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Clc10G07120 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc10G07120
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionDNA-directed RNA polymerase subunit beta''
Genome locationClcChr10:9994303..9995005
RNA-Seq ExpressionClc10G07120
SyntenyClc10G07120
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0006412 - translation (biological process)
GO:0006754 - ATP biosynthetic process (biological process)
GO:1902600 - proton transmembrane transport (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0045259 - proton-transporting ATP synthase complex (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0031090 - organelle membrane (cellular component)
GO:0033177 - proton-transporting two-sector ATPase complex, proton-transporting domain (cellular component)
GO:0015078 - proton transmembrane transporter activity (molecular function)
GO:0032559 - adenyl ribonucleotide binding (molecular function)
GO:0003677 - DNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR042102 - RNA polymerase Rpb1, domain 3 superfamily
IPR007066 - RNA polymerase Rpb1, domain 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4348577.1 hypothetical protein F8388_000256 [Cannabis sativa]8.3e-6363.89Show/hide
Query:  ERGILLDSPLWLRWRLDQRIIASREAPIEVHYESLGTHHEIYG---------------------------------------------------------
        ++ I LDSPLWLRWRLDQR++ SREAPIEVHYESLGT+HEIYG                                                         
Subjt:  ERGILLDSPLWLRWRLDQRIIASREAPIEVHYESLGTHHEIYG---------------------------------------------------------

Query:  -TTGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNNVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLL
            PEFL ESRSRKGSF IIDSN LSNPT +NMEVLMAERA LVFHN VIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGF+QATATSISLGIDDLL
Subjt:  -TTGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNNVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLL

Query:  TIPSKGWLVQDAEQQS
        TIPSKGWLVQDAEQQS
Subjt:  TIPSKGWLVQDAEQQS

KAF4359999.1 hypothetical protein F8388_004506 [Cannabis sativa]3.4e-6475.71Show/hide
Query:  ERGILLDSPLWLRWRLDQRIIASREAPIEVHYESLGTHHEIYG-------------------TTGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMA
        ++ I LDSPLWLRWRLDQR+  SREAPIEVHYESLGT+HEIYG                      PEFL +SRSRKGSF IIDSN LSNPT +NMEVLMA
Subjt:  ERGILLDSPLWLRWRLDQRIIASREAPIEVHYESLGTHHEIYG-------------------TTGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMA

Query:  ERADLVFHNNVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS
        ER  LVFHN VIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLG +QATATS SLGIDDLLTIPSKGWLVQDAEQQS
Subjt:  ERADLVFHNNVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS

KAG9438781.1 hypothetical protein H6P81_021261 [Aristolochia fimbriata]4.9e-6368.5Show/hide
Query:  ERGILLDSPLWLRWRLDQRIIASREAPIEVHYESLGTHHEIY---------------------------------------GTTG---PEFLRESRSRKG
        ++ I LDSPLWLRWRLDQR+IASRE PIEV YES GT+HEIY                                       G+TG   PEFLRESRSRKG
Subjt:  ERGILLDSPLWLRWRLDQRIIASREAPIEVHYESLGTHHEIY---------------------------------------GTTG---PEFLRESRSRKG

Query:  SFLIIDSNLLSNPTQRNMEVLMAERADLVFHNNVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS
        S  I DS  LSNPTQ NMEVLMAER DLVFHN VIDGTA+KRLISRLIDHFGMAYTSHILDQ+KTLGF+QATATSISLGIDDLLTIPSKGWLVQDAEQQS
Subjt:  SFLIIDSNLLSNPTQRNMEVLMAERADLVFHNNVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS

PRQ15716.1 putative DNA-directed RNA polymerase [Rosa chinensis]8.9e-6568.47Show/hide
Query:  ERGILLDSPLWLRWRLDQRIIASREAPIEVHYESLGTHHEIYG---------------------------------------------TTGPEFLRESRS
        ++ + LDSPLWLRWRLDQR+I SRE PIEVHYESLGT HEIYG                                             TT PEFL ESRS
Subjt:  ERGILLDSPLWLRWRLDQRIIASREAPIEVHYESLGTHHEIYG---------------------------------------------TTGPEFLRESRS

Query:  RKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNNVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAE
        RKGSF I DSN LSNPTQRN EVLMAERA LVFHN VIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGF+QATATSISLGIDDLLTIPSKGWLVQDAE
Subjt:  RKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNNVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAE

Query:  QQS
        QQS
Subjt:  QQS

QCE13735.1 DNA-directed RNA polymerase subunit beta' [Vigna unguiculata]9.5e-6771.21Show/hide
Query:  ERGILLDSPLWLRWRLDQRIIASREAPIEVHYESLGTHHEIYG---------------------------------------TTGPEFLRESRSRKGSFL
        ++ I LDSPLWLRWRLDQR+I SRE PIEVHYESLGT+HEIYG                                       T  PEFL ESRSRKGSF 
Subjt:  ERGILLDSPLWLRWRLDQRIIASREAPIEVHYESLGTHHEIYG---------------------------------------TTGPEFLRESRSRKGSFL

Query:  IIDSNLLSNPTQRNMEVLMAERADLVFHNNVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSF
        IIDSN LSNPTQRN EVLMAERA+LVFHN VIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGF+QATATSISLGIDDLLTIPSKGWLVQDAEQQSF
Subjt:  IIDSNLLSNPTQRNMEVLMAERADLVFHNNVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSF

TrEMBL top hitse value%identityAlignment
A0A2P6P1B5 Multifunctional fusion protein4.3e-6568.47Show/hide
Query:  ERGILLDSPLWLRWRLDQRIIASREAPIEVHYESLGTHHEIYG---------------------------------------------TTGPEFLRESRS
        ++ + LDSPLWLRWRLDQR+I SRE PIEVHYESLGT HEIYG                                             TT PEFL ESRS
Subjt:  ERGILLDSPLWLRWRLDQRIIASREAPIEVHYESLGTHHEIYG---------------------------------------------TTGPEFLRESRS

Query:  RKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNNVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAE
        RKGSF I DSN LSNPTQRN EVLMAERA LVFHN VIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGF+QATATSISLGIDDLLTIPSKGWLVQDAE
Subjt:  RKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNNVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAE

Query:  QQS
        QQS
Subjt:  QQS

A0A4D6NNC8 Multifunctional fusion protein4.6e-6771.21Show/hide
Query:  ERGILLDSPLWLRWRLDQRIIASREAPIEVHYESLGTHHEIYG---------------------------------------TTGPEFLRESRSRKGSFL
        ++ I LDSPLWLRWRLDQR+I SRE PIEVHYESLGT+HEIYG                                       T  PEFL ESRSRKGSF 
Subjt:  ERGILLDSPLWLRWRLDQRIIASREAPIEVHYESLGTHHEIYG---------------------------------------TTGPEFLRESRSRKGSFL

Query:  IIDSNLLSNPTQRNMEVLMAERADLVFHNNVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSF
        IIDSN LSNPTQRN EVLMAERA+LVFHN VIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGF+QATATSISLGIDDLLTIPSKGWLVQDAEQQSF
Subjt:  IIDSNLLSNPTQRNMEVLMAERADLVFHNNVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSF

A0A5H2Y107 Multifunctional fusion protein (Fragment)1.2e-6270.68Show/hide
Query:  ERGILLDSPLWLRWRLDQRIIASREAPIEVHYESLGTHHEIYG-----------------TTG--------PEFLRESR-------SRKGSFLIIDSNLL
        ++ I LDSPLWLRWRLDQR+I SRE PIEVHYESLGT+HEIYG                 + G        P  +   R       SRKGSF IIDSN L
Subjt:  ERGILLDSPLWLRWRLDQRIIASREAPIEVHYESLGTHHEIYG-----------------TTG--------PEFLRESR-------SRKGSFLIIDSNLL

Query:  SNPTQRNMEVLMAERADLVFHNNVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSF
        SNPTQRN EVLMAERA+LVFHN VIDGTAIKRLI RLIDHFGMAYTSHILDQ+KTLGF+QATATSISLGIDDLLTIPSKGWLVQDAEQQSF
Subjt:  SNPTQRNMEVLMAERADLVFHNNVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSF

A0A7J6DR54 Multifunctional fusion protein4.0e-6363.89Show/hide
Query:  ERGILLDSPLWLRWRLDQRIIASREAPIEVHYESLGTHHEIYG---------------------------------------------------------
        ++ I LDSPLWLRWRLDQR++ SREAPIEVHYESLGT+HEIYG                                                         
Subjt:  ERGILLDSPLWLRWRLDQRIIASREAPIEVHYESLGTHHEIYG---------------------------------------------------------

Query:  -TTGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNNVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLL
            PEFL ESRSRKGSF IIDSN LSNPT +NMEVLMAERA LVFHN VIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGF+QATATSISLGIDDLL
Subjt:  -TTGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNNVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLL

Query:  TIPSKGWLVQDAEQQS
        TIPSKGWLVQDAEQQS
Subjt:  TIPSKGWLVQDAEQQS

A0A7J6EQL9 DNA-directed RNA polymerase1.6e-6475.71Show/hide
Query:  ERGILLDSPLWLRWRLDQRIIASREAPIEVHYESLGTHHEIYG-------------------TTGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMA
        ++ I LDSPLWLRWRLDQR+  SREAPIEVHYESLGT+HEIYG                      PEFL +SRSRKGSF IIDSN LSNPT +NMEVLMA
Subjt:  ERGILLDSPLWLRWRLDQRIIASREAPIEVHYESLGTHHEIYG-------------------TTGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMA

Query:  ERADLVFHNNVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS
        ER  LVFHN VIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLG +QATATS SLGIDDLLTIPSKGWLVQDAEQQS
Subjt:  ERADLVFHNNVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS

SwissProt top hitse value%identityAlignment
A8SE78 DNA-directed RNA polymerase subunit beta''5.6e-3895.18Show/hide
Query:  MEVLMAERADLVFHNNVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS
        MEVLMAERADLVFHN  IDGTA+KRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS
Subjt:  MEVLMAERADLVFHNNVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS

Q06H07 DNA-directed RNA polymerase subunit beta''3.3e-3895.18Show/hide
Query:  MEVLMAERADLVFHNNVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS
        MEVLMAERADLVFHN VIDGTA+KRLISRLIDHFGMAYTSHILDQ+KT+GFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS
Subjt:  MEVLMAERADLVFHNNVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS

Q09G56 DNA-directed RNA polymerase subunit beta''5.6e-3895.18Show/hide
Query:  MEVLMAERADLVFHNNVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS
        MEVLMAERADLVFHN  IDGTA+KRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS
Subjt:  MEVLMAERADLVFHNNVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS

Q4VZP3 DNA-directed RNA polymerase subunit beta''3.9e-3998.8Show/hide
Query:  MEVLMAERADLVFHNNVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS
        MEVLMAERADLVFHN VIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS
Subjt:  MEVLMAERADLVFHNNVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS

Q9THV5 DNA-directed RNA polymerase subunit beta''3.3e-3896.39Show/hide
Query:  MEVLMAERADLVFHNNVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS
        MEVLMAERA+LVFHN VIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS
Subjt:  MEVLMAERADLVFHNNVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS

Arabidopsis top hitse value%identityAlignment
ATCG00170.1 DNA-directed RNA polymerase family protein1.7e-3795Show/hide
Query:  MAERADLVFHNNVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSF
        MAERA+LVFHN VIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQS+
Subjt:  MAERADLVFHNNVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSF

ATCG00180.1 DNA-directed RNA polymerase family protein4.5e-1476.19Show/hide
Query:  ERGILLDSPLWLRWRLDQRIIASREAPIEVHYESLGTHHEIY
        ++ I LDSPLWLRW+LDQR+IASRE PIEVHYES G +HEIY
Subjt:  ERGILLDSPLWLRWRLDQRIIASREAPIEVHYESLGTHHEIY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCATAGAAAGAGGGATCCTTTTAGATAGTCCTTTGTGGCTCCGATGGCGACTAGATCAACGCATTATTGCTTCAAGAGAAGCCCCTATCGAAGTTCACTAT
GAATCTTTGGGTACCCATCATGAGATTTATGGGACCACAGGTCCTGAATTTCTACGCGAATCAAGATCGAGAAAAGGAAGTTTTCTAATCATTGACTCAAACCTA
TTGTCGAACCCCACTCAGCGTAATATGGAGGTACTTATGGCGGAACGGGCCGATCTGGTCTTTCACAATAATGTGATAGATGGAACTGCCATTAAACGACTTATT
AGCAGATTAATAGATCACTTCGGAATGGCATATACATCACACATCCTGGATCAACTAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGA
ATTGATGATCTCTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTCAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATCATAGAAAGAGGGATCCTTTTAGATAGTCCTTTGTGGCTCCGATGGCGACTAGATCAACGCATTATTGCTTCAAGAGAAGCCCCTATCGAAGTTCACTAT
GAATCTTTGGGTACCCATCATGAGATTTATGGGACCACAGGTCCTGAATTTCTACGCGAATCAAGATCGAGAAAAGGAAGTTTTCTAATCATTGACTCAAACCTA
TTGTCGAACCCCACTCAGCGTAATATGGAGGTACTTATGGCGGAACGGGCCGATCTGGTCTTTCACAATAATGTGATAGATGGAACTGCCATTAAACGACTTATT
AGCAGATTAATAGATCACTTCGGAATGGCATATACATCACACATCCTGGATCAACTAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGA
ATTGATGATCTCTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTCAAGTGA
Protein sequenceShow/hide protein sequence
MIIERGILLDSPLWLRWRLDQRIIASREAPIEVHYESLGTHHEIYGTTGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNNVIDGTAIKRLI
SRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSFK