; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc10G04810 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc10G04810
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionexopolygalacturonase-like
Genome locationClcChr10:5310119..5312819
RNA-Seq ExpressionClc10G04810
SyntenyClc10G04810
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065793.1 exopolygalacturonase-like [Cucumis melo var. makuwa]6.4e-0471.43Show/hide
Query:  MSIDINIMNSVINTGDDCISLGPRSKAVNITNIQC
        +S  INIM+S I TGDDCISLGP SK +NITN+QC
Subjt:  MSIDINIMNSVINTGDDCISLGPRSKAVNITNIQC
XP_022932248.1 exopolygalacturonase-like [Cucurbita moschata]3.7e-0440.54Show/hide
Query:  SIDINIMNSVINTGDDCISLGPRSKAVNITNIQCDQHQEWCQNQIMVDSIFKYGTKTRATLNAFYESLSIGVPFLYPGVTHLYLSKNTSSSFPLFPLPEL
        S  INIM+SVI TGDDCISLGP SK +NIT+IQC        + I + S+ KY  +   +     +S  +G      GV      K  SSSF  F    +
Subjt:  SIDINIMNSVINTGDDCISLGPRSKAVNITNIQCDQHQEWCQNQIMVDSIFKYGTKTRATLNAFYESLSIGVPFLYPGVTHLYLSKNTSSSFPLFPLPEL

Query:  SGHSVLTLERK
        S  + L LE K
Subjt:  SGHSVLTLERK
XP_031738767.1 exopolygalacturonase [Cucumis sativus]6.4e-0476.47Show/hide
Query:  SIDINIMNSVINTGDDCISLGPRSKAVNITNIQC
        S  INIM+S I TGDDCISLGP SK +NITNIQC
Subjt:  SIDINIMNSVINTGDDCISLGPRSKAVNITNIQC
XP_038904214.1 exopolygalacturonase-like [Benincasa hispida]9.8e-0547.89Show/hide
Query:  SIDINIMNSVINTGDDCISLGPRSKAVNITNIQCDQHQEWCQNQIMVDSIFKYGTKTRATLNAFYESLSIG
        S  INIM+SVI+TGDDCISLGP SK +NITNIQC        + I + S+ KY  +         +S+ IG
Subjt:  SIDINIMNSVINTGDDCISLGPRSKAVNITNIQCDQHQEWCQNQIMVDSIFKYGTKTRATLNAFYESLSIG
XP_038904215.1 exopolygalacturonase-like [Benincasa hispida]2.9e-0476.47Show/hide
Query:  SIDINIMNSVINTGDDCISLGPRSKAVNITNIQC
        S  INIM+SVI TGDDCISLGP SK +NITN+QC
Subjt:  SIDINIMNSVINTGDDCISLGPRSKAVNITNIQC
TrEMBL top hitse value%identityAlignment
A0A0A0L7H9 Uncharacterized protein3.1e-0476.47Show/hide
Query:  SIDINIMNSVINTGDDCISLGPRSKAVNITNIQC
        S  INIM+S I TGDDCISLGP SK +NITNIQC
Subjt:  SIDINIMNSVINTGDDCISLGPRSKAVNITNIQC
A0A1S4DX91 exopolygalacturonase-like3.1e-0471.43Show/hide
Query:  MSIDINIMNSVINTGDDCISLGPRSKAVNITNIQC
        +S  INIM+S I TGDDCISLGP SK +NITN+QC
Subjt:  MSIDINIMNSVINTGDDCISLGPRSKAVNITNIQC
A0A5C7IE72 Glycerophosphodiester phosphodiesterase5.3e-0465.71Show/hide
Query:  MSIDINIMNSVINTGDDCISLGPRSKAVNITNIQC
        MS +I I+NSVI TGDDC+S+GP SK +NI+N+QC
Subjt:  MSIDINIMNSVINTGDDCISLGPRSKAVNITNIQC
A0A5D3B9J1 Exopolygalacturonase-like3.1e-0471.43Show/hide
Query:  MSIDINIMNSVINTGDDCISLGPRSKAVNITNIQC
