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Clc10G07325 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc10G07325
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
Genome locationClcChr10:10570521..10570763
RNA-Seq ExpressionClc10G07325
SyntenyClc10G07325
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7821986.1 putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein [Senna tora]2.5e-0438.96Show/hide
Query:  EAYAMLFGFQQVHEWGFSVFFIELDSQILVNAIHEGNLNGSPYGVIIEEIREWMTKSNSVGINFIPRGENGVAHKLA
        EA A+L G +Q      +   IE D+Q +VN +++GN++ S  G++IEEI E  +  +S+  N++ R  N VAH LA
Subjt:  EAYAMLFGFQQVHEWGFSVFFIELDSQILVNAIHEGNLNGSPYGVIIEEIREWMTKSNSVGINFIPRGENGVAHKLA

XP_024177931.1 uncharacterized protein LOC112183838 [Rosa chinensis]1.5e-0434.18Show/hide
Query:  TEAYAMLFGFQQVHEWGFSVFFIELDSQILVNAIHEGNLNGSPYGVIIEEIREWMTKSNSVGINFIPRGENGVAHKLAE
        TE  A++ G Q     GF    +E D Q+LV  +    L+ S  G ++ +++E +   +S  +NF+ R  N VAHKLA+
Subjt:  TEAYAMLFGFQQVHEWGFSVFFIELDSQILVNAIHEGNLNGSPYGVIIEEIREWMTKSNSVGINFIPRGENGVAHKLAE

XP_038704726.1 uncharacterized protein LOC120000672 [Tripterygium wilfordii]1.5e-0439.24Show/hide
Query:  MTEAYAMLFGFQQVHEWGFSVFFIELDSQILVNAIHEGNLNGSPYGVIIEEIREWMTKSNSVGINFIPRGENGVAHKLA
        + +AYA++ G Q     G S   IE DS +LVNAI       +P+G I+++IR  ++   SV + +  R  N VAHKLA
Subjt:  MTEAYAMLFGFQQVHEWGFSVFFIELDSQILVNAIHEGNLNGSPYGVIIEEIREWMTKSNSVGINFIPRGENGVAHKLA

XP_042941317.1 uncharacterized protein LOC122275981 [Carya illinoinensis]2.3e-0541.54Show/hide
Query:  EWGFSVFFIELDSQILVNAIHEGNLNGSPYGVIIEEIREWMTKSNSVGINFIPRGENGVAHKLAE
        E GFS   +E DSQ++VNA++      + YG IIE++R+ + +  + G+ F+ R  NG+AHKLA+
Subjt:  EWGFSVFFIELDSQILVNAIHEGNLNGSPYGVIIEEIREWMTKSNSVGINFIPRGENGVAHKLAE

XP_042958055.1 uncharacterized protein LOC122293570 [Carya illinoinensis]2.3e-0541.54Show/hide
Query:  EWGFSVFFIELDSQILVNAIHEGNLNGSPYGVIIEEIREWMTKSNSVGINFIPRGENGVAHKLAE
        E GFS   +E DSQ++VNA++      + YG IIE++R+ + +  + G+ F+ R  NG+AHKLA+
Subjt:  EWGFSVFFIELDSQILVNAIHEGNLNGSPYGVIIEEIREWMTKSNSVGINFIPRGENGVAHKLAE

TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAAGCATATGCTATGCTCTTTGGTTTTCAACAAGTGCATGAATGGGGCTTTTCTGTGTTTTTTATTGAATTAGATTCTCAAATCCTTGTTAATGCTATC
CATGAGGGTAATCTTAATGGATCTCCTTATGGAGTGATTATTGAGGAAATTAGAGAGTGGATGACAAAAAGTAATTCAGTTGGGATAAATTTTATCCCGAGGGGT
GAGAATGGTGTGGCTCACAAGTTAGCTGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAAGCATATGCTATGCTCTTTGGTTTTCAACAAGTGCATGAATGGGGCTTTTCTGTGTTTTTTATTGAATTAGATTCTCAAATCCTTGTTAATGCTATC
CATGAGGGTAATCTTAATGGATCTCCTTATGGAGTGATTATTGAGGAAATTAGAGAGTGGATGACAAAAAGTAATTCAGTTGGGATAAATTTTATCCCGAGGGGT
GAGAATGGTGTGGCTCACAAGTTAGCTGAGTGA
Protein sequenceShow/hide protein sequence
MTEAYAMLFGFQQVHEWGFSVFFIELDSQILVNAIHEGNLNGSPYGVIIEEIREWMTKSNSVGINFIPRGENGVAHKLAE