CuGenDBv2

Gene ID	Clc10G06050
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic
Genome location	ClcChr10:7973595..7974733
RNA-Seq Expression	Clc10G06050
Synteny	Clc10G06050
Gene Ontology terms	GO:0019684 - photosynthesis, light reaction (biological process) GO:0022900 - electron transport chain (biological process) GO:0005886 - plasma membrane (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0005506 - iron ion binding (molecular function) GO:0008137 - NADH dehydrogenase (ubiquinone) activity (molecular function) GO:0048038 - quinone binding (molecular function) GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domains	IPR001694 - NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H IPR006137 - NADH:ubiquinone oxidoreductase-like, 20kDa subunit

Homology

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GenBank top hits

e value

%identity

Alignment

AAY58001.1 NdhK [Falkia repens]

2.9e-20

94.64

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Query:  MLSTDSYSTVRGVDKLIPVDVYLPGCSPKPEAIIDAITKLRKKISREIYEDRIKSP
        M STDSYSTVRGVDKLIPVDVYLPGC PKPEA+IDAITKLRKKISREIYEDRIKSP
Subjt:  MLSTDSYSTVRGVDKLIPVDVYLPGCSPKPEAIIDAITKLRKKISREIYEDRIKSP

QTJ25436.1 NdhK [Impatiens balsamina]

1.4e-19

96.36

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Query:  MLSTDSYSTVRGVDKLIPVDVYLPGCSPKPEAIIDAITKLRKKISREIYEDRIKS
        M STDSYSTVRGVDKLIPVDVYLPGC PKPEAIIDAITKLRKKISREIYEDRIKS
Subjt:  MLSTDSYSTVRGVDKLIPVDVYLPGCSPKPEAIIDAITKLRKKISREIYEDRIKS

QTJ25525.1 NdhK [Impatiens chlorosepala]

1.4e-19

96.36

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Query:  MLSTDSYSTVRGVDKLIPVDVYLPGCSPKPEAIIDAITKLRKKISREIYEDRIKS
        M STDSYSTVRGVDKLIPVDVYLPGC PKPEAIIDAITKLRKKISREIYEDRIKS
Subjt:  MLSTDSYSTVRGVDKLIPVDVYLPGCSPKPEAIIDAITKLRKKISREIYEDRIKS

QUV75251.1 NADH dehydrogenase subunit K [Impatiens mengtszeana]

1.4e-19

96.36

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Query:  MLSTDSYSTVRGVDKLIPVDVYLPGCSPKPEAIIDAITKLRKKISREIYEDRIKS
        M STDSYSTVRGVDKLIPVDVYLPGC PKPEAIIDAITKLRKKISREIYEDRIKS
Subjt:  MLSTDSYSTVRGVDKLIPVDVYLPGCSPKPEAIIDAITKLRKKISREIYEDRIKS

YP_009828934.1 NdhK [Impatiens hawkeri]

1.4e-19

96.36

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Query:  MLSTDSYSTVRGVDKLIPVDVYLPGCSPKPEAIIDAITKLRKKISREIYEDRIKS
        M STDSYSTVRGVDKLIPVDVYLPGC PKPEAIIDAITKLRKKISREIYEDRIKS
Subjt:  MLSTDSYSTVRGVDKLIPVDVYLPGCSPKPEAIIDAITKLRKKISREIYEDRIKS

TrEMBL top hits

e value

%identity

Alignment

A0A0K1Z8P3 NADH-quinone oxidoreductase subunit B

6.9e-20

96.36

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Query:  MLSTDSYSTVRGVDKLIPVDVYLPGCSPKPEAIIDAITKLRKKISREIYEDRIKS
        M STDSYSTVRGVDKLIPVDVYLPGC PKPEAIIDAITKLRKKISREIYEDRIKS
Subjt:  MLSTDSYSTVRGVDKLIPVDVYLPGCSPKPEAIIDAITKLRKKISREIYEDRIKS

