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Clc10G07506 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc10G07506
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionS locus-related glycoprotein 1 binding pollen coat
Genome locationClcChr10:11935630..11938442
RNA-Seq ExpressionClc10G07506
SyntenyClc10G07506
Gene Ontology termsGO:0044419 - interspecies interaction between organisms (biological process)
InterPro domainsIPR010851 - Defensin-like protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBH07492.1 hypothetical protein Prudu_019451 [Prunus dulcis]8.0e-1160.34Show/hide
Query:  VPQGASAAQRCQDILYNNGCTLDGCGKKCWEKHHSISHQCTPTNPAQTIYACYCFFDC
        VPQ A A +RC + LY +GCTL  CGKKCWEKHH   ++C   N AQT YACYC F+C
Subjt:  VPQGASAAQRCQDILYNNGCTLDGCGKKCWEKHHSISHQCTPTNPAQTIYACYCFFDC

KAA0042348.1 S locus-related glycoprotein 1 binding pollen coat [Cucumis melo var. makuwa]4.1e-2365.48Show/hide
Query:  MAKLVPSSSIIFIALIFAVSLILVPQGASAAQRCQDILYNNGCTLDGCGKKCWEKHHSISHQCTPTNPAQTIYACYCFFDCARS
        M KL  SS I+ IAL  AV++ILVPQGA A +RCQD LY+ GCTL  CG+KCWEKHH  SHQC PT+P QTIYACYCF++C ++
Subjt:  MAKLVPSSSIIFIALIFAVSLILVPQGASAAQRCQDILYNNGCTLDGCGKKCWEKHHSISHQCTPTNPAQTIYACYCFFDCARS

KAE8649772.1 hypothetical protein Csa_012405, partial [Cucumis sativus]1.8e-2371.64Show/hide
Query:  SLILVPQGASAAQRCQDILYNNGCTLDGCGKKCWEKHHSISHQCTPTNPAQTIYACYCFFDCARSRS
        +L+L  Q  SAAQRCQD+LYN GC L+ CGKKCWEKHH+ISHQC PTNP+QTIYACYCFFDC   ++
Subjt:  SLILVPQGASAAQRCQDILYNNGCTLDGCGKKCWEKHHSISHQCTPTNPAQTIYACYCFFDCARSRS

KGN64987.1 hypothetical protein Csa_022748 [Cucumis sativus]2.9e-2167.9Show/hide
Query:  MAKLVPSSSIIFIALIFAVSLILVPQGASAAQRCQDILYNNGCTLDGCGKKCWEKHHSISHQCTPTNPAQTIYACYCFFDC
        M KL  SS I+ I LI AV++I +PQGA AA RCQDILYN+GCTL  CG+KCWEKHH  S QC PT+P QTIYACYCF+ C
Subjt:  MAKLVPSSSIIFIALIFAVSLILVPQGASAAQRCQDILYNNGCTLDGCGKKCWEKHHSISHQCTPTNPAQTIYACYCFFDC

OMO95288.1 S locus-related glycoprotein 1 binding pollen coat [Corchorus olitorius]3.6e-1148.24Show/hide
Query:  MAKLVPSSSIIFIALIFAVSLILVPQG--ASAAQRCQDILYNNGCTLDGCGKKCWEKHHSISHQCTPTNPAQTIYACYCFFDCAR
        MAK   +  ++ I L+F+V  + +P    A A +RCQ ILY  GCTL  C KKC++K  SI  QC PTN AQTIY C C ++C R
Subjt:  MAKLVPSSSIIFIALIFAVSLILVPQG--ASAAQRCQDILYNNGCTLDGCGKKCWEKHHSISHQCTPTNPAQTIYACYCFFDCAR

TrEMBL top hitse value%identityAlignment
A0A0A0KYP7 Uncharacterized protein4.6e-1252Show/hide
Query:  SSSIIFIALIFAVSLILVPQGASAAQRCQDILYNNGCTLDGCGKKCWEKHHSISHQCTPTNPAQTIYACYCFFDC
        S  +  I +IFAVS+ILVPQG SA  +CQD LY  GC    CG+KC + HH  + +C  T+P  T YACYCF++C
Subjt:  SSSIIFIALIFAVSLILVPQGASAAQRCQDILYNNGCTLDGCGKKCWEKHHSISHQCTPTNPAQTIYACYCFFDC

A0A0A0L2R3 Uncharacterized protein2.3e-2771.25Show/hide
Query:  SSSIIFIALIFAVSLILVPQGASAAQRCQDILYNNGCTLDGCGKKCWEKHHSISHQCTPTNPAQTIYACYCFFDCARSRS
        SS II  ALIFAV+L+L  Q  SAAQRCQD+LYN GC L+ CGKKCWEKHH++SHQC PTNP+QTIYACYCFFDC   ++
Subjt:  SSSIIFIALIFAVSLILVPQGASAAQRCQDILYNNGCTLDGCGKKCWEKHHSISHQCTPTNPAQTIYACYCFFDCARSRS

