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Clc10G07957 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc10G07957
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionClassical arabinogalactan protein 9
Genome locationClcChr10:17521624..17522142
RNA-Seq ExpressionClc10G07957
SyntenyClc10G07957
Gene Ontology termsNA
InterPro domainsIPR044959 - Classical arabinogalactan protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053440.1 classical arabinogalactan protein 9 [Cucumis melo var. makuwa]2.0e-5185.47Show/hide
Query:  MKMGFQFVLVLALFATSCMAQAPGSAPAQPPTTPAVPPPSTPPPAASPPPATPPPATPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPAS
        MKMGFQFV+ LALFATSCMAQAPG+APAQPP+TPAVPPPSTPPPAASPPPATPPPATPPPATPP ATPPPA    +TPP  S+PPS PPAS PTSP P+S
Subjt:  MKMGFQFVLVLALFATSCMAQAPGSAPAQPPTTPAVPPPSTPPPAASPPPATPPPATPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPAS

Query:  PTSSPSAPPKEGPTSSPTSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA
        P+S P+APPKEGP S PTSSPPSPPPEGNVPT SPGPSPPPPPPEGNGAASVSRGMMVGGAVAGA LAM+FA
Subjt:  PTSSPSAPPKEGPTSSPTSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA

KAG6600667.1 hypothetical protein SDJN03_05900, partial [Cucurbita argyrosperma subsp. sororia]1.2e-3875.27Show/hide
Query:  MKMGFQFVLVLALFATSCMAQAPGSAPAQPPTTPAVPPPSTPPPAASPPPATPPPA-TPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPA
        MKMG QF++VLA  ATS MAQAPG+APAQPPTTPAVPPPSTPPPAASPPPATPPPA TPPPATPP ATPPPATPP ATPP A TPPS PPA+ PTSPA  
Subjt:  MKMGFQFVLVLALFATSCMAQAPGSAPAQPPTTPAVPPPSTPPPAASPPPATPPPA-TPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPA

Query:  SPTSSPSAPPKEGPTSSP---------TSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA
         PTSSP+ PPKEGP SSP         T+SPPSPP EGNVP+G+PGP+  PPPPE NGA S+SR  MVG AV+G LLAMVFA
Subjt:  SPTSSPSAPPKEGPTSSP---------TSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA

TYK14854.1 vegetative cell wall protein gp1 [Cucumis melo var. makuwa]2.0e-5185.47Show/hide
Query:  MKMGFQFVLVLALFATSCMAQAPGSAPAQPPTTPAVPPPSTPPPAASPPPATPPPATPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPAS
        MKMGFQFV+ LALFATSCMAQAPG+APAQPP+TPAVPPPSTPPPAASPPPATPPPATPPPATPP ATPPPA    +TPP  S+PPS PPAS PTSP P+S
Subjt:  MKMGFQFVLVLALFATSCMAQAPGSAPAQPPTTPAVPPPSTPPPAASPPPATPPPATPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPAS

Query:  PTSSPSAPPKEGPTSSPTSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA
        P+S P+APPKEGP S PTSSPPSPPPEGNVPT SPGPSPPPPPPEGNGAASVSRGMMVGGAVAGA LAM+FA
Subjt:  PTSSPSAPPKEGPTSSPTSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA

XP_008455676.1 PREDICTED: vegetative cell wall protein gp1 [Cucumis melo]2.9e-5085.29Show/hide
Query:  MGFQFVLVLALFATSCMAQAPGSAPAQPPTTPAVPPPSTPPPAASPPPATPPPATPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPASPT
        MGFQFV+ LALFATSCMAQAPG+APAQPP+TPAVPPPSTPPPAASPPPATPPPATPPPATPP ATPPPA    +TPP  S+PPS PPAS PTSP P+SP+
Subjt:  MGFQFVLVLALFATSCMAQAPGSAPAQPPTTPAVPPPSTPPPAASPPPATPPPATPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPASPT

Query:  SSPSAPPKEGPTSSPTSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA
        S P+APPKEGP S PTSSPPSPPPEGNVPT SPGPSPPPPPPEGNGAASVSRGMMVGGAVAGA LAM+FA
Subjt:  SSPSAPPKEGPTSSPTSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA

XP_023545089.1 classical arabinogalactan protein 4-like [Cucurbita pepo subsp. pepo]5.7e-3875.71Show/hide
Query:  MGFQFVLVLALFATSCMAQAPGSAPAQPPTTPAVPPPSTPPPAASPPPATPPP-ATPPPATPPVATPPPATPPVATPP---PASTPPSSPPASAPTSPAP
        MG QF+++LA  ATS MAQAPG+APAQPPTTPAVPPPSTPPPAASPPPATPPP ATPPPATPP ATPPPATPP ATPP   P S+PPS PPA+ PTSPA 
Subjt:  MGFQFVLVLALFATSCMAQAPGSAPAQPPTTPAVPPPSTPPPAASPPPATPPP-ATPPPATPPVATPPPATPPVATPP---PASTPPSSPPASAPTSPAP

Query:  ASPTSSPSAPPKEGPTSSP---TSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA
          PTSSP+ PPKEGP SSP   T+SPPSPP EGNVP+G+PGP+  PPPPE NGA S+SR  MVG AV+G LLAMVFA
Subjt:  ASPTSSPSAPPKEGPTSSP---TSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA

TrEMBL top hitse value%identityAlignment
A0A0A0L0L1 Uncharacterized protein7.5e-5286.05Show/hide
Query:  MKMGFQFVLVLALFATSCMAQAPGSAPAQPPTTPAVPPPSTPPPAASPPPATPPPATPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPAS
        MKMGFQFV+ LALFATSCMAQAPG+APAQPP+TPAVPPPSTPPPAASPPPATPPPATPPPATPP ATPPPA    +TPP  S+PPS PPAS PTSP P+S
Subjt:  MKMGFQFVLVLALFATSCMAQAPGSAPAQPPTTPAVPPPSTPPPAASPPPATPPPATPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPAS

Query:  PTSSPSAPPKEGPTSSPTSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA
        P+S P+APPKEGP S PTSSPPSPPPEGNVPT SPGPSPPPPPPEGNGAASVSRGMMVGGAVAGA LAMVFA
Subjt:  PTSSPSAPPKEGPTSSPTSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA

A0A1S3C1K1 vegetative cell wall protein gp11.4e-5085.29Show/hide
Query:  MGFQFVLVLALFATSCMAQAPGSAPAQPPTTPAVPPPSTPPPAASPPPATPPPATPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPASPT
        MGFQFV+ LALFATSCMAQAPG+APAQPP+TPAVPPPSTPPPAASPPPATPPPATPPPATPP ATPPPA    +TPP  S+PPS PPAS PTSP P+SP+
Subjt:  MGFQFVLVLALFATSCMAQAPGSAPAQPPTTPAVPPPSTPPPAASPPPATPPPATPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPASPT

Query:  SSPSAPPKEGPTSSPTSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA
        S P+APPKEGP S PTSSPPSPPPEGNVPT SPGPSPPPPPPEGNGAASVSRGMMVGGAVAGA LAM+FA
Subjt:  SSPSAPPKEGPTSSPTSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA

A0A5A7UE17 Classical arabinogalactan protein 99.8e-5285.47Show/hide
Query:  MKMGFQFVLVLALFATSCMAQAPGSAPAQPPTTPAVPPPSTPPPAASPPPATPPPATPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPAS
        MKMGFQFV+ LALFATSCMAQAPG+APAQPP+TPAVPPPSTPPPAASPPPATPPPATPPPATPP ATPPPA    +TPP  S+PPS PPAS PTSP P+S
Subjt:  MKMGFQFVLVLALFATSCMAQAPGSAPAQPPTTPAVPPPSTPPPAASPPPATPPPATPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPAS

Query:  PTSSPSAPPKEGPTSSPTSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA
        P+S P+APPKEGP S PTSSPPSPPPEGNVPT SPGPSPPPPPPEGNGAASVSRGMMVGGAVAGA LAM+FA
Subjt:  PTSSPSAPPKEGPTSSPTSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA

A0A5D3CV77 Vegetative cell wall protein gp19.8e-5285.47Show/hide
Query:  MKMGFQFVLVLALFATSCMAQAPGSAPAQPPTTPAVPPPSTPPPAASPPPATPPPATPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPAS
        MKMGFQFV+ LALFATSCMAQAPG+APAQPP+TPAVPPPSTPPPAASPPPATPPPATPPPATPP ATPPPA    +TPP  S+PPS PPAS PTSP P+S
Subjt:  MKMGFQFVLVLALFATSCMAQAPGSAPAQPPTTPAVPPPSTPPPAASPPPATPPPATPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPAS

Query:  PTSSPSAPPKEGPTSSPTSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA
        P+S P+APPKEGP S PTSSPPSPPPEGNVPT SPGPSPPPPPPEGNGAASVSRGMMVGGAVAGA LAM+FA
Subjt:  PTSSPSAPPKEGPTSSPTSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA

A0A6J1J5L5 classical arabinogalactan protein 4-like1.7e-3573.14Show/hide
Query:  MKMGFQFVLVLALFATSCMAQAPGSAPAQPPTTPAVPPPSTPPPAASPPPATPPPATPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPAS
        MKMGFQFV+VLALFATS MAQAPG+APAQPPTTPAVPPPSTPPP  +       PATPPPA    ATPPPATPP A  PP S PPSSP    PT P PAS
Subjt:  MKMGFQFVLVLALFATSCMAQAPGSAPAQPPTTPAVPPPSTPPPAASPPPATPPPATPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPAS

Query:  PTSSPSAPPKEGPTSSPT---SSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA
        P +SP+ PPKEGP SSPT   +SPPSPP EG VP+ SPGP+ PPPPP  NGAA+VSRG+MVGGAVAGALLAMVFA
Subjt:  PTSSPSAPPKEGPTSSPT---SSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G10430.1 arabinogalactan protein 44.4e-0448.81Show/hide
Query:  QFVLVLALFATSCMAQAPGSAPAQPPTTPAVPPPSTPPPAASPPP-ATPPPATPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPASPTSS
        Q  L+LALFATS +AQAP       PT  A PPP+TPPP A+PPP ATPPPA    ATP  ATPPPA    ATP PA+TPPS  P     SPA   PT+S
Subjt:  QFVLVLALFATSCMAQAPGSAPAQPPTTPAVPPPSTPPPAASPPP-ATPPPATPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPASPTSS

Query:  PSAPPKEGPTSSPTSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA
        P AP  EGPT SP+S              +PGPS   P P    AA  ++    G A A  + A V A
Subjt:  PSAPPKEGPTSSPTSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAATGGGTTTCCAATTTGTGTTGGTTTTAGCCTTATTTGCCACTTCTTGTATGGCTCAGGCTCCCGGTAGCGCTCCGGCTCAGCCGCCCACCACCCCCGCCGTCCC
TCCGCCATCTACTCCTCCCCCAGCCGCCTCCCCACCTCCAGCCACCCCTCCTCCTGCAACCCCACCACCGGCCACCCCTCCAGTCGCAACCCCACCACCGGCCACCCCTC
CAGTCGCCACCCCACCACCAGCTTCAACCCCACCATCATCACCGCCAGCTTCAGCTCCCACATCTCCCGCCCCAGCATCACCTACATCGTCTCCGAGCGCGCCACCAAAG
GAGGGTCCGACCTCATCTCCAACTTCATCACCGCCATCACCACCACCGGAAGGAAATGTCCCTACGGGAAGCCCAGGACCGAGCCCGCCACCACCCCCACCCGAAGGAAA
TGGCGCAGCCAGCGTTAGCCGGGGAATGATGGTGGGTGGCGCAGTGGCCGGAGCTTTGTTGGCAATGGTATTTGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAATGGGTTTCCAATTTGTGTTGGTTTTAGCCTTATTTGCCACTTCTTGTATGGCTCAGGCTCCCGGTAGCGCTCCGGCTCAGCCGCCCACCACCCCCGCCGTCCC
TCCGCCATCTACTCCTCCCCCAGCCGCCTCCCCACCTCCAGCCACCCCTCCTCCTGCAACCCCACCACCGGCCACCCCTCCAGTCGCAACCCCACCACCGGCCACCCCTC
CAGTCGCCACCCCACCACCAGCTTCAACCCCACCATCATCACCGCCAGCTTCAGCTCCCACATCTCCCGCCCCAGCATCACCTACATCGTCTCCGAGCGCGCCACCAAAG
GAGGGTCCGACCTCATCTCCAACTTCATCACCGCCATCACCACCACCGGAAGGAAATGTCCCTACGGGAAGCCCAGGACCGAGCCCGCCACCACCCCCACCCGAAGGAAA
TGGCGCAGCCAGCGTTAGCCGGGGAATGATGGTGGGTGGCGCAGTGGCCGGAGCTTTGTTGGCAATGGTATTTGCTTAG
Protein sequenceShow/hide protein sequence
MKMGFQFVLVLALFATSCMAQAPGSAPAQPPTTPAVPPPSTPPPAASPPPATPPPATPPPATPPVATPPPATPPVATPPPASTPPSSPPASAPTSPAPASPTSSPSAPPK
EGPTSSPTSSPPSPPPEGNVPTGSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGALLAMVFA