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Clc10G05170 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc10G05170
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
Genome locationClcChr10:5706681..5707422
RNA-Seq ExpressionClc10G05170
SyntenyClc10G05170
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055854.1 uncharacterized protein E6C27_scaffold104G00300 [Cucumis melo var. makuwa]1.8e-1253.15Show/hide
Query:  NPLLQVIACSFVADDC-----ASIFARR--YDGKASKEKGDEDSGGERCKGDRAPSTAEEFNRVAAEKQGK---EVVHDDDKGVAKESEAMEKSGVNDDD
        NPL QV+  S+ +        AS+F RR  Y    SK++  E SGGER K +RAPSTAEEFNR+A EK+ K   E V + DK V KES  MEKS   ++ 
Subjt:  NPLLQVIACSFVADDC-----ASIFARR--YDGKASKEKGDEDSGGERCKGDRAPSTAEEFNRVAAEKQGK---EVVHDDDKGVAKESEAMEKSGVNDDD

Query:  INKGPNYRPCS
        INKGPNYRPCS
Subjt:  INKGPNYRPCS

KAG6596946.1 hypothetical protein SDJN03_10126, partial [Cucurbita argyrosperma subsp. sororia]1.8e-0742.73Show/hide
Query:  IISRPNPLLQVIACSFVADDCASIFARRYDGKASKEK----GDEDSGGERCKGDRAPSTAEEFNRVAAEKQGKEVVHDDDKGVAKESEAMEKSGVNDDDI
        II   NP+  ++ACS V     S+ ARRYD   + EK      E     R   DRAPS AEEFNR+A EK  KE      +   K+SE  +K+  +D ++
Subjt:  IISRPNPLLQVIACSFVADDCASIFARRYDGKASKEK----GDEDSGGERCKGDRAPSTAEEFNRVAAEKQGKEVVHDDDKGVAKESEAMEKSGVNDDDI

Query:  NKGPNYRPCS
        + GPNYRPCS
Subjt:  NKGPNYRPCS

KGN56105.1 hypothetical protein Csa_009481 [Cucumis sativus]3.9e-1544.2Show/hide
Query:  MANIESS----TRQPKRMPYRYPLPYLSPSILQHSLNSSQTTHWKMKIKIMFGIP-----SNIISRPNPLLQVIACSFVADDCA-----SIFARRYDGKA
        MAN E+S     R+P+R+P   P  + S S L        T + KMK   +F        +  +   NP   V + S+ +   A     S+F RRY GK 
Subjt:  MANIESS----TRQPKRMPYRYPLPYLSPSILQHSLNSSQTTHWKMKIKIMFGIP-----SNIISRPNPLLQVIACSFVADDCA-----SIFARRYDGKA

Query:  SKEKGDEDSGGERCKGDRAPSTAEEFNRVAAEKQGK-------EVVHDDDKGVAKESE-AMEKSGVNDDDINKGPNYRPCS
        SK++  E SGGER K +RAPSTAEEFNR+A EKQ K       + VH  DK  AKESE AMEKS   ++ INKGPNYRPCS
Subjt:  SKEKGDEDSGGERCKGDRAPSTAEEFNRVAAEKQGK-------EVVHDDDKGVAKESE-AMEKSGVNDDDINKGPNYRPCS

XP_016900655.1 PREDICTED: uncharacterized protein LOC107990980 isoform X1 [Cucumis melo]7.4e-1445.45Show/hide
Query:  LNSSQTTHWKMKIKI-MFGIP------SNIISRPNPLLQVIACSFVADDC-----ASIFARRYDGKASKEKGDEDSGGERCKGDRAPSTAEEFNRVAAEK
        L  S T + + K+K+   GIP      +  ++  NPL QV+  S+ +        AS+F RR  GK   +   E SGGER K +RAPSTAEEFNR+A EK
Subjt:  LNSSQTTHWKMKIKI-MFGIP------SNIISRPNPLLQVIACSFVADDC-----ASIFARRYDGKASKEKGDEDSGGERCKGDRAPSTAEEFNRVAAEK

Query:  QGK---EVVHDDDKGVAKESEAMEKSGVNDDDINKGPNYRPCS
        + K   E V + DK V KES  M KS   ++ INKGPNYRPCS
Subjt:  QGK---EVVHDDDKGVAKESEAMEKSGVNDDDINKGPNYRPCS

XP_016900656.1 PREDICTED: uncharacterized protein LOC107990980 isoform X2 [Cucumis melo]1.3e-1057.47Show/hide
Query:  SIFARRYDGKASKEKGDEDSGGERCKGDRAPSTAEEFNRVAAEKQGK---EVVHDDDKGVAKESEAMEKSGVNDDDINKGPNYRPCS
        S+F RR  GK   +   E SGGER K +RAPSTAEEFNR+A EK+ K   E V + DK V KES  M KS   ++ INKGPNYRPCS
Subjt:  SIFARRYDGKASKEKGDEDSGGERCKGDRAPSTAEEFNRVAAEKQGK---EVVHDDDKGVAKESEAMEKSGVNDDDINKGPNYRPCS

TrEMBL top hitse value%identityAlignment
A0A0A0L2C8 Uncharacterized protein1.9e-1544.2Show/hide
Query:  MANIESS----TRQPKRMPYRYPLPYLSPSILQHSLNSSQTTHWKMKIKIMFGIP-----SNIISRPNPLLQVIACSFVADDCA-----SIFARRYDGKA
        MAN E+S     R+P+R+P   P  + S S L        T + KMK   +F        +  +   NP   V + S+ +   A     S+F RRY GK 
Subjt:  MANIESS----TRQPKRMPYRYPLPYLSPSILQHSLNSSQTTHWKMKIKIMFGIP-----SNIISRPNPLLQVIACSFVADDCA-----SIFARRYDGKA

Query:  SKEKGDEDSGGERCKGDRAPSTAEEFNRVAAEKQGK-------EVVHDDDKGVAKESE-AMEKSGVNDDDINKGPNYRPCS
        SK++  E SGGER K +RAPSTAEEFNR+A EKQ K       + VH  DK  AKESE AMEKS   ++ INKGPNYRPCS
Subjt:  SKEKGDEDSGGERCKGDRAPSTAEEFNRVAAEKQGK-------EVVHDDDKGVAKESE-AMEKSGVNDDDINKGPNYRPCS

A0A1S4DXE7 uncharacterized protein LOC107990980 isoform X26.3e-1157.47Show/hide
Query:  SIFARRYDGKASKEKGDEDSGGERCKGDRAPSTAEEFNRVAAEKQGK---EVVHDDDKGVAKESEAMEKSGVNDDDINKGPNYRPCS
        S+F RR  GK   +   E SGGER K +RAPSTAEEFNR+A EK+ K   E V + DK V KES  M KS   ++ INKGPNYRPCS
Subjt:  SIFARRYDGKASKEKGDEDSGGERCKGDRAPSTAEEFNRVAAEKQGK---EVVHDDDKGVAKESEAMEKSGVNDDDINKGPNYRPCS

A0A1S4DY64 uncharacterized protein LOC107990980 isoform X13.6e-1445.45Show/hide
Query:  LNSSQTTHWKMKIKI-MFGIP------SNIISRPNPLLQVIACSFVADDC-----ASIFARRYDGKASKEKGDEDSGGERCKGDRAPSTAEEFNRVAAEK
        L  S T + + K+K+   GIP      +  ++  NPL QV+  S+ +        AS+F RR  GK   +   E SGGER K +RAPSTAEEFNR+A EK
Subjt:  LNSSQTTHWKMKIKI-MFGIP------SNIISRPNPLLQVIACSFVADDC-----ASIFARRYDGKASKEKGDEDSGGERCKGDRAPSTAEEFNRVAAEK

Query:  QGK---EVVHDDDKGVAKESEAMEKSGVNDDDINKGPNYRPCS
        + K   E V + DK V KES  M KS   ++ INKGPNYRPCS
Subjt:  QGK---EVVHDDDKGVAKESEAMEKSGVNDDDINKGPNYRPCS

A0A5A7UKZ4 Uncharacterized protein8.8e-1353.15Show/hide
Query:  NPLLQVIACSFVADDC-----ASIFARR--YDGKASKEKGDEDSGGERCKGDRAPSTAEEFNRVAAEKQGK---EVVHDDDKGVAKESEAMEKSGVNDDD
        NPL QV+  S+ +        AS+F RR  Y    SK++  E SGGER K +RAPSTAEEFNR+A EK+ K   E V + DK V KES  MEKS   ++ 
Subjt:  NPLLQVIACSFVADDC-----ASIFARR--YDGKASKEKGDEDSGGERCKGDRAPSTAEEFNRVAAEKQGK---EVVHDDDKGVAKESEAMEKSGVNDDD

Query:  INKGPNYRPCS
        INKGPNYRPCS
Subjt:  INKGPNYRPCS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGAGATCATAGGTAGGGTTGATGAAATGGCAAATATAGAAAGCTCCACGAGGCAGCCTAAGAGAATGCCATATAGATATCCTCTTCCATATTTATCACCCTCCAT
TCTCCAACATTCACTCAATTCATCTCAAACTACCCACTGGAAAATGAAGATAAAGATTATGTTTGGTATCCCAAGCAACATTATCTCCAGGCCAAATCCATTGCTCCAAG
TCATTGCTTGTAGCTTTGTGGCTGATGACTGCGCATCCATTTTTGCTCGGCGCTATGATGGCAAAGCAAGTAAAGAGAAGGGCGACGAGGACAGCGGCGGTGAGAGATGT
AAGGGGGACCGGGCTCCCTCGACGGCGGAGGAGTTCAATAGAGTGGCGGCTGAAAAGCAGGGGAAGGAGGTGGTGCATGATGATGATAAGGGGGTGGCCAAAGAATCTGA
AGCCATGGAGAAAAGTGGCGTGAATGACGACGACATAAACAAAGGGCCTAATTACCGGCCCTGTAGCTGA
mRNA sequenceShow/hide mRNA sequence
CCTTATTTGAGAGTAAGAATAGTAAGAGCTGAATATGATTGAGATCATAGGTAGGGTTGATGAAATGGCAAATATAGAAAGCTCCACGAGGCAGCCTAAGAGAATGCCAT
ATAGATATCCTCTTCCATATTTATCACCCTCCATTCTCCAACATTCACTCAATTCATCTCAAACTACCCACTGGAAAATGAAGATAAAGATTATGTTTGGTATCCCAAGC
AACATTATCTCCAGGCCAAATCCATTGCTCCAAGTCATTGCTTGTAGCTTTGTGGCTGATGACTGCGCATCCATTTTTGCTCGGCGCTATGATGGCAAAGCAAGTAAAGA
GAAGGGCGACGAGGACAGCGGCGGTGAGAGATGTAAGGGGGACCGGGCTCCCTCGACGGCGGAGGAGTTCAATAGAGTGGCGGCTGAAAAGCAGGGGAAGGAGGTGGTGC
ATGATGATGATAAGGGGGTGGCCAAAGAATCTGAAGCCATGGAGAAAAGTGGCGTGAATGACGACGACATAAACAAAGGGCCTAATTACCGGCCCTGTAGCTGATGGATC
CCACTCTCAAATATGAATCCCCAACGGATTTTGCCAAAACTACTCTATATAACTTTCGTTTTCCCTTTTTATGTTGACTTTGGCATGTATAGTAATTACAAGTTTTTTGT
TGGAGTGTGTAAAAAGCGTATAATTTGAGTGTAATTTTGATTTGTTTAAAAATATTCATGTACAAAACCCAACACATTCTTC
Protein sequenceShow/hide protein sequence
MIEIIGRVDEMANIESSTRQPKRMPYRYPLPYLSPSILQHSLNSSQTTHWKMKIKIMFGIPSNIISRPNPLLQVIACSFVADDCASIFARRYDGKASKEKGDEDSGGERC
KGDRAPSTAEEFNRVAAEKQGKEVVHDDDKGVAKESEAMEKSGVNDDDINKGPNYRPCS