACAGTTTTGGGATTGTGGCTATCTCATAATATCATTGGAT
TGCATGTAG
Protein sequenceShow/hide protein sequence
MGEISPKSFEYAWSAICANNGGGVVLVLVMGILPLFCFQNMVLQSTNTVRIKNMKFFHSKFFHISLNGCNDVVFDNVTVITPPDNPTTRMKFTFPYLQFWDCGYLIISLD
CM