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Clc10G09000 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc10G09000
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionMitochondrial import inner membrane translocase subunit TIM22-4-like
Genome locationClcChr10:20673009..20675914
RNA-Seq ExpressionClc10G09000
SyntenyClc10G09000
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0098660 - inorganic ion transmembrane transport (biological process)
GO:0005743 - mitochondrial inner membrane (cellular component)
GO:0003824 - catalytic activity (molecular function)
GO:0015318 - inorganic molecular entity transmembrane transporter activity (molecular function)
GO:0022804 - active transmembrane transporter activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0051536 - iron-sulfur cluster binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039024.1 uncharacterized protein E6C27_scaffold84G001110 [Cucumis melo var. makuwa]4.6e-1645.83Show/hide
Query:  LVEGFDFRLGSRDVRVWSLSPLESFTCKSFFRLLLNPSPVAESVFNVLWRIKIPKKVKFISW--QRDARLLIGEFLLHPPFKEKSHVLLWAGVCAV
        ++E   FRLG RDVRVWS +PLE F+CKSF + ++NPS   E VF+++WR+K+ +K   IS+   RD R++I + L +PP +E  H L  + VC +
Subjt:  LVEGFDFRLGSRDVRVWSLSPLESFTCKSFFRLLLNPSPVAESVFNVLWRIKIPKKVKFISW--QRDARLLIGEFLLHPPFKEKSHVLLWAGVCAV

KAA0060009.1 mitochondrial import inner membrane translocase subunit TIM22-4-like [Cucumis melo var. makuwa]2.3e-2346.15Show/hide
Query:  DFRLGSRDVRVWSLSPLESFTCKSFFRLLLNPSPVAESVFNVLWRIKIPKKVKFIS----------W--------------------QRDARLLIGEFLL
        DFRLG RDVRVWS +P+E F+CKSFFR+L+N S V ESVF VLW +KIPKK   +S          W                    QR+  ++IGEFLL
Subjt:  DFRLGSRDVRVWSLSPLESFTCKSFFRLLLNPSPVAESVFNVLWRIKIPKKVKFIS----------W--------------------QRDARLLIGEFLL

Query:  HPPFKEKSHVLLWAGVCAVLWDLWGERNNRVF--------VVWRGTLGRFGLWPVS
        HP F+ K H LL  GVC V+W + G RNN+VF         VW  +L RF  W  S
Subjt:  HPPFKEKSHVLLWAGVCAVLWDLWGERNNRVF--------VVWRGTLGRFGLWPVS

TYJ96725.1 hypothetical protein E5676_scaffold986G00130 [Cucumis melo var. makuwa]1.5e-1440.44Show/hide
Query:  LSLVEGFDFRLGSRDVRVWSLSPLESFTCKSFFRLLLNPSPVAESVFNVLWRIKIPKK-------------------------VKFI-----------SW
        LSL+E F FR G RDV VWS +P   F+ KS F  LL+ SP+ ESVF V+ R ++ KK                         V+FI           + 
Subjt:  LSLVEGFDFRLGSRDVRVWSLSPLESFTCKSFFRLLLNPSPVAESVFNVLWRIKIPKK-------------------------VKFI-----------SW

Query:  QRDARLLIGEFLLHPPFKEKSHVLLWAGVCAVLWDL
        Q+     I +FLLHPPFKEK   L +AGVCAV WD+
Subjt:  QRDARLLIGEFLLHPPFKEKSHVLLWAGVCAVLWDL

TYJ97267.1 mitochondrial import inner membrane translocase subunit TIM22-4-like [Cucumis melo var. makuwa]2.3e-2346.15Show/hide
Query:  DFRLGSRDVRVWSLSPLESFTCKSFFRLLLNPSPVAESVFNVLWRIKIPKKVKFIS----------W--------------------QRDARLLIGEFLL
        DFRLG RDVRVWS +P+E F+CKSFFR+L+N S V ESVF VLW +KIPKK   +S          W                    QR+  ++IGEFLL
Subjt:  DFRLGSRDVRVWSLSPLESFTCKSFFRLLLNPSPVAESVFNVLWRIKIPKKVKFIS----------W--------------------QRDARLLIGEFLL

Query:  HPPFKEKSHVLLWAGVCAVLWDLWGERNNRVF--------VVWRGTLGRFGLWPVS
        HP F+ K H LL  GVC V+W + G RNN+VF         VW  +L RF  W  S
Subjt:  HPPFKEKSHVLLWAGVCAVLWDLWGERNNRVF--------VVWRGTLGRFGLWPVS

TYK09969.1 calpain-type cysteine protease DEK1 [Cucumis melo var. makuwa]1.5e-1438.97Show/hide
Query:  TDVVSRLSLVEGFDFRLGSRDVRVWSLSPLESFTCKSFFRLLLNPSPVAESVFNVLWRIKIPKKVKFISWQ-----------------------------
        ++VV+ +SL+E   FRLG RDV VWS  PLE F CKSFF+ L+N +P +ESV +++WRIK+P+K    SWQ                             
Subjt:  TDVVSRLSLVEGFDFRLGSRDVRVWSLSPLESFTCKSFFRLLLNPSPVAESVFNVLWRIKIPKKVKFISWQ-----------------------------

