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Clc10G06665 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc10G06665
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionCCHC-type domain-containing protein
Genome locationClcChr10:9164741..9166871
RNA-Seq ExpressionClc10G06665
SyntenyClc10G06665
Gene Ontology termsNA
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON94286.1 Zinc knuckle CX2CX4HX4C [Trema orientale]2.2e-1148.65Show/hide
Query:  LGNLIGKFEKVDSDEKGRCWGGSLRIQVLIDTVKPSKRGNLIKLTSMAKERWIPNTYEELLDFCCGCGCLGHTI
        LGN IGK E V+ DE GRC G  LR+ V +D  +P  +G  I+L S A   W+   YE+LL+FC  CGC+GH +
Subjt:  LGNLIGKFEKVDSDEKGRCWGGSLRIQVLIDTVKPSKRGNLIKLTSMAKERWIPNTYEELLDFCCGCGCLGHTI

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]2.6e-1236.42Show/hide
Query:  AMSLGNLIGKFEKVDSDEKGRCWGGSLRIQVLIDTVKPSKRGNLIKLTSMAKERWIPNTYEELLDFCCGCGCLGHTIKDC----LVQIEEDEVEPRFSPE
        A+ LGN IG F  VD +EKG  WG SLRI+VLID  KP +RG  I +       WIP  YE L DFC  CG +GH+  DC    L   ++      + P 
Subjt:  AMSLGNLIGKFEKVDSDEKGRCWGGSLRIQVLIDTVKPSKRGNLIKLTSMAKERWIPNTYEELLDFCCGCGCLGHTIKDC----LVQIEEDEVEPRFSPE

Query:  LREQRLIQKKNQETQGFGAEKPSPRTGPQRNSPHEK-RLVDREDESKEKQT
        L   R +  K    +G   + P+       +S + K R V+   +   +QT
Subjt:  LREQRLIQKKNQETQGFGAEKPSPRTGPQRNSPHEK-RLVDREDESKEKQT

XP_039795238.1 uncharacterized protein LOC120660688 [Panicum virgatum]2.9e-1140.43Show/hide
Query:  LQFRKYAMSLGNLIGKFEKVDSDEKGRCWGGSLRIQVLIDTVKPSKRGNLIKLTSMAKERWIPNTYEELLDFCCGCGCLGHTIKDCLVQIEEDE
        L  + +   L   IGK EKVD+D  GR WG  LR +V ID  KP +RG  I      K+ W    YE+L  +C  CG +GH+  +C    E DE
Subjt:  LQFRKYAMSLGNLIGKFEKVDSDEKGRCWGGSLRIQVLIDTVKPSKRGNLIKLTSMAKERWIPNTYEELLDFCCGCGCLGHTIKDCLVQIEEDE

XP_039815364.1 uncharacterized protein LOC120678302 [Panicum virgatum]1.7e-1141.35Show/hide
Query:  LQFRKYAMSLGNLIGKFEKVDSDEKGRCWGGSLRIQVLIDTVKPSKRGNLIKLTSMAKERWIPNTYEELLDFCCGCGCLGHTIKDCLVQIEEDEVEPRFS
        L  ++ A+ +G  +G+F +VD +      G  LR++V I+  KP +RG +I +   A+ERW P TYE L DFC  CG +GHT K CL ++   E  P F 
Subjt:  LQFRKYAMSLGNLIGKFEKVDSDEKGRCWGGSLRIQVLIDTVKPSKRGNLIKLTSMAKERWIPNTYEELLDFCCGCGCLGHTIKDCLVQIEEDEVEPRFS

Query:  PELR
         ELR
Subjt:  PELR

XP_039827601.1 uncharacterized protein LOC120689378 [Panicum virgatum]1.0e-1141.35Show/hide
Query:  LQFRKYAMSLGNLIGKFEKVDSDEKGRCWGGSLRIQVLIDTVKPSKRGNLIKLTSMAKERWIPNTYEELLDFCCGCGCLGHTIKDCLVQIEEDEVEPRFS
        L  ++ A+ +G  +G+F +VD +      G  LR++V I+  KP +RG +I +   A+ERW P TYE L DFC  CG +GHT K CL ++  +E  P F 
Subjt:  LQFRKYAMSLGNLIGKFEKVDSDEKGRCWGGSLRIQVLIDTVKPSKRGNLIKLTSMAKERWIPNTYEELLDFCCGCGCLGHTIKDCLVQIEEDEVEPRFS