        +S  INIM+S I TGDDCISLGP SK +NITN+QC
Subjt:  MSIDINIMNSVINTGDDCISLGPRSKAVNITNIQC
A0A6J1F153 exopolygalacturonase-like1.8e-0440.54Show/hide
Query:  SIDINIMNSVINTGDDCISLGPRSKAVNITNIQCDQHQEWCQNQIMVDSIFKYGTKTRATLNAFYESLSIGVPFLYPGVTHLYLSKNTSSSFPLFPLPEL
        S  INIM+SVI TGDDCISLGP SK +NIT+IQC        + I + S+ KY  +   +     +S  +G      GV      K  SSSF  F    +
Subjt:  SIDINIMNSVINTGDDCISLGPRSKAVNITNIQCDQHQEWCQNQIMVDSIFKYGTKTRATLNAFYESLSIGVPFLYPGVTHLYLSKNTSSSFPLFPLPEL

Query:  SGHSVLTLERK
        S  + L LE K
Subjt:  SGHSVLTLERK
SwissProt top hitse value%identityAlignment
P24548 Exopolygalacturonase (Fragment)1.7e-0467.74Show/hide
Query:  INIMNSVINTGDDCISLGPRSKAVNITNIQC
        +NI+N+ I TGDDCISLG  SK +NITNI C
Subjt:  INIMNSVINTGDDCISLGPRSKAVNITNIQC
Arabidopsis top hitse value%identityAlignment
AT5G27530.1 Pectin lyase-like superfamily protein8.9e-0447.06Show/hide
Query:  SIDINIMNSVINTGDDCISLGPRSKAVNITNIQC
        S ++NI +S I TGDDCI++   S ++NIT + C
Subjt:  SIDINIMNSVINTGDDCISLGPRSKAVNITNIQC
AT5G39910.1 Pectin lyase-like superfamily protein3.0e-0441.07Show/hide
Query:  SIDINIMNSVINTGDDCISLGPRSKAVNITNIQCDQHQEWCQNQIMVDSIFKYGTK
        S ++ + +S I TGDDCIS+G  SK +NI+ I C        + I + S+ +YGTK
Subjt:  SIDINIMNSVINTGDDCISLGPRSKAVNITNIQCDQHQEWCQNQIMVDSIFKYGTK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATTGACATCAACATTATGAATTCAGTGATAAACACTGGAGATGATTGCATTTCCTTGGGCCCTAGAAGTAAAGCCGTCAACATAACCAATATTCAATGTGATCA
ACACCAAGAATGGTGTCAGAATCAAATCATGGTCGACTCCATTTTCAAGTATGGTACCAAAACCCGGGCCACCCTCAATGCCTTCTACGAATCCCTAAGCATTGGGGTCC
CATTTCTATATCCAGGTGTTACTCACCTATACTTGTCAAAGAATACTTCTTCTTCCTTTCCTCTATTTCCTCTTCCCGAGCTTTCTGGACACAGCGTTCTAACTCTGGAA
CGCAAGGCTCCATTTCCCTCTGTCAGCCCGGTTGAACGCAACCCTGCCTTTCAACGCAAGGTTGGTAACGCAAGGCTGGTTATTTCCGCAAAGTGCATTCCGACTCTTCT
TACTTCCCTTCCGGATGCGTCGTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGATTGACATCAACATTATGAATTCAGTGATAAACACTGGAGATGATTGCATTTCCTTGGGCCCTAGAAGTAAAGCCGTCAACATAACCAATATTCAATGTGATCA
ACACCAAGAATGGTGTCAGAATCAAATCATGGTCGACTCCATTTTCAAGTATGGTACCAAAACCCGGGCCACCCTCAATGCCTTCTACGAATCCCTAAGCATTGGGGTCC
CATTTCTATATCCAGGTGTTACTCACCTATACTTGTCAAAGAATACTTCTTCTTCCTTTCCTCTATTTCCTCTTCCCGAGCTTTCTGGACACAGCGTTCTAACTCTGGAA
CGCAAGGCTCCATTTCCCTCTGTCAGCCCGGTTGAACGCAACCCTGCCTTTCAACGCAAGGTTGGTAACGCAAGGCTGGTTATTTCCGCAAAGTGCATTCCGACTCTTCT
TACTTCCCTTCCGGATGCGTCGTCTTAG
Protein sequenceShow/hide protein sequence
MSIDINIMNSVINTGDDCISLGPRSKAVNITNIQCDQHQEWCQNQIMVDSIFKYGTKTRATLNAFYESLSIGVPFLYPGVTHLYLSKNTSSSFPLFPLPELSGHSVLTLE
RKAPFPSVSPVERNPAFQRKVGNARLVISAKCIPTLLTSLPDASS