; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc10G06950 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc10G06950
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPMD domain-containing protein
Genome locationClcChr10:9607956..9610773
RNA-Seq ExpressionClc10G06950
SyntenyClc10G06950
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034815.1 hypothetical protein E6C27_scaffold213G00490 [Cucumis melo var. makuwa]1.7e-2056.25Show/hide
Query:  WQDLDDDMTFPELSIEVPFHQGEKVWILQSSIHNKATTPDRLLTLERRMLEGETHWNAIVKVPGEFTFTDCYWEWPEFVV
        W  LD++   P LS+EVP  +G+  W+LQSSIHN+A    R LTL +R++EG+T W  + KVPGEF FTDCYWEW E VV
Subjt:  WQDLDDDMTFPELSIEVPFHQGEKVWILQSSIHNKATTPDRLLTLERRMLEGETHWNAIVKVPGEFTFTDCYWEWPEFVV

KAA0047478.1 hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa]2.2e-2056.25Show/hide
Query:  WQDLDDDMTFPELSIEVPFHQGEKVWILQSSIHNKATTPDRLLTLERRMLEGETHWNAIVKVPGEFTFTDCYWEWPEFVV
        W  LD++   P LS+EVP  +G+  W+LQSSIHN+A    R LTL +R++EG+T W  + KVPGEF FTDCYWEW E VV
Subjt:  WQDLDDDMTFPELSIEVPFHQGEKVWILQSSIHNKATTPDRLLTLERRMLEGETHWNAIVKVPGEFTFTDCYWEWPEFVV

KAA0048380.1 putative mitochondrial protein [Cucumis melo var. makuwa]7.7e-2149.02Show/hide
Query:  QPPKGG-GVIMSTPIEDKYV--WQDLDDDMTFPELSIEVPFHQGEKVWILQSSIHNKATTPDRLLTLERRMLEGETHWNAIVKVPGEFTFTDCYWEWPEF
        QP + G  +I+ TP    +   W  LD++   P LS+E+P  +G+  W+LQSSIHN+A    R LTL +R++EG+T W  + KVPGEF FTDCYWEW E 
Subjt:  QPPKGG-GVIMSTPIEDKYV--WQDLDDDMTFPELSIEVPFHQGEKVWILQSSIHNKATTPDRLLTLERRMLEGETHWNAIVKVPGEFTFTDCYWEWPEF

Query:  VV
        VV
Subjt:  VV

KAA0050516.1 hypothetical protein E6C27_scaffold175G001600 [Cucumis melo var. makuwa]1.7e-2050Show/hide
Query:  QPPKGG-GVIMSTPIEDKYV--WQDLDDDMTFPELSIEVPFHQGEKVWILQSSIHNKATTPDRLLTLERRMLEGETHWNAIVKVPGEFTFTDCYWEWPEF
        QP + G  +IM  P    +   W  LD++   P LS+E+P  +G+  WILQSSIHN+A    R LTL +R++EG+T W  + KVPGEF FTDCYWEW E 
Subjt:  QPPKGG-GVIMSTPIEDKYV--WQDLDDDMTFPELSIEVPFHQGEKVWILQSSIHNKATTPDRLLTLERRMLEGETHWNAIVKVPGEFTFTDCYWEWPEF

Query:  VV
        VV
Subjt:  VV

TYK19639.1 hypothetical protein E5676_scaffold242G00260 [Cucumis melo var. makuwa]2.2e-2056.25Show/hide
Query:  WQDLDDDMTFPELSIEVPFHQGEKVWILQSSIHNKATTPDRLLTLERRMLEGETHWNAIVKVPGEFTFTDCYWEWPEFVV
        W  LD++   P LS+EVP  +G+  W+LQSSIHN+A    R LTL +R++EG+T W  + KVPGEF FTDCYWEW E VV
Subjt:  WQDLDDDMTFPELSIEVPFHQGEKVWILQSSIHNKATTPDRLLTLERRMLEGETHWNAIVKVPGEFTFTDCYWEWPEFVV

TrEMBL top hitse value%identityAlignment
A0A5A7T019 PMD domain-containing protein8.3e-2156.25Show/hide
Query:  WQDLDDDMTFPELSIEVPFHQGEKVWILQSSIHNKATTPDRLLTLERRMLEGETHWNAIVKVPGEFTFTDCYWEWPEFVV
        W  LD++   P LS+EVP  +G+  W+LQSSIHN+A    R LTL +R++EG+T W  + KVPGEF FTDCYWEW E VV
Subjt:  WQDLDDDMTFPELSIEVPFHQGEKVWILQSSIHNKATTPDRLLTLERRMLEGETHWNAIVKVPGEFTFTDCYWEWPEFVV