Query:  ----RDARLLIGEFLLHPPFKEKSHVLLWAGVCAVL
            RD R  + EFLL+ P  E+   L  A V A L
Subjt:  ----RDARLLIGEFLLHPPFKEKSHVLLWAGVCAVL

TrEMBL top hitse value%identityAlignment
A0A5A7T6A8 Uncharacterized protein2.2e-1645.83Show/hide
Query:  LVEGFDFRLGSRDVRVWSLSPLESFTCKSFFRLLLNPSPVAESVFNVLWRIKIPKKVKFISW--QRDARLLIGEFLLHPPFKEKSHVLLWAGVCAV
        ++E   FRLG RDVRVWS +PLE F+CKSF + ++NPS   E VF+++WR+K+ +K   IS+   RD R++I + L +PP +E  H L  + VC +
Subjt:  LVEGFDFRLGSRDVRVWSLSPLESFTCKSFFRLLLNPSPVAESVFNVLWRIKIPKKVKFISW--QRDARLLIGEFLLHPPFKEKSHVLLWAGVCAV

A0A5A7V2G8 Mitochondrial import inner membrane translocase subunit TIM22-4-like1.1e-2346.15Show/hide
Query:  DFRLGSRDVRVWSLSPLESFTCKSFFRLLLNPSPVAESVFNVLWRIKIPKKVKFIS----------W--------------------QRDARLLIGEFLL
        DFRLG RDVRVWS +P+E F+CKSFFR+L+N S V ESVF VLW +KIPKK   +S          W                    QR+  ++IGEFLL
Subjt:  DFRLGSRDVRVWSLSPLESFTCKSFFRLLLNPSPVAESVFNVLWRIKIPKKVKFIS----------W--------------------QRDARLLIGEFLL

Query:  HPPFKEKSHVLLWAGVCAVLWDLWGERNNRVF--------VVWRGTLGRFGLWPVS
        HP F+ K H LL  GVC V+W + G RNN+VF         VW  +L RF  W  S
Subjt:  HPPFKEKSHVLLWAGVCAVLWDLWGERNNRVF--------VVWRGTLGRFGLWPVS

A0A5D3BDR8 Mitochondrial import inner membrane translocase subunit TIM22-4-like1.1e-2346.15Show/hide
Query:  DFRLGSRDVRVWSLSPLESFTCKSFFRLLLNPSPVAESVFNVLWRIKIPKKVKFIS----------W--------------------QRDARLLIGEFLL
        DFRLG RDVRVWS +P+E F+CKSFFR+L+N S V ESVF VLW +KIPKK   +S          W                    QR+  ++IGEFLL
Subjt:  DFRLGSRDVRVWSLSPLESFTCKSFFRLLLNPSPVAESVFNVLWRIKIPKKVKFIS----------W--------------------QRDARLLIGEFLL

Query:  HPPFKEKSHVLLWAGVCAVLWDLWGERNNRVF--------VVWRGTLGRFGLWPVS
        HP F+ K H LL  GVC V+W + G RNN+VF         VW  +L RF  W  S
Subjt:  HPPFKEKSHVLLWAGVCAVLWDLWGERNNRVF--------VVWRGTLGRFGLWPVS

A0A5D3BE33 Uncharacterized protein7.1e-1540.44Show/hide
Query:  LSLVEGFDFRLGSRDVRVWSLSPLESFTCKSFFRLLLNPSPVAESVFNVLWRIKIPKK-------------------------VKFI-----------SW
        LSL+E F FR G RDV VWS +P   F+ KS F  LL+ SP+ ESVF V+ R ++ KK                         V+FI           + 
Subjt:  LSLVEGFDFRLGSRDVRVWSLSPLESFTCKSFFRLLLNPSPVAESVFNVLWRIKIPKK-------------------------VKFI-----------SW

Query:  QRDARLLIGEFLLHPPFKEKSHVLLWAGVCAVLWDL
        Q+     I +FLLHPPFKEK   L +AGVCAV WD+
Subjt:  QRDARLLIGEFLLHPPFKEKSHVLLWAGVCAVLWDL

A0A5D3CI74 Calpain-type cysteine protease DEK17.1e-1538.97Show/hide
Query:  TDVVSRLSLVEGFDFRLGSRDVRVWSLSPLESFTCKSFFRLLLNPSPVAESVFNVLWRIKIPKKVKFISWQ-----------------------------
        ++VV+ +SL+E   FRLG RDV VWS  PLE F CKSFF+ L+N +P +ESV +++WRIK+P+K    SWQ                             
Subjt:  TDVVSRLSLVEGFDFRLGSRDVRVWSLSPLESFTCKSFFRLLLNPSPVAESVFNVLWRIKIPKKVKFISWQ-----------------------------

