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Clc10G06700 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc10G06700
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionIdentified as a screen for stress-responsive genes.
Genome locationClcChr10:9230576..9231889
RNA-Seq ExpressionClc10G06700
SyntenyClc10G06700
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7015455.1 hypothetical protein SDJN02_23091, partial [Cucurbita argyrosperma subsp. argyrosperma]2.0e-3072.5Show/hide
Query:  SREEEEEEEEEEKEYEYGG--TGTVARLSRNSSVSSSASGFQSAVKRALSMRRSSSVAERYCRIHDQFATFATSMEDDEMEGG------KTGGSVRKEKK
        SR  EEEEEEEE+E EYGG  +   A LSRN+SVSSS SGF SAVKRALSMRRSSSVAERYCRIHDQFAT A+ ++DDEME G      KTGGSV+K KK
Subjt:  SREEEEEEEEEEKEYEYGG--TGTVARLSRNSSVSSSASGFQSAVKRALSMRRSSSVAERYCRIHDQFATFATSMEDDEMEGG------KTGGSVRKEKK

Query:  KKKKTATGKMVRACKRLFGL
        KKKK + GK+VRACKRLFG+
Subjt:  KKKKTATGKMVRACKRLFGL

KAG7031359.1 hypothetical protein SDJN02_05399, partial [Cucurbita argyrosperma subsp. argyrosperma]2.0e-2265.45Show/hide
Query:  EEEEKEYEYGGTGTVARLSRNSSVSSSASGFQSAVKRALSMRRSSSVAERYCRIHDQFATFATSMEDDEMEGGKT------GGSVRKEKKKKKKTATGKM
        EEEE EY    T T + L RN SVS+SASGF SAVKRALSMRRSSSVAERY RIHDQF T A+ ++DDE+EG ++      GGSVR    KKK  A GK+
Subjt:  EEEEKEYEYGGTGTVARLSRNSSVSSSASGFQSAVKRALSMRRSSSVAERYCRIHDQFATFATSMEDDEMEGGKT------GGSVRKEKKKKKKTATGKM

Query:  VRACKRLFGL
        VRACKRLFGL
Subjt:  VRACKRLFGL

KGN56255.1 hypothetical protein Csa_011668 [Cucumis sativus]1.1e-2566.13Show/hide
Query:  QPVTGGSREEEEEEEEEEKEYEYGGTGTVARLSRNSSVSSSASGFQSAVKRALSMRRSSSVAERYCRIHDQFATFATSMEDDEMEG------GKTGGSVR
        +P  G   EE+EE  ++E +   G T   A L RNSSVSSS SGFQSAVKRALSMRRSSSVAERYCRIHDQFATFA+ +EDDEMEG      GK GGS  
Subjt:  QPVTGGSREEEEEEEEEEKEYEYGGTGTVARLSRNSSVSSSASGFQSAVKRALSMRRSSSVAERYCRIHDQFATFATSMEDDEMEG------GKTGGSVR

Query:  KEKKKKKKTATGKMVRACKRLFGL
          KKKKKK A  K+VRACKR+FGL
Subjt:  KEKKKKKKTATGKMVRACKRLFGL

XP_022136741.1 uncharacterized protein LOC111008371 [Momordica charantia]4.7e-2469.09Show/hide
Query:  EEEEKEYEYGGTGTVARLSRNSSVSSSASGFQSAVKRALSMRRSSSVAERYCRIHDQFATFATSMEDDEMEGG------KTGGSVRKEKKKKKKTATGKM
        EEEE EY  GG   VA LSRNSSVSSSASG  SAVKRALSMRRSSSVAERYCRIHDQFAT A+ ++D+E+  G      K+ GSVR    +KKK A GK+
Subjt:  EEEEKEYEYGGTGTVARLSRNSSVSSSASGFQSAVKRALSMRRSSSVAERYCRIHDQFATFATSMEDDEMEGG------KTGGSVRKEKKKKKKTATGKM