A0A5A7TFC8 PMD domain-containing protein1.1e-2056.25Show/hide
Query:  WQDLDDDMTFPELSIEVPFHQGEKVWILQSSIHNKATTPDRLLTLERRMLEGETHWNAIVKVPGEFTFTDCYWEWPEFVV
        W  LD++   P LS+EVP  +G+  W+LQSSIHN+A    R LTL +R++EG+T W  + KVPGEF FTDCYWEW E VV
Subjt:  WQDLDDDMTFPELSIEVPFHQGEKVWILQSSIHNKATTPDRLLTLERRMLEGETHWNAIVKVPGEFTFTDCYWEWPEFVV

A0A5A7TX42 Uncharacterized protein1.1e-2056.25Show/hide
Query:  WQDLDDDMTFPELSIEVPFHQGEKVWILQSSIHNKATTPDRLLTLERRMLEGETHWNAIVKVPGEFTFTDCYWEWPEFVV
        W  LD++   P LS+EVP  +G+  W+LQSSIHN+A    R LTL +R++EG+T W  + KVPGEF FTDCYWEW E VV
Subjt:  WQDLDDDMTFPELSIEVPFHQGEKVWILQSSIHNKATTPDRLLTLERRMLEGETHWNAIVKVPGEFTFTDCYWEWPEFVV

A0A5A7TZ08 Putative mitochondrial protein3.7e-2149.02Show/hide
Query:  QPPKGG-GVIMSTPIEDKYV--WQDLDDDMTFPELSIEVPFHQGEKVWILQSSIHNKATTPDRLLTLERRMLEGETHWNAIVKVPGEFTFTDCYWEWPEF
        QP + G  +I+ TP    +   W  LD++   P LS+E+P  +G+  W+LQSSIHN+A    R LTL +R++EG+T W  + KVPGEF FTDCYWEW E 
Subjt:  QPPKGG-GVIMSTPIEDKYV--WQDLDDDMTFPELSIEVPFHQGEKVWILQSSIHNKATTPDRLLTLERRMLEGETHWNAIVKVPGEFTFTDCYWEWPEF

Query:  VV
        VV
Subjt:  VV

A0A5A7U8L3 PMD domain-containing protein8.3e-2150Show/hide
Query:  QPPKGG-GVIMSTPIEDKYV--WQDLDDDMTFPELSIEVPFHQGEKVWILQSSIHNKATTPDRLLTLERRMLEGETHWNAIVKVPGEFTFTDCYWEWPEF
        QP + G  +IM  P    +   W  LD++   P LS+E+P  +G+  WILQSSIHN+A    R LTL +R++EG+T W  + KVPGEF FTDCYWEW E 
Subjt:  QPPKGG-GVIMSTPIEDKYV--WQDLDDDMTFPELSIEVPFHQGEKVWILQSSIHNKATTPDRLLTLERRMLEGETHWNAIVKVPGEFTFTDCYWEWPEF