A0A2P1BY09 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic

6.9e-20

96.36

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Query:  MLSTDSYSTVRGVDKLIPVDVYLPGCSPKPEAIIDAITKLRKKISREIYEDRIKS
        M STDSYSTVRGVDKLIPVDVYLPGC PKPEAIIDAITKLRKKISREIYEDRIKS
Subjt:  MLSTDSYSTVRGVDKLIPVDVYLPGCSPKPEAIIDAITKLRKKISREIYEDRIKS

A0A6G8FF84 NADH-quinone oxidoreductase subunit B

6.9e-20

96.36

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Query:  MLSTDSYSTVRGVDKLIPVDVYLPGCSPKPEAIIDAITKLRKKISREIYEDRIKS
        M STDSYSTVRGVDKLIPVDVYLPGC PKPEAIIDAITKLRKKISREIYEDRIKS
Subjt:  MLSTDSYSTVRGVDKLIPVDVYLPGCSPKPEAIIDAITKLRKKISREIYEDRIKS

A0A6M3QGV1 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic

6.9e-20

96.36

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Query:  MLSTDSYSTVRGVDKLIPVDVYLPGCSPKPEAIIDAITKLRKKISREIYEDRIKS
        M STDSYSTVRGVDKLIPVDVYLPGC PKPEAIIDAITKLRKKISREIYEDRIKS
Subjt:  MLSTDSYSTVRGVDKLIPVDVYLPGCSPKPEAIIDAITKLRKKISREIYEDRIKS

Q49CD2 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic

1.4e-20

94.64

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Query:  MLSTDSYSTVRGVDKLIPVDVYLPGCSPKPEAIIDAITKLRKKISREIYEDRIKSP
        M STDSYSTVRGVDKLIPVDVYLPGC PKPEA+IDAITKLRKKISREIYEDRIKSP
Subjt:  MLSTDSYSTVRGVDKLIPVDVYLPGCSPKPEAIIDAITKLRKKISREIYEDRIKSP

SwissProt top hits

e value

%identity

Alignment

B0Z4L3 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic

4.2e-22

94.55

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Query:  MLSTDSYSTVRGVDKLIPVDVYLPGCSPKPEAIIDAITKLRKKISREIYEDRIKS
        M STDSYSTVRGVDKLIPVDVYLPGC PKPEAIIDAITKLRKKISREIYEDRI+S
Subjt:  MLSTDSYSTVRGVDKLIPVDVYLPGCSPKPEAIIDAITKLRKKISREIYEDRIKS

Q0G9V8 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic

2.5e-22

94.55

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Query:  MLSTDSYSTVRGVDKLIPVDVYLPGCSPKPEAIIDAITKLRKKISREIYEDRIKS
        M STDSYSTVRGVDKLIPVDVYLPGC PKPEA+IDAITKLRKKISREIYEDRIKS
Subjt:  MLSTDSYSTVRGVDKLIPVDVYLPGCSPKPEAIIDAITKLRKKISREIYEDRIKS

Q4VZH1 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic

2.5e-22

94.55

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Query:  MLSTDSYSTVRGVDKLIPVDVYLPGCSPKPEAIIDAITKLRKKISREIYEDRIKS
        M STDSYSTVRGVDKLIPVDVYLPGC PKPEA+IDAITKLRKKISREIYEDRIKS
Subjt:  MLSTDSYSTVRGVDKLIPVDVYLPGCSPKPEAIIDAITKLRKKISREIYEDRIKS

Q68S02 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic

2.5e-22

94.55

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Query:  MLSTDSYSTVRGVDKLIPVDVYLPGCSPKPEAIIDAITKLRKKISREIYEDRIKS
        M STDSYSTVRGVDKLIPVDVYLPGC PKPEA+IDAITKLRKKISREIYEDRIKS
Subjt:  MLSTDSYSTVRGVDKLIPVDVYLPGCSPKPEAIIDAITKLRKKISREIYEDRIKS

