; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc10G07504 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc10G07504
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase
Genome locationClcChr10:11923361..11927721
RNA-Seq ExpressionClc10G07504
SyntenyClc10G07504
Gene Ontology termsNA
InterPro domainsIPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032714.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.4e-3251.82Show/hide
Query:  LLKEFRSGATSLGVTNDGALLAPFQLRPKLVDEVVKKQFEDPVIKKIWEEMKAQQRADFELRSDGVLLKHGRVYVPKDTEVKQAILDEAHSSTNVMHPGS
        LL E R     +   + G+LLA FQ+R  LV E+VK+Q ED  ++K +E+ K     +FELR+DG ++K GR+ VP  +E+K AIL+EAHSS   MHPGS
Subjt:  LLKEFRSGATSLGVTNDGALLAPFQLRPKLVDEVVKKQFEDPVIKKIWEEMKAQQRADFELRSDGVLLKHGRVYVPKDTEVKQAILDEAHSSTNVMHPGS

Query:  TKMYRALQDFDWWAGMKREIAEFMTKCLICQRIKPAR
        TKMYR L+   WW+GMK+EIAE++ +CLICQ++KP R
Subjt:  TKMYRALQDFDWWAGMKREIAEFMTKCLICQRIKPAR

KAA0042192.1 polyprotein [Cucumis melo var. makuwa]3.2e-3248.92Show/hide
Query:  STLLKEFRSGATSLGVTNDGALLAPFQLRPKLVDEVVKKQFEDPVIKKIWEEMKAQQRADFELRSDGVLLKHGRVYVPKDTEVKQAILDEAHSSTNVMHP
        S LL+E + G  ++ V   G+L+A FQ+RP L+D +++ Q  D +++K+ EE++  Q  +F LR DG L+K+ R+ VP+D  +K  IL EAHSS   MHP
Subjt:  STLLKEFRSGATSLGVTNDGALLAPFQLRPKLVDEVVKKQFEDPVIKKIWEEMKAQQRADFELRSDGVLLKHGRVYVPKDTEVKQAILDEAHSSTNVMHP

Query:  GSTKMYRALQDFDWWAGMKREIAEFMTKCLICQRIKPAR
        GSTKMYR L+   WW GMKREI E++  CLICQ++KP R
Subjt:  GSTKMYRALQDFDWWAGMKREIAEFMTKCLICQRIKPAR

KAA0050493.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]7.1e-3251.09Show/hide
Query:  LLKEFRSGATSLGVTNDGALLAPFQLRPKLVDEVVKKQFEDPVIKKIWEEMKAQQRADFELRSDGVLLKHGRVYVPKDTEVKQAILDEAHSSTNVMHPGS
        LL E R     +   + G+LLA FQ+R  LV E+V++Q ED  ++K +E+ K     +FELR+DG ++K GR+ VP  +E+K AIL+EAHSS   MHPGS
Subjt:  LLKEFRSGATSLGVTNDGALLAPFQLRPKLVDEVVKKQFEDPVIKKIWEEMKAQQRADFELRSDGVLLKHGRVYVPKDTEVKQAILDEAHSSTNVMHPGS

Query:  TKMYRALQDFDWWAGMKREIAEFMTKCLICQRIKPAR
        TKMYR L+   WW+GMK+EIAE++ +CLICQ++KP R
Subjt:  TKMYRALQDFDWWAGMKREIAEFMTKCLICQRIKPAR

KAA0053246.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]7.1e-3251.09Show/hide
Query:  LLKEFRSGATSLGVTNDGALLAPFQLRPKLVDEVVKKQFEDPVIKKIWEEMKAQQRADFELRSDGVLLKHGRVYVPKDTEVKQAILDEAHSSTNVMHPGS
        LL E R     +   + G+LLA FQ+R  LV E+V++Q ED  ++K +E+ K     +FELR+DG ++K GR+ VP  +E+K AIL+EAHSS   MHPGS
Subjt:  LLKEFRSGATSLGVTNDGALLAPFQLRPKLVDEVVKKQFEDPVIKKIWEEMKAQQRADFELRSDGVLLKHGRVYVPKDTEVKQAILDEAHSSTNVMHPGS

