CuGenDBv2

Gene ID	Clc10G09860
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	mediator of RNA polymerase II transcription subunit 28
Genome location	ClcChr10:22152729..22157180
RNA-Seq Expression	Clc10G09860
Synteny	Clc10G09860
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0016592 - mediator complex (cellular component)
InterPro domains	IPR007513 - Uncharacterised protein family SERF, N-terminal IPR026939 - ZNF706/At2g23090 superfamily IPR034456 - Mediator of RNA polymerase II transcription subunit 28

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004152267.1 mediator of RNA polymerase II transcription subunit 28 [Cucumis sativus]

9.2e-66

95.04

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Query:  MAERQPLDQQHALDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQP+DQQH+LDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHALDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEKV
        AIEEELK+K+ IIKKQE+LI+GWKKDLKDQLDKHNNELEKV
Subjt:  AIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEKV

XP_008454378.1 PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo]

2.3e-64

94.33

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Query:  MAERQPLDQQHALDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQ LDQQH+LDPQ QSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHALDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEKV
        AIEEELK+K+ IIKKQERLI+GWKKDLK+QLDKHNNELEKV
Subjt:  AIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEKV

XP_022149222.1 mediator of RNA polymerase II transcription subunit 28 [Momordica charantia]

4.3e-63

92.2

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Query:  MAERQPLDQQHALDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MA+RQP+DQQH LDPQLQS QSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEIS
Subjt:  MAERQPLDQQHALDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEKV
        AIEEELKLK+ IIKK ERLI+GWKKDLKDQL KHNNELEKV
Subjt:  AIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEKV

XP_022922953.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita moschata]

1.6e-65

94.33

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Query:  MAERQPLDQQHALDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQPLDQQ+ +DPQLQSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHALDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEKV
        AIEEELKLKD IIKKQERLI+GWKKDLKDQLDKHNNELEKV
Subjt:  AIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEKV

XP_038904970.1 mediator of RNA polymerase II transcription subunit 28 [Benincasa hispida]

7.1e-66

96.45

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Query:  MAERQPLDQQHALDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQPLDQQH LDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEIS
Subjt:  MAERQPLDQQHALDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEKV
        AIEEELKLK+ IIKKQERLI+GWKKDLKDQLDKHNNELEKV
Subjt:  AIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEKV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KT19 Uncharacterized protein

4.5e-66

95.04

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Query:  MAERQPLDQQHALDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQP+DQQH+LDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHALDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEKV
        AIEEELK+K+ IIKKQE+LI+GWKKDLKDQLDKHNNELEKV
Subjt:  AIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEKV

A0A1S3BZ89 mediator of RNA polymerase II transcription subunit 28

1.1e-64

94.33

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Query:  MAERQPLDQQHALDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQ LDQQH+LDPQ QSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHALDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEKV
        AIEEELK+K+ IIKKQERLI+GWKKDLK+QLDKHNNELEKV
Subjt:  AIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEKV

A0A5A7TRZ8 Mediator of RNA polymerase II transcription subunit 28

1.1e-64

94.33

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Query:  MAERQPLDQQHALDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQ LDQQH+LDPQ QSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHALDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEKV
        AIEEELK+K+ IIKKQERLI+GWKKDLK+QLDKHNNELEKV
Subjt:  AIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEKV

A0A6J1E897 mediator of RNA polymerase II transcription subunit 28

7.6e-66

94.33

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Query:  MAERQPLDQQHALDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQPLDQQ+ +DPQLQSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHALDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEKV
        AIEEELKLKD IIKKQERLI+GWKKDLKDQLDKHNNELEKV
Subjt:  AIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEKV

A0A6J1JAT8 mediator of RNA polymerase II transcription subunit 28

7.6e-66

94.33

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Query:  MAERQPLDQQHALDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQPLDQQ+ +DPQLQSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHALDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEKV
        AIEEELKLKD IIKKQERLI+GWKKDLKDQLDKHNNELEKV
Subjt:  AIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEKV

SwissProt top hits

e value

%identity

Alignment

O64818 Uncharacterized protein At2g23090

3.6e-04

69.23

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Query:  MEGGNGQKAKMARERNLEKQKGA-KGSQLDSNKKAMTIQ
        M GGN QK+ MAR +NLEK K A KGSQL++NKKAM+IQ
Subjt:  MEGGNGQKAKMARERNLEKQKGA-KGSQLDSNKKAMTIQ

Q9LFA5 Mediator of RNA polymerase II transcription subunit 28

2.9e-38

63.7

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Query:  PQLQSSQSPR-------EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEEL
        P ++S ++P        ED++A V ALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYF+GL+RED+ P++ E+L+K+I+ +EEEL
Subjt:  PQLQSSQSPR-------EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEEL

Query:  KLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEKV
        K KD +IKK  RL    +K +K+Q++KH +ELEKV
Subjt:  KLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEKV

Arabidopsis top hits

e value

%identity

Alignment

AT2G23090.1 Uncharacterised protein family SERF

2.5e-05

69.23

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Query:  MEGGNGQKAKMARERNLEKQKGA-KGSQLDSNKKAMTIQ
        M GGN QK+ MAR +NLEK K A KGSQL++NKKAM+IQ
Subjt:  MEGGNGQKAKMARERNLEKQKGA-KGSQLDSNKKAMTIQ

AT3G52860.1 unknown protein

2.1e-39

63.7

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Query:  PQLQSSQSPR-------EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEEL
        P ++S ++P        ED++A V ALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYF+GL+RED+ P++ E+L+K+I+ +EEEL
Subjt:  PQLQSSQSPR-------EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEEL

Query:  KLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEKV
        K KD +IKK  RL    +K +K+Q++KH +ELEKV
Subjt:  KLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEKV

Sequences

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CDS sequence

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ATGATCAGGTTGGGAAATTCCCAGTTTGACCGCGTCAAACTGGGGACATTCCCCGAGTACCCGTCTAGGGACGGGGCGGGGACGCGGTACCCACCTTCCCCGGCCCCGAC
CCCGACCCCGGCCTTCTCGCTCTCTCTCTCAATCTCGCACTCTCGCTCTCTCAATTCTCATGGAGAATCGGGCCCCCGCAAGGACCCGTCTCCGCCTATTTTAGGTGGGG
ACGAGGGCAAGGATGGGGATCCCCACCCGCCCCGGCTTGGCCCGCCCTCGTTGCCATCCCTAATGAGATTTGAACTACAGATCTCGTGGTTATTAACACTTTTTATGCCA
TTTGAGCGGTCTCCTCTGTTTCCTTTCACCGCAAAGAGGAGCAAATTCGTCGCCTTATCCTCTCTATTTCCTCAAATCGATTCCGCCATGGAAGGAGGCAATGGTCAGAA
GGCTAAGATGGCTCGTGAGAGAAACTTGGAGAAACAAAAAGGCGCCAAGGGAAGCCAGCTTGATTCCAACAAAAAAGCTATGACTATTCAGGATATGGCTGAACGACAAC
CACTCGACCAACAGCATGCACTTGATCCACAATTGCAATCATCACAGTCTCCAAGAGAAGATATGATTGCATATGTGATGGCCTTGGAAGCTGCTTTGCTTCCATGCTTG
CCTGCAAGAGAACTACAAGCAATAGACCGTTCTCCTCACCCTTCTCATCAAGTTGACGTGGAAAGACATGCTAGGGATTTCATGGAAGCAGCTAAAAAGCTTCAATTATA
TTTCATTGGTTTACAACGCGAGGATCAACCAACCAAAGTGGAAACACTAAGAAAGGAGATATCTGCCATTGAGGAGGAATTGAAGTTAAAGGATGGCATAATCAAGAAGC
AGGAGAGGCTCATTGATGGGTGGAAGAAGGATCTGAAAGACCAGTTAGACAAACATAACAATGAATTAGAGAAGGTTTAA

mRNA sequence

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Protein sequence

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MIRLGNSQFDRVKLGTFPEYPSRDGAGTRYPPSPAPTPTPAFSLSLSISHSRSLNSHGESGPRKDPSPPILGGDEGKDGDPHPPRLGPPSLPSLMRFELQISWLLTLFMP
FERSPLFPFTAKRSKFVALSSLFPQIDSAMEGGNGQKAKMARERNLEKQKGAKGSQLDSNKKAMTIQDMAERQPLDQQHALDPQLQSSQSPREDMIAYVMALEAALLPCL
PARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDGIIKKQERLIDGWKKDLKDQLDKHNNELEKV

Clc10G09860 (gene) of Watermelon (cordophanus) v2 genome