; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc10G10250 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc10G10250
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationClcChr10:22991917..22998973
RNA-Seq ExpressionClc10G10250
SyntenyClc10G10250
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059849.1 uncharacterized protein E6C27_scaffold108G001320 [Cucumis melo var. makuwa]1.9e-3445.08Show/hide
Query:  ELTGDTKSSWPSSGQLPAAALSVKYVVLHKIGIANLCPSTHGSSASSTLVSLLYQIFTCPTFNFGVFVFNQLLRHVDSFAIKLPICFPCLLSGFLIAQCP
        EL+G   SSW  +G +PAAALSVKY +LHKIGIAN  PS+H SS S+ L + LY+I      + G F++NQLLRHV SF +KLPI  P   SG L+    
Subjt:  ELTGDTKSSWPSSGQLPAAALSVKYVVLHKIGIANLCPSTHGSSASSTLVSLLYQIFTCPTFNFGVFVFNQLLRHVDSFAIKLPICFPCLLSGFLIAQCP

Query:  SVLGLSEGPSPDPSVLNLSYKLFQGSHVPDIVHNIRPLKAVNIPLPKNLQA---GYIFLLDLGTHILRILSSESCALCLVIGDLTDRQAKIDA
        ++L  S+ P PDP  L+LSY+LFQGSHVPDI H++ P     +    +      G+    +L + IL  L+++S +L  VI  +++R+ +ID+
Subjt:  SVLGLSEGPSPDPSVLNLSYKLFQGSHVPDIVHNIRPLKAVNIPLPKNLQA---GYIFLLDLGTHILRILSSESCALCLVIGDLTDRQAKIDA

KAA0066406.1 uncharacterized protein E6C27_scaffold21G004820 [Cucumis melo var. makuwa]1.2e-3345.83Show/hide
Query:  LTGDTKSSWPSSGQLPAAALSVKYVVLHKIGIANLCPSTHGSSASSTLVSLLYQIFTCPTFNFGVFVFNQLLRHVDSFAIKLPICFPCLLSGFLIAQCPS
        L+G T S+WP +G +P AALSVKY +LHKIGIAN  PS+H SS S+ L + LYQI      + G F++NQLL HV SF +K+PI FP L S  L+     
Subjt:  LTGDTKSSWPSSGQLPAAALSVKYVVLHKIGIANLCPSTHGSSASSTLVSLLYQIFTCPTFNFGVFVFNQLLRHVDSFAIKLPICFPCLLSGFLIAQCPS

Query:  VLGLSEGPSPDPSVLNLSYKLFQGSHVPDIVHNIRPLKAVNIPLPKNLQ---AGYIFLLDLGTHILRILSSESCALCLVIGDLTDRQAKIDA
        VL  S+ P P+P  + LSY+LFQGSHVPDI H++ P     I    +      G+    +L T I+  L++ES AL   I  L++R+ ++DA
Subjt:  VLGLSEGPSPDPSVLNLSYKLFQGSHVPDIVHNIRPLKAVNIPLPKNLQ---AGYIFLLDLGTHILRILSSESCALCLVIGDLTDRQAKIDA

KAA0066488.1 uncharacterized protein E6C27_scaffold25G00260 [Cucumis melo var. makuwa]1.9e-3444.56Show/hide
Query:  ELTGDTKSSWPSSGQLPAAALSVKYVVLHKIGIANLCPSTHGSSASSTLVSLLYQIFTCPTFNFGVFVFNQLLRHVDSFAIKLPICFPCLLSGFLIAQCP
        EL+G T SSWP +G + AAALSVKY +LHKIGIAN  PS+H SS S+ L + LY+I      + GVF++N+LLRHV+SF +KLPI  P   SG L+    
Subjt:  ELTGDTKSSWPSSGQLPAAALSVKYVVLHKIGIANLCPSTHGSSASSTLVSLLYQIFTCPTFNFGVFVFNQLLRHVDSFAIKLPICFPCLLSGFLIAQCP

Query:  SVLGLSEGPSPDPSVLNLSYKLFQGSHVPDIVHNIRPLKAVNIPLPKNLQA---GYIFLLDLGTHILRILSSESCALCLVIGDLTDRQAKIDA
        ++L  S+ P PDP  L+LSY+LFQG+HV DI H++   +   +    N      G+    +L + IL  L++ES +L   I  +++R+ +ID+
Subjt:  SVLGLSEGPSPDPSVLNLSYKLFQGSHVPDIVHNIRPLKAVNIPLPKNLQA---GYIFLLDLGTHILRILSSESCALCLVIGDLTDRQAKIDA

