CuGenDBv2

Gene ID	Clc10G09820
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	ClcChr10:22125627..22128473
RNA-Seq Expression	Clc10G09820
Synteny	Clc10G09820
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

RVW14192.1 Copia protein [Vitis vinifera]

7.8e-29

61.68

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Query:  IDNPISEEGEIPKDNNEISINYVMIRKRWNRTNIVIDNIFAHIVVLDIISENEDRKPKSVEECRHRKDWLRWKEAIEVELNSLSKRQVFRPVVRTLEDVK
        I+    EE ++P +N EIS++YV   ++W+R NIVI+NIFA  V  DII  +ED +P++VEECRHR DW +WKEAI+VELNSL+KR+VF PVV+T EDVK
Subjt:  IDNPISEEGEIPKDNNEISINYVMIRKRWNRTNIVIDNIFAHIVVLDIISENEDRKPKSVEECRHRKDWLRWKEAIEVELNSLSKRQVFRPVVRTLEDVK

Query:  PVGYKWV
        PVGYKWV
Subjt:  PVGYKWV

RVW43290.1 Copia protein [Vitis vinifera]

7.8e-29

61.68

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Query:  IDNPISEEGEIPKDNNEISINYVMIRKRWNRTNIVIDNIFAHIVVLDIISENEDRKPKSVEECRHRKDWLRWKEAIEVELNSLSKRQVFRPVVRTLEDVK
        I+    EE ++PK N EISI+YV   ++W+R NIVI+NIFA  V  DII  +ED +P++VEECRHR DW +WK+ I+VELNSL+KR+VF PVV+T EDVK
Subjt:  IDNPISEEGEIPKDNNEISINYVMIRKRWNRTNIVIDNIFAHIVVLDIISENEDRKPKSVEECRHRKDWLRWKEAIEVELNSLSKRQVFRPVVRTLEDVK

Query:  PVGYKWV
        PVGYKWV
Subjt:  PVGYKWV

RVW57676.1 Copia protein [Vitis vinifera]

6.0e-29

61.68

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Query:  IDNPISEEGEIPKDNNEISINYVMIRKRWNRTNIVIDNIFAHIVVLDIISENEDRKPKSVEECRHRKDWLRWKEAIEVELNSLSKRQVFRPVVRTLEDVK
        I+    EE ++PK N EIS++YV   ++W+R NIVI+NIFA  V  DII  +ED +P++VEECRHR DW +WKEAI+ ELNSL+KR+VF PVV+T EDVK
Subjt:  IDNPISEEGEIPKDNNEISINYVMIRKRWNRTNIVIDNIFAHIVVLDIISENEDRKPKSVEECRHRKDWLRWKEAIEVELNSLSKRQVFRPVVRTLEDVK

Query:  PVGYKWV
        PVGYKWV
Subjt:  PVGYKWV

RVW80615.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

4.6e-29

61.68

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Query:  IDNPISEEGEIPKDNNEISINYVMIRKRWNRTNIVIDNIFAHIVVLDIISENEDRKPKSVEECRHRKDWLRWKEAIEVELNSLSKRQVFRPVVRTLEDVK
        I+    EE ++P +N EIS++YV   ++W+R NIVI+NIFA  V  DII  +ED +P++VEECRHR DW +WKEAI+ ELNSL+KR+VF PVV+TLEDVK
Subjt:  IDNPISEEGEIPKDNNEISINYVMIRKRWNRTNIVIDNIFAHIVVLDIISENEDRKPKSVEECRHRKDWLRWKEAIEVELNSLSKRQVFRPVVRTLEDVK

Query:  PVGYKWV
        PVGYKWV
Subjt:  PVGYKWV

RVW94544.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

1.0e-28

60.75

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Query:  IDNPISEEGEIPKDNNEISINYVMIRKRWNRTNIVIDNIFAHIVVLDIISENEDRKPKSVEECRHRKDWLRWKEAIEVELNSLSKRQVFRPVVRTLEDVK
        I+    EE ++P +N EIS++YV   ++W+R NIVI+NIFA  V  DII  +ED +P++VEECRHR DW +WKEAI+ ELNSL+KR+VF PVV+T EDVK
Subjt:  IDNPISEEGEIPKDNNEISINYVMIRKRWNRTNIVIDNIFAHIVVLDIISENEDRKPKSVEECRHRKDWLRWKEAIEVELNSLSKRQVFRPVVRTLEDVK

Query:  PVGYKWV
        PVGYKWV
Subjt:  PVGYKWV

TrEMBL top hits

e value

%identity

Alignment

A0A438BTB5 Copia protein

3.8e-29

61.68

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Query:  IDNPISEEGEIPKDNNEISINYVMIRKRWNRTNIVIDNIFAHIVVLDIISENEDRKPKSVEECRHRKDWLRWKEAIEVELNSLSKRQVFRPVVRTLEDVK
        I+    EE ++P +N EIS++YV   ++W+R NIVI+NIFA  V  DII  +ED +P++VEECRHR DW +WKEAI+VELNSL+KR+VF PVV+T EDVK
Subjt:  IDNPISEEGEIPKDNNEISINYVMIRKRWNRTNIVIDNIFAHIVVLDIISENEDRKPKSVEECRHRKDWLRWKEAIEVELNSLSKRQVFRPVVRTLEDVK

Query:  PVGYKWV
        PVGYKWV
Subjt:  PVGYKWV

A0A438E6Q0 Copia protein

3.8e-29

61.68

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Query:  IDNPISEEGEIPKDNNEISINYVMIRKRWNRTNIVIDNIFAHIVVLDIISENEDRKPKSVEECRHRKDWLRWKEAIEVELNSLSKRQVFRPVVRTLEDVK
        I+    EE ++PK N EISI+YV   ++W+R NIVI+NIFA  V  DII  +ED +P++VEECRHR DW +WK+ I+VELNSL+KR+VF PVV+T EDVK
Subjt:  IDNPISEEGEIPKDNNEISINYVMIRKRWNRTNIVIDNIFAHIVVLDIISENEDRKPKSVEECRHRKDWLRWKEAIEVELNSLSKRQVFRPVVRTLEDVK

Query:  PVGYKWV
        PVGYKWV
Subjt:  PVGYKWV

A0A438FCH2 Copia protein

2.9e-29

61.68

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Query:  IDNPISEEGEIPKDNNEISINYVMIRKRWNRTNIVIDNIFAHIVVLDIISENEDRKPKSVEECRHRKDWLRWKEAIEVELNSLSKRQVFRPVVRTLEDVK
        I+    EE ++PK N EIS++YV   ++W+R NIVI+NIFA  V  DII  +ED +P++VEECRHR DW +WKEAI+ ELNSL+KR+VF PVV+T EDVK
Subjt:  IDNPISEEGEIPKDNNEISINYVMIRKRWNRTNIVIDNIFAHIVVLDIISENEDRKPKSVEECRHRKDWLRWKEAIEVELNSLSKRQVFRPVVRTLEDVK

Query:  PVGYKWV
        PVGYKWV
Subjt:  PVGYKWV

A0A438H801 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.2e-29

61.68

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Query:  IDNPISEEGEIPKDNNEISINYVMIRKRWNRTNIVIDNIFAHIVVLDIISENEDRKPKSVEECRHRKDWLRWKEAIEVELNSLSKRQVFRPVVRTLEDVK
        I+    EE ++P +N EIS++YV   ++W+R NIVI+NIFA  V  DII  +ED +P++VEECRHR DW +WKEAI+ ELNSL+KR+VF PVV+TLEDVK
Subjt:  IDNPISEEGEIPKDNNEISINYVMIRKRWNRTNIVIDNIFAHIVVLDIISENEDRKPKSVEECRHRKDWLRWKEAIEVELNSLSKRQVFRPVVRTLEDVK

Query:  PVGYKWV
        PVGYKWV
Subjt:  PVGYKWV

A0A438ID00 Retrovirus-related Pol polyprotein from transposon TNT 1-94

4.9e-29

60.75

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Query:  IDNPISEEGEIPKDNNEISINYVMIRKRWNRTNIVIDNIFAHIVVLDIISENEDRKPKSVEECRHRKDWLRWKEAIEVELNSLSKRQVFRPVVRTLEDVK
        I+    EE ++P +N EIS++YV   ++W+R NIVI+NIFA  V  DII  +ED +P++VEECRHR DW +WKEAI+ ELNSL+KR+VF PVV+T EDVK
Subjt:  IDNPISEEGEIPKDNNEISINYVMIRKRWNRTNIVIDNIFAHIVVLDIISENEDRKPKSVEECRHRKDWLRWKEAIEVELNSLSKRQVFRPVVRTLEDVK

Query:  PVGYKWV
        PVGYKWV
Subjt:  PVGYKWV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGATTGATAATCCAATTAGTGAAGAAGGTGAAATACCTAAAGATAATAATGAGATTTCAATAAATTATGTCATGATAAGGAAAAGATGGAACCGAACTAATATA
GTTATTGATAACATTTTTGCACATATTGTTGTACTTGATATTATATCTGAAAATGAGGATCGTAAACCAAAATCTGTTGAAGAATGTCGACATAGAAAAGATTGG
CTTCGATGGAAAGAAGCAATCGAGGTAGAATTAAACTCACTTTCAAAACGTCAAGTTTTTAGACCAGTAGTCCGAACACTAGAAGATGTCAAACCTGTGGGATAC
AAATGGGTCAAACCTTCCATCAATTCTCTTTCTACCTGTTTGTTAGTGGAGGATTTCTGA

mRNA sequence

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Protein sequence

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MIDNPISEEGEIPKDNNEISINYVMIRKRWNRTNIVIDNIFAHIVVLDIISENEDRKPKSVEECRHRKDWLRWKEAIEVELNSLSKRQVFRPVVRTLEDVKPVGY
KWVKPSINSLSTCLLVEDF

Clc10G09820 (gene) of Watermelon (cordophanus) v2 genome