Query:  TKMYRALQDFDWWAGMKREIAEFMTKCLICQRIKPAR
        TKMYR L+   WW+GMK+EIAE++ +CLICQ++KP R
Subjt:  TKMYRALQDFDWWAGMKREIAEFMTKCLICQRIKPAR

KAA0067054.1 putative Retrotransposon protein [Cucumis melo var. makuwa]4.9e-3349.64Show/hide
Query:  STLLKEFRSGATSLGVTNDGALLAPFQLRPKLVDEVVKKQFEDPVIKKIWEEMKAQQRADFELRSDGVLLKHGRVYVPKDTEVKQAILDEAHSSTNVMHP
        S+LL+E + G  +  V   G+L+A FQ+RP L+D ++K Q +D +++K+ EE++  QR ++ LR D  L+K+ R+ VP D  +K  IL+EAHSS   MHP
Subjt:  STLLKEFRSGATSLGVTNDGALLAPFQLRPKLVDEVVKKQFEDPVIKKIWEEMKAQQRADFELRSDGVLLKHGRVYVPKDTEVKQAILDEAHSSTNVMHP

Query:  GSTKMYRALQDFDWWAGMKREIAEFMTKCLICQRIKP
        GSTKMYR L+   WW GMKREIA+++ KCLICQ++KP
Subjt:  GSTKMYRALQDFDWWAGMKREIAEFMTKCLICQRIKP

TrEMBL top hitse value%identityAlignment
A0A5A7SNE6 DNA/RNA polymerases superfamily protein1.2e-3251.82Show/hide
Query:  LLKEFRSGATSLGVTNDGALLAPFQLRPKLVDEVVKKQFEDPVIKKIWEEMKAQQRADFELRSDGVLLKHGRVYVPKDTEVKQAILDEAHSSTNVMHPGS
        LL E R     +   + G+LLA FQ+R  LV E+VK+Q ED  ++K +E+ K     +FELR+DG ++K GR+ VP  +E+K AIL+EAHSS   MHPGS
Subjt:  LLKEFRSGATSLGVTNDGALLAPFQLRPKLVDEVVKKQFEDPVIKKIWEEMKAQQRADFELRSDGVLLKHGRVYVPKDTEVKQAILDEAHSSTNVMHPGS

Query:  TKMYRALQDFDWWAGMKREIAEFMTKCLICQRIKPAR
        TKMYR L+   WW+GMK+EIAE++ +CLICQ++KP R
Subjt:  TKMYRALQDFDWWAGMKREIAEFMTKCLICQRIKPAR

A0A5A7U2V7 Reverse transcriptase3.4e-3251.09Show/hide
Query:  LLKEFRSGATSLGVTNDGALLAPFQLRPKLVDEVVKKQFEDPVIKKIWEEMKAQQRADFELRSDGVLLKHGRVYVPKDTEVKQAILDEAHSSTNVMHPGS
        LL E R     +   + G+LLA FQ+R  LV E+V++Q ED  ++K +E+ K     +FELR+DG ++K GR+ VP  +E+K AIL+EAHSS   MHPGS
Subjt:  LLKEFRSGATSLGVTNDGALLAPFQLRPKLVDEVVKKQFEDPVIKKIWEEMKAQQRADFELRSDGVLLKHGRVYVPKDTEVKQAILDEAHSSTNVMHPGS

Query:  TKMYRALQDFDWWAGMKREIAEFMTKCLICQRIKPAR
        TKMYR L+   WW+GMK+EIAE++ +CLICQ++KP R
Subjt:  TKMYRALQDFDWWAGMKREIAEFMTKCLICQRIKPAR