Query:  VRACKRLFGL
        VRACKRLFGL
Subjt:  VRACKRLFGL

XP_022929198.1 uncharacterized protein LOC111435863 [Cucurbita moschata]1.7e-2971.67Show/hide
Query:  SREEEEEEEEEEKEYEYGG--TGTVARLSRNSSVSSSASGFQSAVKRALSMRRSSSVAERYCRIHDQFATFATSMEDDEMEGG------KTGGSVRKEKK
        SR  EEEEEEEE+E EYGG  +   A LSRN+SVSSS SGF SAVKRALSMRRSSSVAERYCRIHDQFAT A+ ++DDEME G      KTGGSV+K KK
Subjt:  SREEEEEEEEEEKEYEYGG--TGTVARLSRNSSVSSSASGFQSAVKRALSMRRSSSVAERYCRIHDQFATFATSMEDDEMEGG------KTGGSVRKEKK

Query:  KKKKTATGKMVRACKRLFGL
        KKKK +  K+VRACKRLFG+
Subjt:  KKKKTATGKMVRACKRLFGL

TrEMBL top hitse value%identityAlignment
A0A0A0L2N9 Uncharacterized protein5.4e-2666.13Show/hide
Query:  QPVTGGSREEEEEEEEEEKEYEYGGTGTVARLSRNSSVSSSASGFQSAVKRALSMRRSSSVAERYCRIHDQFATFATSMEDDEMEG------GKTGGSVR
        +P  G   EE+EE  ++E +   G T   A L RNSSVSSS SGFQSAVKRALSMRRSSSVAERYCRIHDQFATFA+ +EDDEMEG      GK GGS  
Subjt:  QPVTGGSREEEEEEEEEEKEYEYGGTGTVARLSRNSSVSSSASGFQSAVKRALSMRRSSSVAERYCRIHDQFATFATSMEDDEMEG------GKTGGSVR

Query:  KEKKKKKKTATGKMVRACKRLFGL
          KKKKKK A  K+VRACKR+FGL
Subjt:  KEKKKKKKTATGKMVRACKRLFGL

A0A5A7V402 Uncharacterized protein1.1e-2167.57Show/hide
Query:  EEEEEEEEEEKEYEYGGTGTVARLSRNSSVSSSASGFQSAVKRALSMRRSSSVAERYCRIHDQFATFATSMEDDEMEG------GKTGGSVRKEKKKKKK
        EE+EE  ++E +   GGT   A LSRNSSVSSS SGFQSAVKRALSMRRSSSVAERYCRIHDQFATFA+ +EDDE+EG      GK GGS    KKKKK 
Subjt:  EEEEEEEEEEKEYEYGGTGTVARLSRNSSVSSSASGFQSAVKRALSMRRSSSVAERYCRIHDQFATFATSMEDDEMEG------GKTGGSVRKEKKKKKK

Query:  TATGKMVRACK
         A GK+VRA +
Subjt:  TATGKMVRACK

A0A5N6QLE4 Uncharacterized protein4.7e-1449.24Show/hide
Query:  SEPKESTAGTTAQPVTGGSREEEEEEEEEEKEYEYGGTGTV--ARLSRNSSVSSSASGFQSAVKRALSMRRSSSVAERYCRIHDQFATFATSMEDDEMEG
        S+ K++ +  T++P  G   +E   E+E+      GG G    A LSR+ SVSS+ SGFQSAVKRA S++RSSSV+ERYCRI+DQ  T A+ ++DD+ EG
Subjt:  SEPKESTAGTTAQPVTGGSREEEEEEEEEEKEYEYGGTGTV--ARLSRNSSVSSSASGFQSAVKRALSMRRSSSVAERYCRIHDQFATFATSMEDDEMEG

Query:  GKTGGSVRKEKKKKKKTATGKMVRACKRLFGL
          T  + R+  KKKK    GK+++ACKRLFGL
Subjt:  GKTGGSVRKEKKKKKKTATGKMVRACKRLFGL

A0A6J1C4C9 uncharacterized protein LOC1110083712.3e-2469.09Show/hide
Query:  EEEEKEYEYGGTGTVARLSRNSSVSSSASGFQSAVKRALSMRRSSSVAERYCRIHDQFATFATSMEDDEMEGG------KTGGSVRKEKKKKKKTATGKM
        EEEE EY  GG   VA LSRNSSVSSSASG  SAVKRALSMRRSSSVAERYCRIHDQFAT A+ ++D+E+  G      K+ GSVR    +KKK A GK+
Subjt:  EEEEKEYEYGGTGTVARLSRNSSVSSSASGFQSAVKRALSMRRSSSVAERYCRIHDQFATFATSMEDDEMEGG------KTGGSVRKEKKKKKKTATGKM