Query:  PELR
         ELR
Subjt:  PELR

TrEMBL top hitse value%identityAlignment
A0A0A0LNB5 CCHC-type domain-containing protein1.3e-1244.32Show/hide
Query:  RKYAMSLGNLIGKFEKVDSDEKGRCWGGSLRIQVLIDTVKPSKRGNLIKLTSMAKERWIPNTYEELLDFCCGCGCLGHTIKDCLVQIE
        RKY ++L N I  FE+V+  E  R +G  L+++  ID  +       IKL +MAKE+ IP TYE+L DFC  CG LGH +++C V++E
Subjt:  RKYAMSLGNLIGKFEKVDSDEKGRCWGGSLRIQVLIDTVKPSKRGNLIKLTSMAKERWIPNTYEELLDFCCGCGCLGHTIKDCLVQIE

A0A6J1DU55 uncharacterized protein LOC1110231351.3e-1236.42Show/hide
Query:  AMSLGNLIGKFEKVDSDEKGRCWGGSLRIQVLIDTVKPSKRGNLIKLTSMAKERWIPNTYEELLDFCCGCGCLGHTIKDC----LVQIEEDEVEPRFSPE
        A+ LGN IG F  VD +EKG  WG SLRI+VLID  KP +RG  I +       WIP  YE L DFC  CG +GH+  DC    L   ++      + P 
Subjt:  AMSLGNLIGKFEKVDSDEKGRCWGGSLRIQVLIDTVKPSKRGNLIKLTSMAKERWIPNTYEELLDFCCGCGCLGHTIKDC----LVQIEEDEVEPRFSPE

Query:  LREQRLIQKKNQETQGFGAEKPSPRTGPQRNSPHEK-RLVDREDESKEKQT
        L   R +  K    +G   + P+       +S + K R V+   +   +QT
Subjt:  LREQRLIQKKNQETQGFGAEKPSPRTGPQRNSPHEK-RLVDREDESKEKQT

A0A803QFF2 Uncharacterized protein7.5e-1338.1Show/hide
Query:  RKYAMSLGNLIGKFEKVDSDEKGRCWGGSLRIQVLIDTVKPSKRGNLIKLTSMAKERWIPNTYEELLDFCCGCGCLGHTIKDC--LVQIEEDEVEPR--F
        R  A++LGN+IG+F +V +D     WG  LRI+V ID  KP +RG  I+L  +  + W+   YE L ++C  CGCLGH  + C   +++ ++ +EP   +
Subjt:  RKYAMSLGNLIGKFEKVDSDEKGRCWGGSLRIQVLIDTVKPSKRGNLIKLTSMAKERWIPNTYEELLDFCCGCGCLGHTIKDC--LVQIEEDEVEPR--F

Query:  SPELR
         PE++
Subjt:  SPELR

A0A803QHU2 Uncharacterized protein3.4e-1344.32Show/hide
Query:  RKYAMSLGNLIGKFEKVDSDEKGRCWGGSLRIQVLIDTVKPSKRGNLIKLTSMAKERWIPNTYEELLDFCCGCGCLGHTIKDCLVQIE
        R  A +LGN+IG+F +V  D     WG  LRI+V +   KP  RG +IKL  +  E W+   YE L +FC  CGCLGH  K C+  +E
Subjt:  RKYAMSLGNLIGKFEKVDSDEKGRCWGGSLRIQVLIDTVKPSKRGNLIKLTSMAKERWIPNTYEELLDFCCGCGCLGHTIKDCLVQIE

