CuGenDBv2

Gene ID	Clc10G07492
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Cytochrome c biogenesis C
Genome location	ClcChr10:11560668..11561518
RNA-Seq Expression	Clc10G07492
Synteny	Clc10G07492
Gene Ontology terms	GO:0015886 - heme transport (biological process) GO:0017004 - cytochrome complex assembly (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0031966 - mitochondrial membrane (cellular component) GO:0015232 - heme transporter activity (molecular function) GO:0020037 - heme binding (molecular function)
InterPro domains	IPR002541 - Cytochrome c assembly protein IPR003557 - Cytochrome c-type biogenesis protein CcmC IPR045062 - Cytochrome c-type biogenesis protein CcsA/CcmC

Homology

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GenBank top hits

e value

%identity

Alignment

CAB4074751.1 unnamed protein product [Lactuca saligna]

7.7e-34

86.32

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Query:  AMAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAINTFLFLLTKSSLFLRSSETGIEMGAFFTSFTLVTGGFGEDLCEAPFGCGMLV
        AMAIHLSLRVAPLDLQQGGNS I YVHVPAA MSIL+YI TAINTFLFLLTK  LFLRS  TG EMGAF T FTLVTGGFGEDLC APFGCGMLV
Subjt:  AMAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAINTFLFLLTKSSLFLRSSETGIEMGAFFTSFTLVTGGFGEDLCEAPFGCGMLV

KAF7117260.1 hypothetical protein RHSIM_RhsimMtG0003100 [Rhododendron simsii]

3.7e-28

66.15

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Query:  MASKTNLPSLIDMV-HQSATLTNQLA-------------------------MAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAINTFLFLL
        MASKTNLPSLIDMV       TNQ+A                         MAIHLSLRVAPLDLQQGGNS I YVHVPAA MSIL+YI TAINTFLFLL
Subjt:  MASKTNLPSLIDMV-HQSATLTNQLA-------------------------MAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAINTFLFLL

Query:  TKSSLFLRSSETGIEMGAFFTSFTLVTGGF
        TK  LFLRSS TG EMGAF T FTLVTGGF
Subjt:  TKSSLFLRSSETGIEMGAFFTSFTLVTGGF

KAF7117263.1 hypothetical protein RHSIM_RhsimMtG0007900 [Rhododendron simsii]

3.7e-28

66.15

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Query:  MASKTNLPSLIDMV-HQSATLTNQLA-------------------------MAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAINTFLFLL
        MASKTNLPSLIDMV       TNQ+A                         MAIHLSLRVAPLDLQQGGNS I YVHVPAA MSIL+YI TAINTFLFLL
Subjt:  MASKTNLPSLIDMV-HQSATLTNQLA-------------------------MAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAINTFLFLL

Query:  TKSSLFLRSSETGIEMGAFFTSFTLVTGGF
        TK  LFLRSS TG EMGAF T FTLVTGGF
Subjt:  TKSSLFLRSSETGIEMGAFFTSFTLVTGGF

VDD65194.1 unnamed protein product [Brassica oleracea]

5.4e-27

85.37

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Query:  AMAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAINTFLFLLTKSSLFLRSSETGIEMGAFFTSFTLVTGGFGE
        AMAIHLSL VAPLDLQQGGNS ILYVHVPAA MSI++YI TAINTFLFLLTK  L+LRSS TGIEMGAFFT FTLVTGGFG+
Subjt:  AMAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAINTFLFLLTKSSLFLRSSETGIEMGAFFTSFTLVTGGFGE

YP_009477457.1 cytochrome c biogenesis C [Citrus sinensis]

5.4e-27

88.75

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Query:  AMAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAINTFLFLLTKSSLFLRSSETGIEMGAFFTSFTLVTGGF
        AMAIHLSLRVAPLD QQGGNS ILYVHVPAA MSIL+YI TAINTFLFLLTK  LFLRSS TGIEMGAFFT FTLVTGGF
Subjt:  AMAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAINTFLFLLTKSSLFLRSSETGIEMGAFFTSFTLVTGGF

TrEMBL top hits

e value

%identity

Alignment

A0A3P6H4X9 Cytochrom_C_asm domain-containing protein

2.6e-27

85.37

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Query:  AMAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAINTFLFLLTKSSLFLRSSETGIEMGAFFTSFTLVTGGFGE
        AMAIHLSL VAPLDLQQGGNS ILYVHVPAA MSI++YI TAINTFLFLLTK  L+LRSS TGIEMGAFFT FTLVTGGFG+
Subjt:  AMAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAINTFLFLLTKSSLFLRSSETGIEMGAFFTSFTLVTGGFGE

A0A6B9CYG4 Putative cytochrome c biosynthesis ccmC-like mitochondrial protein

2.6e-27

88.75

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Query:  AMAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAINTFLFLLTKSSLFLRSSETGIEMGAFFTSFTLVTGGF
        AMAIHLSLRVAPLD QQGGNS ILYVHVPAA MSIL+YI TAINTFLFLLTK  LFLRSS TGIEMGAFFT FTLVTGGF
Subjt:  AMAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAINTFLFLLTKSSLFLRSSETGIEMGAFFTSFTLVTGGF