A0A5A7VI68 Putative Retrotransposon protein2.4e-3349.64Show/hide
Query:  STLLKEFRSGATSLGVTNDGALLAPFQLRPKLVDEVVKKQFEDPVIKKIWEEMKAQQRADFELRSDGVLLKHGRVYVPKDTEVKQAILDEAHSSTNVMHP
        S+LL+E + G  +  V   G+L+A FQ+RP L+D ++K Q +D +++K+ EE++  QR ++ LR D  L+K+ R+ VP D  +K  IL+EAHSS   MHP
Subjt:  STLLKEFRSGATSLGVTNDGALLAPFQLRPKLVDEVVKKQFEDPVIKKIWEEMKAQQRADFELRSDGVLLKHGRVYVPKDTEVKQAILDEAHSSTNVMHP

Query:  GSTKMYRALQDFDWWAGMKREIAEFMTKCLICQRIKP
        GSTKMYR L+   WW GMKREIA+++ KCLICQ++KP
Subjt:  GSTKMYRALQDFDWWAGMKREIAEFMTKCLICQRIKP

A0A5D3BS67 Reverse transcriptase3.4e-3251.09Show/hide
Query:  LLKEFRSGATSLGVTNDGALLAPFQLRPKLVDEVVKKQFEDPVIKKIWEEMKAQQRADFELRSDGVLLKHGRVYVPKDTEVKQAILDEAHSSTNVMHPGS
        LL E R     +   + G+LLA FQ+R  LV E+V++Q ED  ++K +E+ K     +FELR+DG ++K GR+ VP  +E+K AIL+EAHSS   MHPGS
Subjt:  LLKEFRSGATSLGVTNDGALLAPFQLRPKLVDEVVKKQFEDPVIKKIWEEMKAQQRADFELRSDGVLLKHGRVYVPKDTEVKQAILDEAHSSTNVMHPGS

Query:  TKMYRALQDFDWWAGMKREIAEFMTKCLICQRIKPAR
        TKMYR L+   WW+GMK+EIAE++ +CLICQ++KP R
Subjt:  TKMYRALQDFDWWAGMKREIAEFMTKCLICQRIKPAR

A0A5D3DTE8 Polyprotein1.5e-3248.92Show/hide
Query:  STLLKEFRSGATSLGVTNDGALLAPFQLRPKLVDEVVKKQFEDPVIKKIWEEMKAQQRADFELRSDGVLLKHGRVYVPKDTEVKQAILDEAHSSTNVMHP
        S LL+E + G  ++ V   G+L+A FQ+RP L+D +++ Q  D +++K+ EE++  Q  +F LR DG L+K+ R+ VP+D  +K  IL EAHSS   MHP
Subjt:  STLLKEFRSGATSLGVTNDGALLAPFQLRPKLVDEVVKKQFEDPVIKKIWEEMKAQQRADFELRSDGVLLKHGRVYVPKDTEVKQAILDEAHSSTNVMHP