A0A0A0LVZ5 Uncharacterized protein1.4e-2167.9Show/hide
Query:  MAKLVPSSSIIFIALIFAVSLILVPQGASAAQRCQDILYNNGCTLDGCGKKCWEKHHSISHQCTPTNPAQTIYACYCFFDC
        M KL  SS I+ I LI AV++I +PQGA AA RCQDILYN+GCTL  CG+KCWEKHH  S QC PT+P QTIYACYCF+ C
Subjt:  MAKLVPSSSIIFIALIFAVSLILVPQGASAAQRCQDILYNNGCTLDGCGKKCWEKHHSISHQCTPTNPAQTIYACYCFFDC

A0A1R3JKF5 S locus-related glycoprotein 1 binding pollen coat1.7e-1148.24Show/hide
Query:  MAKLVPSSSIIFIALIFAVSLILVPQG--ASAAQRCQDILYNNGCTLDGCGKKCWEKHHSISHQCTPTNPAQTIYACYCFFDCAR
        MAK   +  ++ I L+F+V  + +P    A A +RCQ ILY  GCTL  C KKC++K  SI  QC PTN AQTIY C C ++C R
Subjt:  MAKLVPSSSIIFIALIFAVSLILVPQG--ASAAQRCQDILYNNGCTLDGCGKKCWEKHHSISHQCTPTNPAQTIYACYCFFDCAR

A0A5A7THQ7 S locus-related glycoprotein 1 binding pollen coat2.0e-2365.48Show/hide
Query:  MAKLVPSSSIIFIALIFAVSLILVPQGASAAQRCQDILYNNGCTLDGCGKKCWEKHHSISHQCTPTNPAQTIYACYCFFDCARS
        M KL  SS I+ IAL  AV++ILVPQGA A +RCQD LY+ GCTL  CG+KCWEKHH  SHQC PT+P QTIYACYCF++C ++
Subjt:  MAKLVPSSSIIFIALIFAVSLILVPQGASAAQRCQDILYNNGCTLDGCGKKCWEKHHSISHQCTPTNPAQTIYACYCFFDCARS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAAGCTAGTTCCTTCTTCCAGTATTATTTTCATTGCTCTTATTTTTGCAGTTTCATTGATCTTGGTGCCTCAAGGAGCCTCAGCTGCCCAAAGATGTCAA
GATATATTGTATAACAATGGCTGCACTCTTGATGGTTGCGGAAAGAAATGTTGGGAGAAGCACCATAGTATTTCACATCAATGCACTCCAACTAATCCTGCTCAA
ACCATCTATGCTTGTTATTGTTTTTTTGATTGCGCTCGGAGTCGATCCATGCCTCCAGATCTGTCACGAAATAAGCGGAGGATGAGTAGTCAAGTGGTGTCTGAG
GGTATTGCTGTTGCAATGGAGGTAGTTAGAGATTGCGTTCTTTGGCAACTACAGAATACTCACCTGGTGGCGGCAGAAGCTAGGAAGACGTTGATGGATGCCTTA
GAACCAACTCCGCTTTGGTCTAATGAGGATGATTTGACTGAATCGGTTGTTTTGGGTCATAAGCGGGTAGGCGGATGGGCGACGTTGTTGGAGGATGTCCATGTA
GCTTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGAAGCTAGTTCCTTCTTCCAGTATTATTTTCATTGCTCTTATTTTTGCAGTTTCATTGATCTTGGTGCCTCAAGGAGCCTCAGCTGCCCAAAGATGTCAA
GATATATTGTATAACAATGGCTGCACTCTTGATGGTTGCGGAAAGAAATGTTGGGAGAAGCACCATAGTATTTCACATCAATGCACTCCAACTAATCCTGCTCAA
ACCATCTATGCTTGTTATTGTTTTTTTGATTGCGCTCGGAGTCGATCCATGCCTCCAGATCTGTCACGAAATAAGCGGAGGATGAGTAGTCAAGTGGTGTCTGAG
GGTATTGCTGTTGCAATGGAGGTAGTTAGAGATTGCGTTCTTTGGCAACTACAGAATACTCACCTGGTGGCGGCAGAAGCTAGGAAGACGTTGATGGATGCCTTA
GAACCAACTCCGCTTTGGTCTAATGAGGATGATTTGACTGAATCGGTTGTTTTGGGTCATAAGCGGGTAGGCGGATGGGCGACGTTGTTGGAGGATGTCCATGTA
GCTTGGTGA
Protein sequenceShow/hide protein sequence
MAKLVPSSSIIFIALIFAVSLILVPQGASAAQRCQDILYNNGCTLDGCGKKCWEKHHSISHQCTPTNPAQTIYACYCFFDCARSRSMPPDLSRNKRRMSSQVVSE
GIAVAMEVVRDCVLWQLQNTHLVAAEARKTLMDALEPTPLWSNEDDLTESVVLGHKRVGGWATLLEDVHVAW