Query:  VRACKRLFGL
        VRACKRLFGL
Subjt:  VRACKRLFGL

A0A6J1ERE9 uncharacterized protein LOC1114358638.1e-3071.67Show/hide
Query:  SREEEEEEEEEEKEYEYGG--TGTVARLSRNSSVSSSASGFQSAVKRALSMRRSSSVAERYCRIHDQFATFATSMEDDEMEGG------KTGGSVRKEKK
        SR  EEEEEEEE+E EYGG  +   A LSRN+SVSSS SGF SAVKRALSMRRSSSVAERYCRIHDQFAT A+ ++DDEME G      KTGGSV+K KK
Subjt:  SREEEEEEEEEEKEYEYGG--TGTVARLSRNSSVSSSASGFQSAVKRALSMRRSSSVAERYCRIHDQFATFATSMEDDEMEGG------KTGGSVRKEKK

Query:  KKKKTATGKMVRACKRLFGL
        KKKK +  K+VRACKRLFG+
Subjt:  KKKKTATGKMVRACKRLFGL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G24275.1 Identified as a screen for stress-responsive genes.1.7e-0847.83Show/hide
Query:  RLSRNSSVSSSASGFQSAVKRALSMRRSSSVAERYCRIHDQFATFATSMEDDEMEGGKTGGSVRKEKKKKKKTATG----KMVRACKRLFGL
        +LSRN SVS+SA    S +K  +SMRRSSSV+ERYCRI+DQ  + AT+      EG +      KEK  KKK +        V+ACKR FG+
Subjt:  RLSRNSSVSSSASGFQSAVKRALSMRRSSSVAERYCRIHDQFATFATSMEDDEMEGGKTGGSVRKEKKKKKKTATG----KMVRACKRLFGL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGAACCGAAGGAATCGACCGCGGGAACCACCGCACAGCCGGTTACCGGAGGAAGTAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGGAATACGAA
TACGGCGGGACCGGGACCGTGGCTAGGCTTAGTCGAAACAGCTCTGTTTCTTCATCGGCTTCCGGATTTCAGTCGGCAGTGAAGAGAGCATTATCGATGAGGAGA
TCTTCATCCGTAGCGGAACGGTACTGTAGGATTCACGATCAGTTCGCGACATTTGCAACGTCGATGGAGGATGATGAAATGGAAGGAGGAAAAACAGGAGGATCT
GTGAGGAAGGAGAAGAAGAAGAAGAAGAAGACGGCGACAGGGAAAATGGTTAGAGCATGTAAGCGACTTTTTGGACTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCAGAACCGAAGGAATCGACCGCGGGAACCACCGCACAGCCGGTTACCGGAGGAAGTAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGGAATACGAA
TACGGCGGGACCGGGACCGTGGCTAGGCTTAGTCGAAACAGCTCTGTTTCTTCATCGGCTTCCGGATTTCAGTCGGCAGTGAAGAGAGCATTATCGATGAGGAGA
TCTTCATCCGTAGCGGAACGGTACTGTAGGATTCACGATCAGTTCGCGACATTTGCAACGTCGATGGAGGATGATGAAATGGAAGGAGGAAAAACAGGAGGATCT
GTGAGGAAGGAGAAGAAGAAGAAGAAGAAGACGGCGACAGGGAAAATGGTTAGAGCATGTAAGCGACTTTTTGGACTGTAGTTTTTTGAATTGATCCGTAAAGCT
AAAATTGTTATTGATGAATTGTTGAAGAGAGGAAGATGAGTTTTTTTTTTTTT
Protein sequenceShow/hide protein sequence
MSEPKESTAGTTAQPVTGGSREEEEEEEEEEKEYEYGGTGTVARLSRNSSVSSSASGFQSAVKRALSMRRSSSVAERYCRIHDQFATFATSMEDDEMEGGKTGGS
VRKEKKKKKKTATGKMVRACKRLFGL