Query:  GSTKMYRALQDFDWWAGMKREIAEFMTKCLICQRIKPAR
        GSTKMYR L+   WW GMKREI E++  CLICQ++KP R
Subjt:  GSTKMYRALQDFDWWAGMKREIAEFMTKCLICQRIKPAR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGTGAGTGAGAGATTGGGAGTTGGTGCTAGCGAGAGCTGTAGAGTTGTGTCGCTGGGTCGTGGATCTGACAATACTGAGGAAGTGAGCGAAAGGGAAGGA
CTAAAAAGAGCTTTATCACTAGATCGTGGGTCTGACGGTACTAAGGAAGTGAGCGGGAGGTTGGGACCAGCAAGAGTTATGTCACTGGGTCGTGGGTCTGTAGGT
ACCGAGGAAGCGAGTGAGAGGAGGGGACTAGCGAGAGCTGTGTCGATAGATCCTGGGTCTATCAATACAGAAGGAGTGAGCGAGAGTATGGGAGTTGGTGCTAGT
GAGAGGCGGAAAGTTGGGCTAGTTTGCAATGTGGGCTTGTTGCGGAACCTATCTTGGTCTGTCCCAGTGAATCAAATGGAGTCCATAAGCCGCTTGTCTGGGTCT
CGCCTATTTAGGGTCAGTTCATGTCATCATGAGAGCCTATCAACATGTAAGTGGTTCTCCCTATTATGTGCTCTGAAATCTGATGAGTTGTTATATACTCTGCCT
AAGATGGTGGAAGATGTGGTGGTAGTTGAACCATTTGAGGAGGTGCTGAACGTGGGGTGTTGTCTATGGGAGAACTCTTTGGTTGGTCAATTTATGGATGCTACC
TTGCCTTATATTGTCATTCAATGCTTCGTTACCCGTATATGGGGTAAGAGTCAAGACCACTTGCATCGAACCTCTAATGATGAAAATCGGGTTGAACTGGCTGAA
AACCAGCTGAACTGGAGGGAAATAGCTAAACCGGACCGCATCTTCTTTAACTCACATGTTTCTGGAAAAAGAAATCAACAACGTCGCGACGCTCCACAGCACAAG
GTGCTGCTGCTCCTCGATACTGCTTGCCTTGGGTACAAATGGTCAAGGGTCGGTGTGACGGGTTCTAGGATGAGCATTGAGACCTTGGGTACAAATGGTCAAGGG
TCAATGATCGATGTAGAGCTCGGGGCCTTGGGTATAAATGGTCAAAGACCGTGCATAAGAACCAAGCCACTGCCGCCCGTGCACGCTTGCCCTCGGCATTGCAGG
TCAGCTGCCGTTCCGCGAGTCCGTGTGCCTGCTGCTGCAATCGCGAGCCGTCTTCCACCCTGTTTCGCGACCCGCCGTCGACAGCCCCTCGCCGGATCTATGGGT
CTTGGTAGATCCTTGAGAAGGTCAAGATTGAATCAGGAATTGGGAATTTTGGACATTTTTAGGCATTCACAGGATAACAACTTCACCATAGGCCCAGTAGCGTAC
CTTTGGGTCGCTACCTATGCTTATGCCTATGTCGGGTGGTACGAGTTTTTTCAATATGGTGAAAGTACTTTGCTTAAAGAGTTCAGAAGTGGTGCTACTAGTTTA
GGAGTAACTAATGATGGAGCGTTGTTAGCACCTTTTCAATTGAGGCCTAAGTTAGTTGATGAGGTAGTAAAGAAACAGTTCGAAGATCCTGTGATTAAAAAGATA
TGGGAAGAAATGAAGGCTCAGCAAAGAGCAGATTTCGAGTTAAGATCTGATGGTGTACTGTTGAAGCATGGTAGAGTGTATGTACCAAAGGATACTGAAGTCAAG
CAGGCGATTCTTGATGAGGCACATAGCTCAACTAATGTTATGCATCCTGGCAGTACCAAGATGTATAGGGCGTTACAAGATTTTGATTGGTGGGCAGGTATGAAG
AGGGAGATAGCTGAGTTTATGACGAAATGTTTAATTTGTCAGCGAATTAAGCCTGCACGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGTGAGTGAGAGATTGGGAGTTGGTGCTAGCGAGAGCTGTAGAGTTGTGTCGCTGGGTCGTGGATCTGACAATACTGAGGAAGTGAGCGAAAGGGAAGGA
CTAAAAAGAGCTTTATCACTAGATCGTGGGTCTGACGGTACTAAGGAAGTGAGCGGGAGGTTGGGACCAGCAAGAGTTATGTCACTGGGTCGTGGGTCTGTAGGT