Query:  VV
        VV
Subjt:  VV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTCTCACTCAATTCTCTCCTTCTTGTGCCTCTTTAGAATGTTGCGCTCGGATTTTAGCGCCGCGGTAGTGCCATTTCGACGCCACAATGCTATGATGCGTCCAAA
ACAGACGGTCGCCTATGCAAGTGGAGCCTTCACTGCCACTTTACTCGTGGATTGTTTGATACTAGTCTCTGTTATTCTTCCTTCACCACCCATTGCTACTATCGGAAGTT
GCAGAACGTCGTTAGAGGATCGTGCCGAAGTTAGAAACCGTCCAGTTGCTGTCTTGCTGTTAGAGACGGTCGCCTGTGCAAGTGGAGCCTTCACTGCCACTTTACTCATG
GATTGTTTGCTGCTAGTCTCTGTTATTTTGCCTTCATCGTCCACTATTGCTATCGGAAGCCACGGAACATCGTTAGAGGATTGTGCCGAAGTTAGACACCATCTGGTTGC
TATCCTGCTGTCGGTTGGAGCTTTTTTCGGCTTACAAACTTTCATATTGTTTTGCCCAAAGGTTGATTTAATGCCTCCACTGTGGACTTGGGATGACCCCGGGAAGATCT
TAGCGATTGTGGATCTTGGCGACTGTGGCTTGCCGTCTCCCTACAGCAATGACCCCAAGAAAATCTTAGCAATTGTGGATCTTGGCAACTGTGGCTCGTCGTCTCCCTAC
AGGGATGACATTGGGAAGATCTTAGCGATTGTGGCTCGCCGTCTCCCTACAAGTAAGGATAACCCTGAGGATCCAAACGACCCTAGTGTTGGCCTTAGGGTTGGGCAGCC
GCCTAAGGGTGGTGGTGTCATAATGTCAACACCCATTGAGGACAAATATGTTTGGCAAGACTTAGATGACGATATGACCTTTCCTGAACTATCCATTGAGGTACCCTTTC
ATCAAGGGGAAAAGGTGTGGATATTACAATCTTCGATTCATAACAAAGCCACTACTCCAGATCGGTTGTTAACTCTCGAACGACGTATGCTCGAAGGTGAGACCCATTGG
AATGCCATCGTGAAAGTCCCTGGTGAATTCACTTTTACCGACTGCTATTGGGAATGGCCAGAGTTTGTAGTTAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACTCTCACTCAATTCTCTCCTTCTTGTGCCTCTTTAGAATGTTGCGCTCGGATTTTAGCGCCGCGGTAGTGCCATTTCGACGCCACAATGCTATGATGCGTCCAAA
ACAGACGGTCGCCTATGCAAGTGGAGCCTTCACTGCCACTTTACTCGTGGATTGTTTGATACTAGTCTCTGTTATTCTTCCTTCACCACCCATTGCTACTATCGGAAGTT
GCAGAACGTCGTTAGAGGATCGTGCCGAAGTTAGAAACCGTCCAGTTGCTGTCTTGCTGTTAGAGACGGTCGCCTGTGCAAGTGGAGCCTTCACTGCCACTTTACTCATG
GATTGTTTGCTGCTAGTCTCTGTTATTTTGCCTTCATCGTCCACTATTGCTATCGGAAGCCACGGAACATCGTTAGAGGATTGTGCCGAAGTTAGACACCATCTGGTTGC
TATCCTGCTGTCGGTTGGAGCTTTTTTCGGCTTACAAACTTTCATATTGTTTTGCCCAAAGGTTGATTTAATGCCTCCACTGTGGACTTGGGATGACCCCGGGAAGATCT
TAGCGATTGTGGATCTTGGCGACTGTGGCTTGCCGTCTCCCTACAGCAATGACCCCAAGAAAATCTTAGCAATTGTGGATCTTGGCAACTGTGGCTCGTCGTCTCCCTAC
AGGGATGACATTGGGAAGATCTTAGCGATTGTGGCTCGCCGTCTCCCTACAAGTAAGGATAACCCTGAGGATCCAAACGACCCTAGTGTTGGCCTTAGGGTTGGGCAGCC
GCCTAAGGGTGGTGGTGTCATAATGTCAACACCCATTGAGGACAAATATGTTTGGCAAGACTTAGATGACGATATGACCTTTCCTGAACTATCCATTGAGGTACCCTTTC
ATCAAGGGGAAAAGGTGTGGATATTACAATCTTCGATTCATAACAAAGCCACTACTCCAGATCGGTTGTTAACTCTCGAACGACGTATGCTCGAAGGTGAGACCCATTGG
AATGCCATCGTGAAAGTCCCTGGTGAATTCACTTTTACCGACTGCTATTGGGAATGGCCAGAGTTTGTAGTTAGTTGA
Protein sequenceShow/hide protein sequence
MNSHSILSFLCLFRMLRSDFSAAVVPFRRHNAMMRPKQTVAYASGAFTATLLVDCLILVSVILPSPPIATIGSCRTSLEDRAEVRNRPVAVLLLETVACASGAFTATLLM
DCLLLVSVILPSSSTIAIGSHGTSLEDCAEVRHHLVAILLSVGAFFGLQTFILFCPKVDLMPPLWTWDDPGKILAIVDLGDCGLPSPYSNDPKKILAIVDLGNCGSSSPY
RDDIGKILAIVARRLPTSKDNPEDPNDPSVGLRVGQPPKGGGVIMSTPIEDKYVWQDLDDDMTFPELSIEVPFHQGEKVWILQSSIHNKATTPDRLLTLERRMLEGETHW
NAIVKVPGEFTFTDCYWEWPEFVVS