Q9M3M0 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic

2.5e-22

94.55

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Query:  MLSTDSYSTVRGVDKLIPVDVYLPGCSPKPEAIIDAITKLRKKISREIYEDRIKS
        M STDSYSTVRGVDKLIPVDVYLPGC PKPEA+IDAITKLRKKISREIYEDRIKS
Subjt:  MLSTDSYSTVRGVDKLIPVDVYLPGCSPKPEAIIDAITKLRKKISREIYEDRIKS

Arabidopsis top hits

e value

%identity

Alignment

AT5G11770.1 NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial

6.0e-08

53.66

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Query:  SYSTVRGVDKLIPVDVYLPGCSPKPEAIIDAITKLRKKISR
        SYS VRG D+++PVD+Y+PGC P  EA++  + +L+KKI+R
Subjt:  SYSTVRGVDKLIPVDVYLPGCSPKPEAIIDAITKLRKKISR

ATCG00430.1 photosystem II reaction center protein G

7.3e-22

88.89

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Query:  MLSTDSYSTVRGVDKLIPVDVYLPGCSPKPEAIIDAITKLRKKISREIYEDRIK
        M STDSYSTVRGVDKLIPVDVYLPGC PKPEA+IDAITKLRKKI+REIY+DRI+
Subjt:  MLSTDSYSTVRGVDKLIPVDVYLPGCSPKPEAIIDAITKLRKKISREIYEDRIK

Sequences

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CDS sequence

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ATGCTCAGTACCGATTCTTATAGTACTGTTCGAGGAGTCGATAAGTTAATTCCTGTCGATGTGTATTTGCCGGGTTGTTCACCTAAACCCGAGGCTATTATAGATGCTAT
AACAAAACTTCGTAAGAAAATATCTCGAGAAATCTATGAAGATCGAATTAAGTCTCCCGTAATTCGAGTGAGATTGTCATGGCGCAAAAGCAGATATGGTTCGGTATTCC
CTTGTTCCCTGTTAGGGGTGTTCATTCAAATTGCCAAAATCAAATCGCATTTGAAACCGAACCAGAACCGAACCGAAACCGATTGTATGTGGTTCGGTTCAGTTACTACA
ATGTTGAAATTGTTTTTTATACGGCACGCCCGACGTCGGCCCGCCCAGTTGCTTCTAGTTCTAGGTTTTCCTTTTATTTTTTCTTTCAGTTTCCCGACCCTTCTTCTTCA
CGCTTTAGAGTTCATCATAGTTCCCCTTCAACTTCAATCACTCCACAGTTTCCCGACCTTTCAACTTCAATCTCTCATCGAGCACAGTTCCCCGCCGTCGCCGAGTCCCG
TGTTTCGACGTCTTCATCTCTCTCCATCTCTCTCCTGCGGCACGCCTAAAGAAACTAATCAAGCTCTGTTTAATCTCCTAGAAGCGGAAGCTGAATTAGTTGTAGGCTAT
AATGTAGAATATGCGCGGGATGTGATCCTTAATAGTCCACTGTTGGCGGAAGCCAATGTCCTGGGGCTCCAGGTTTTGGGCGGCCCATCTGGTGGGGGCAGCTATCACTG
CTGGAAGCCCCTGCGGTTGTTTGATGATAGAATTTAG

mRNA sequence

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Protein sequence

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MLSTDSYSTVRGVDKLIPVDVYLPGCSPKPEAIIDAITKLRKKISREIYEDRIKSPVIRVRLSWRKSRYGSVFPCSLLGVFIQIAKIKSHLKPNQNRTETDCMWFGSVTT
MLKLFFIRHARRRPAQLLLVLGFPFIFSFSFPTLLLHALEFIIVPLQLQSLHSFPTFQLQSLIEHSSPPSPSPVFRRLHLSPSLSCGTPKETNQALFNLLEAEAELVVGY
NVEYARDVILNSPLLAEANVLGLQVLGGPSGGGSYHCWKPLRLFDDRI

Clc10G06050 (gene) of Watermelon (cordophanus) v2 genome