ACCGAGGAAGCGAGTGAGAGGAGGGGACTAGCGAGAGCTGTGTCGATAGATCCTGGGTCTATCAATACAGAAGGAGTGAGCGAGAGTATGGGAGTTGGTGCTAGT
GAGAGGCGGAAAGTTGGGCTAGTTTGCAATGTGGGCTTGTTGCGGAACCTATCTTGGTCTGTCCCAGTGAATCAAATGGAGTCCATAAGCCGCTTGTCTGGGTCT
CGCCTATTTAGGGTCAGTTCATGTCATCATGAGAGCCTATCAACATGTAAGTGGTTCTCCCTATTATGTGCTCTGAAATCTGATGAGTTGTTATATACTCTGCCT
AAGATGGTGGAAGATGTGGTGGTAGTTGAACCATTTGAGGAGGTGCTGAACGTGGGGTGTTGTCTATGGGAGAACTCTTTGGTTGGTCAATTTATGGATGCTACC
TTGCCTTATATTGTCATTCAATGCTTCGTTACCCGTATATGGGGTAAGAGTCAAGACCACTTGCATCGAACCTCTAATGATGAAAATCGGGTTGAACTGGCTGAA
AACCAGCTGAACTGGAGGGAAATAGCTAAACCGGACCGCATCTTCTTTAACTCACATGTTTCTGGAAAAAGAAATCAACAACGTCGCGACGCTCCACAGCACAAG
GTGCTGCTGCTCCTCGATACTGCTTGCCTTGGGTACAAATGGTCAAGGGTCGGTGTGACGGGTTCTAGGATGAGCATTGAGACCTTGGGTACAAATGGTCAAGGG
TCAATGATCGATGTAGAGCTCGGGGCCTTGGGTATAAATGGTCAAAGACCGTGCATAAGAACCAAGCCACTGCCGCCCGTGCACGCTTGCCCTCGGCATTGCAGG
TCAGCTGCCGTTCCGCGAGTCCGTGTGCCTGCTGCTGCAATCGCGAGCCGTCTTCCACCCTGTTTCGCGACCCGCCGTCGACAGCCCCTCGCCGGATCTATGGGT
CTTGGTAGATCCTTGAGAAGGTCAAGATTGAATCAGGAATTGGGAATTTTGGACATTTTTAGGCATTCACAGGATAACAACTTCACCATAGGCCCAGTAGCGTAC
CTTTGGGTCGCTACCTATGCTTATGCCTATGTCGGGTGGTACGAGTTTTTTCAATATGGTGAAAGTACTTTGCTTAAAGAGTTCAGAAGTGGTGCTACTAGTTTA
GGAGTAACTAATGATGGAGCGTTGTTAGCACCTTTTCAATTGAGGCCTAAGTTAGTTGATGAGGTAGTAAAGAAACAGTTCGAAGATCCTGTGATTAAAAAGATA
TGGGAAGAAATGAAGGCTCAGCAAAGAGCAGATTTCGAGTTAAGATCTGATGGTGTACTGTTGAAGCATGGTAGAGTGTATGTACCAAAGGATACTGAAGTCAAG
CAGGCGATTCTTGATGAGGCACATAGCTCAACTAATGTTATGCATCCTGGCAGTACCAAGATGTATAGGGCGTTACAAGATTTTGATTGGTGGGCAGGTATGAAG
AGGGAGATAGCTGAGTTTATGACGAAATGTTTAATTTGTCAGCGAATTAAGCCTGCACGTTAG
Protein sequenceShow/hide protein sequence
MEVSERLGVGASESCRVVSLGRGSDNTEEVSEREGLKRALSLDRGSDGTKEVSGRLGPARVMSLGRGSVGTEEASERRGLARAVSIDPGSINTEGVSESMGVGAS
ERRKVGLVCNVGLLRNLSWSVPVNQMESISRLSGSRLFRVSSCHHESLSTCKWFSLLCALKSDELLYTLPKMVEDVVVVEPFEEVLNVGCCLWENSLVGQFMDAT
LPYIVIQCFVTRIWGKSQDHLHRTSNDENRVELAENQLNWREIAKPDRIFFNSHVSGKRNQQRRDAPQHKVLLLLDTACLGYKWSRVGVTGSRMSIETLGTNGQG
SMIDVELGALGINGQRPCIRTKPLPPVHACPRHCRSAAVPRVRVPAAAIASRLPPCFATRRRQPLAGSMGLGRSLRRSRLNQELGILDIFRHSQDNNFTIGPVAY
LWVATYAYAYVGWYEFFQYGESTLLKEFRSGATSLGVTNDGALLAPFQLRPKLVDEVVKKQFEDPVIKKIWEEMKAQQRADFELRSDGVLLKHGRVYVPKDTEVK
QAILDEAHSSTNVMHPGSTKMYRALQDFDWWAGMKREIAEFMTKCLICQRIKPAR