A0A803QQH9 Uncharacterized protein5.7e-1344.19Show/hide
Query:  AMSLGNLIGKFEKVDSDEKGRCWGGSLRIQVLIDTVKPSKRGNLIKLTSMAKERWIPNTYEELLDFCCGCGCLGHTIKDCLVQIEE
        A++LGN+IGKFE V  D     WG  LRI+VL+D  KP KRG +I L  +  + W+   YE L ++C  CG +GH    C V +E+
Subjt:  AMSLGNLIGKFEKVDSDEKGRCWGGSLRIQVLIDTVKPSKRGNLIKLTSMAKERWIPNTYEELLDFCCGCGCLGHTIKDCLVQIEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTGGAAAAAGCGAGCTTGTGGTGATCAGGCAATTCAAATTCTAGTGTTGCTATTACTTTGGAAGAAAGGAAAGAGGGTGGAGGGTTTCTACAACATGGCA
CAAAATTCTGAATTAGGATCGGTAGAGACTACTGGACAATCTTGTCATGAAGAATGGAAACATTTTGTTGGAATGTCCGACAAGATTGTGGCGTCGAAACTGTCG
ATGGACGGAATTCAATTTCATGGGGGAGACACCATCTATATTCATATGGAGATGTTCAGAGACAAGATGCCAAAGATATGGAGAAACATCCAGAACTCCTTGTTA
GTGTTTAATGAGCTGAAAACCAATTGTAGTTTCTCAGAACTTCAATTCAGGAAATATGCTATGAGTTTAGGGAACCTTATAGGCAAGTTTGAGAAAGTTGATTCA
GATGAGAAGGGAAGATGTTGGGGCGGTTCCCTTCGAATTCAAGTTTTGATTGACACCGTTAAACCTTCAAAGAGGGGTAACCTAATCAAACTAACTTCCATGGCC
AAAGAACGATGGATCCCAAATACTTATGAGGAGCTTCTAGATTTTTGTTGTGGTTGTGGGTGTCTAGGGCACACGATTAAAGACTGTTTAGTCCAGATAGAGGAG
GATGAGGTGGAACCTAGATTTAGTCCTGAACTCCGTGAACAAAGATTGATTCAAAAGAAAAATCAAGAAACGCAAGGTTTTGGTGCCGAGAAGCCTTCACCAAGG
ACAGGACCGCAAAGGAACTCTCCTCATGAGAAAAGGCTGGTAGATCGAGAGGATGAAAGTAAGGAGAAGCAAACGGTGGCACTTGACCTTGACAGTGAACGAAAC
AGTGTGGAAACTATCCGACCGGCAGCTACAAAGAGTATTCTCAGGACGGCGACGATGCAGCGTTACGCGGAGGAGAGATTCAAAAATTCAGGAGGGAATCAGCGA
CGAAAATCTCGACATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTGGAAAAAGCGAGCTTGTGGTGATCAGGCAATTCAAATTCTAGTGTTGCTATTACTTTGGAAGAAAGGAAAGAGGGTGGAGGGTTTCTACAACATGGCA
CAAAATTCTGAATTAGGATCGGTAGAGACTACTGGACAATCTTGTCATGAAGAATGGAAACATTTTGTTGGAATGTCCGACAAGATTGTGGCGTCGAAACTGTCG
ATGGACGGAATTCAATTTCATGGGGGAGACACCATCTATATTCATATGGAGATGTTCAGAGACAAGATGCCAAAGATATGGAGAAACATCCAGAACTCCTTGTTA
GTGTTTAATGAGCTGAAAACCAATTGTAGTTTCTCAGAACTTCAATTCAGGAAATATGCTATGAGTTTAGGGAACCTTATAGGCAAGTTTGAGAAAGTTGATTCA
GATGAGAAGGGAAGATGTTGGGGCGGTTCCCTTCGAATTCAAGTTTTGATTGACACCGTTAAACCTTCAAAGAGGGGTAACCTAATCAAACTAACTTCCATGGCC
AAAGAACGATGGATCCCAAATACTTATGAGGAGCTTCTAGATTTTTGTTGTGGTTGTGGGTGTCTAGGGCACACGATTAAAGACTGTTTAGTCCAGATAGAGGAG
GATGAGGTGGAACCTAGATTTAGTCCTGAACTCCGTGAACAAAGATTGATTCAAAAGAAAAATCAAGAAACGCAAGGTTTTGGTGCCGAGAAGCCTTCACCAAGG
ACAGGACCGCAAAGGAACTCTCCTCATGAGAAAAGGCTGGTAGATCGAGAGGATGAAAGTAAGGAGAAGCAAACGGTGGCACTTGACCTTGACAGTGAACGAAAC
AGTGTGGAAACTATCCGACCGGCAGCTACAAAGAGTATTCTCAGGACGGCGACGATGCAGCGTTACGCGGAGGAGAGATTCAAAAATTCAGGAGGGAATCAGCGA
CGAAAATCTCGACATTAA
Protein sequenceShow/hide protein sequence
MAWKKRACGDQAIQILVLLLLWKKGKRVEGFYNMAQNSELGSVETTGQSCHEEWKHFVGMSDKIVASKLSMDGIQFHGGDTIYIHMEMFRDKMPKIWRNIQNSLL
VFNELKTNCSFSELQFRKYAMSLGNLIGKFEKVDSDEKGRCWGGSLRIQVLIDTVKPSKRGNLIKLTSMAKERWIPNTYEELLDFCCGCGCLGHTIKDCLVQIEE
DEVEPRFSPELREQRLIQKKNQETQGFGAEKPSPRTGPQRNSPHEKRLVDREDESKEKQTVALDLDSERNSVETIRPAATKSILRTATMQRYAEERFKNSGGNQR
RKSRH