Query:  ----RDARLLIGEFLLHPPFKEKSHVLLWAGVCAVL
            RD R  + EFLL+ P  E+   L  A V A L
Subjt:  ----RDARLLIGEFLLHPPFKEKSHVLLWAGVCAVL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGGATGTGGTGTCTCGTCTTTCTTTGGTGGAAGGTTTTGATTTTAGGTTGGGGAGCAGGGATGTTCGTGTTTGGAGTTTGAGCCCCTTGGAGAGTTTTACT
TGTAAGTCTTTTTTCAGGCTTTTACTGAACCCCTCTCCTGTTGCTGAGTCCGTCTTTAATGTTTTGTGGAGGATTAAGATTCCAAAGAAAGTCAAGTTTATCTCC
TGGCAAAGAGATGCTCGCCTGTTGATCGGGGAGTTCCTCCTCCATCCGCCTTTCAAAGAGAAAAGCCATGTTCTTTTATGGGCTGGGGTGTGTGCGGTCTTGTGG
GACCTTTGGGGGGAAAGGAACAATAGAGTGTTCGTGGTGTGGAGAGGGACCCTAGGGAGGTTTGGTCTTTGGCCGGTAAGTGCCGACCTCACATCTTTGCCTGGT
CACCCTTTAATGGGTCTGGCCCAATGCCCAGGACTCAGACGAGGATTCGGAATCCGGATTCAACACCTGACGGCCTTGACATTTCCCTGCATCACCTGCGACTTG
GTCATGTCATCCTTGCTTGTCTCGAATGCTTCTAAGAGTGAAGATTATCCCCACAAACCAACGCGGGTCCTTTTAGCATGCTTTGTCTTCACTCATATGCATCCT
ATGAAAATTCTCAAGAGGTCACCCAACATAAGTTGCTCCAAGCTAAGTACACTTAATTGTGGAGTTCCTATGATTGAGCCACAGAAAAGGAAGAACATTCAAGCC
TTAGATTCTAGAGCCGATGTGTTGTCTAATCCCTATGTTGCAGATTTGGTTCCCAACCATTGCAGATTTGGTTCCCAACCAAAGGCCATGAAATCAAATTCGGAG
GGGACATGGGCTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGACGGATGTGGTGTCTCGTCTTTCTTTGGTGGAAGGTTTTGATTTTAGGTTGGGGAGCAGGGATGTTCGTGTTTGGAGTTTGAGCCCCTTGGAGAGTTTTACT
TGTAAGTCTTTTTTCAGGCTTTTACTGAACCCCTCTCCTGTTGCTGAGTCCGTCTTTAATGTTTTGTGGAGGATTAAGATTCCAAAGAAAGTCAAGTTTATCTCC
TGGCAAAGAGATGCTCGCCTGTTGATCGGGGAGTTCCTCCTCCATCCGCCTTTCAAAGAGAAAAGCCATGTTCTTTTATGGGCTGGGGTGTGTGCGGTCTTGTGG
GACCTTTGGGGGGAAAGGAACAATAGAGTGTTCGTGGTGTGGAGAGGGACCCTAGGGAGGTTTGGTCTTTGGCCGGTAAGTGCCGACCTCACATCTTTGCCTGGT
CACCCTTTAATGGGTCTGGCCCAATGCCCAGGACTCAGACGAGGATTCGGAATCCGGATTCAACACCTGACGGCCTTGACATTTCCCTGCATCACCTGCGACTTG
GTCATGTCATCCTTGCTTGTCTCGAATGCTTCTAAGAGTGAAGATTATCCCCACAAACCAACGCGGGTCCTTTTAGCATGCTTTGTCTTCACTCATATGCATCCT
ATGAAAATTCTCAAGAGGTCACCCAACATAAGTTGCTCCAAGCTAAGTACACTTAATTGTGGAGTTCCTATGATTGAGCCACAGAAAAGGAAGAACATTCAAGCC
TTAGATTCTAGAGCCGATGTGTTGTCTAATCCCTATGTTGCAGATTTGGTTCCCAACCATTGCAGATTTGGTTCCCAACCAAAGGCCATGAAATCAAATTCGGAG
GGGACATGGGCTTTGTAA
Protein sequenceShow/hide protein sequence
MTDVVSRLSLVEGFDFRLGSRDVRVWSLSPLESFTCKSFFRLLLNPSPVAESVFNVLWRIKIPKKVKFISWQRDARLLIGEFLLHPPFKEKSHVLLWAGVCAVLW
DLWGERNNRVFVVWRGTLGRFGLWPVSADLTSLPGHPLMGLAQCPGLRRGFGIRIQHLTALTFPCITCDLVMSSLLVSNASKSEDYPHKPTRVLLACFVFTHMHP
MKILKRSPNISCSKLSTLNCGVPMIEPQKRKNIQALDSRADVLSNPYVADLVPNHCRFGSQPKAMKSNSEGTWAL