A0A6S7KWW4 Uncharacterized protein

3.7e-34

86.32

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Query:  AMAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAINTFLFLLTKSSLFLRSSETGIEMGAFFTSFTLVTGGFGEDLCEAPFGCGMLV
        AMAIHLSLRVAPLDLQQGGNS I YVHVPAA MSIL+YI TAINTFLFLLTK  LFLRS  TG EMGAF T FTLVTGGFGEDLC APFGCGMLV
Subjt:  AMAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAINTFLFLLTKSSLFLRSSETGIEMGAFFTSFTLVTGGFGEDLCEAPFGCGMLV

A0A7U0IYG8 Cytochrome c biogenesis C

2.6e-27

88.75

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Query:  AMAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAINTFLFLLTKSSLFLRSSETGIEMGAFFTSFTLVTGGF
        AMAIHLSLRVAPLD QQGGNS ILYVHVPAA MSIL+YI TAINTFLFLLTK  LFLRSS TGIEMGAFFT FTLVTGGF
Subjt:  AMAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAINTFLFLLTKSSLFLRSSETGIEMGAFFTSFTLVTGGF

D5I3D1 Putative cytochrome c biosynthesis ccmC-like mitochondrial protein

2.6e-27

87.5

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Query:  AMAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAINTFLFLLTKSSLFLRSSETGIEMGAFFTSFTLVTGGF
        AMAI+LSL VAPLDLQQGGNS ILYVHVP AWMSIL+YI TAINTFLFLLTK  LFLRSS TGIEMGAFFT FTLVTGGF
Subjt:  AMAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAINTFLFLLTKSSLFLRSSETGIEMGAFFTSFTLVTGGF

SwissProt top hits

e value

%identity

Alignment

P38453 Putative cytochrome c biosynthesis ccmC-like mitochondrial protein

1.1e-19

66.25

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Query:  AMAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAINTFLFLLTKSSLFLRSSETGIEMGAFFTSFTLVTGGF
        AMAI+LS+ VAP D QQG N  I+YVHVPAAWMS+LIYI  AI++ LFLLTK  LF   S+T  ++GA FT FTLVTGGF
Subjt:  AMAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAINTFLFLLTKSSLFLRSSETGIEMGAFFTSFTLVTGGF

P92527 Putative cytochrome c biosynthesis ccmC-like mitochondrial protein

5.0e-28

82.5

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Query:  AMAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAINTFLFLLTKSSLFLRSSETGIEMGAFFTSFTLVTGGF
        AMAI+LSL VAPLD QQGGNS ILYVHVP AWMSI++YI TAINTFLFLLTK  L+L SS TGIEMGAFFT FTLVTGGF
Subjt:  AMAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAINTFLFLLTKSSLFLRSSETGIEMGAFFTSFTLVTGGF

Arabidopsis top hits

e value

%identity

Alignment

AT2G07681.1 Cytochrome C assembly protein

4.2e-30

86.25

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Query:  AMAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAINTFLFLLTKSSLFLRSSETGIEMGAFFTSFTLVTGGF
        AMAIHLSL VAPLDLQQGGNS ILYVHVPAA MSI++YI TAINTFLFLLTK  L+LRSS TGIEMGAFFT FTLVTGGF
Subjt:  AMAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAINTFLFLLTKSSLFLRSSETGIEMGAFFTSFTLVTGGF

AT2G07771.2 Cytochrome C assembly protein

4.2e-30

86.25

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Query:  AMAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAINTFLFLLTKSSLFLRSSETGIEMGAFFTSFTLVTGGF
        AMAIHLSL VAPLDLQQGGNS ILYVHVPAA MSI++YI TAINTFLFLLTK  L+LRSS TGIEMGAFFT FTLVTGGF
Subjt:  AMAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAINTFLFLLTKSSLFLRSSETGIEMGAFFTSFTLVTGGF

ATMG00900.1 cytochrome C biogenesis 256

4.2e-30

86.25

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Query:  AMAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAINTFLFLLTKSSLFLRSSETGIEMGAFFTSFTLVTGGF
        AMAIHLSL VAPLDLQQGGNS ILYVHVPAA MSI++YI TAINTFLFLLTK  L+LRSS TGIEMGAFFT FTLVTGGF
Subjt:  AMAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAINTFLFLLTKSSLFLRSSETGIEMGAFFTSFTLVTGGF

Sequences

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CDS sequence

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ATGGCAAGCAAGACAAACTTGCCAAGTTTAATTGATATGGTGCATCAGTCTGCCACTTTGACGAACCAACTAGCGATGGCTATTCATTTAAGTCTTCGGGTAGCACCACT
AGATCTTCAACAAGGTGGAAATTCTAGTATTCTGTATGTACATGTTCCTGCGGCTTGGATGAGTATTCTTATTTATATCATTACGGCTATAAACACTTTCTTGTTCCTAT
TAACAAAAAGTTCCCTTTTTCTTCGCTCTTCCGAAACCGGTATAGAAATGGGTGCTTTTTTTACATCGTTTACTTTAGTGACTGGGGGTTTCGGGGAAGACCTATGTGAG
GCACCTTTTGGGTGTGGGATGCTTGTTTAG

mRNA sequence

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Protein sequence

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MASKTNLPSLIDMVHQSATLTNQLAMAIHLSLRVAPLDLQQGGNSSILYVHVPAAWMSILIYIITAINTFLFLLTKSSLFLRSSETGIEMGAFFTSFTLVTGGFGEDLCE
APFGCGMLV

Clc10G07492 (gene) of Watermelon (cordophanus) v2 genome