TYK00879.1 uncharacterized protein E5676_scaffold602G00380 [Cucumis melo var. makuwa]1.2e-3345.83Show/hide
Query:  LTGDTKSSWPSSGQLPAAALSVKYVVLHKIGIANLCPSTHGSSASSTLVSLLYQIFTCPTFNFGVFVFNQLLRHVDSFAIKLPICFPCLLSGFLIAQCPS
        L+G T S+WP +G +P AALSVKY +LHKIGIAN  PS+H SS S+ L + LYQI      + G F++NQLL HV SF +K+PI FP L S  L+     
Subjt:  LTGDTKSSWPSSGQLPAAALSVKYVVLHKIGIANLCPSTHGSSASSTLVSLLYQIFTCPTFNFGVFVFNQLLRHVDSFAIKLPICFPCLLSGFLIAQCPS

Query:  VLGLSEGPSPDPSVLNLSYKLFQGSHVPDIVHNIRPLKAVNIPLPKNLQ---AGYIFLLDLGTHILRILSSESCALCLVIGDLTDRQAKIDA
        VL  S+ P P+P  + LSY+LFQGSHVPDI H++ P     I    +      G+    +L T I+  L++ES AL   I  L++R+ ++DA
Subjt:  VLGLSEGPSPDPSVLNLSYKLFQGSHVPDIVHNIRPLKAVNIPLPKNLQ---AGYIFLLDLGTHILRILSSESCALCLVIGDLTDRQAKIDA

XP_008466770.1 PREDICTED: uncharacterized protein LOC103504101 [Cucumis melo]1.9e-3445.08Show/hide
Query:  ELTGDTKSSWPSSGQLPAAALSVKYVVLHKIGIANLCPSTHGSSASSTLVSLLYQIFTCPTFNFGVFVFNQLLRHVDSFAIKLPICFPCLLSGFLIAQCP
        EL+G   SSW  +G +PAAALSVKY +LHKIGIAN  PS+H SS S+ L + LY+I      + G F++NQLLRHV SF +KLPI  P   SG L+    
Subjt:  ELTGDTKSSWPSSGQLPAAALSVKYVVLHKIGIANLCPSTHGSSASSTLVSLLYQIFTCPTFNFGVFVFNQLLRHVDSFAIKLPICFPCLLSGFLIAQCP

Query:  SVLGLSEGPSPDPSVLNLSYKLFQGSHVPDIVHNIRPLKAVNIPLPKNLQA---GYIFLLDLGTHILRILSSESCALCLVIGDLTDRQAKIDA
        ++L  S+ P PDP  L+LSY+LFQGSHVPDI H++ P     +    +      G+    +L + IL  L+++S +L  VI  +++R+ +ID+
Subjt:  SVLGLSEGPSPDPSVLNLSYKLFQGSHVPDIVHNIRPLKAVNIPLPKNLQA---GYIFLLDLGTHILRILSSESCALCLVIGDLTDRQAKIDA

TrEMBL top hitse value%identityAlignment
A0A1S3CS20 uncharacterized protein LOC1035041019.1e-3545.08Show/hide
Query:  ELTGDTKSSWPSSGQLPAAALSVKYVVLHKIGIANLCPSTHGSSASSTLVSLLYQIFTCPTFNFGVFVFNQLLRHVDSFAIKLPICFPCLLSGFLIAQCP
        EL+G   SSW  +G +PAAALSVKY +LHKIGIAN  PS+H SS S+ L + LY+I      + G F++NQLLRHV SF +KLPI  P   SG L+    
Subjt:  ELTGDTKSSWPSSGQLPAAALSVKYVVLHKIGIANLCPSTHGSSASSTLVSLLYQIFTCPTFNFGVFVFNQLLRHVDSFAIKLPICFPCLLSGFLIAQCP

Query:  SVLGLSEGPSPDPSVLNLSYKLFQGSHVPDIVHNIRPLKAVNIPLPKNLQA---GYIFLLDLGTHILRILSSESCALCLVIGDLTDRQAKIDA
        ++L  S+ P PDP  L+LSY+LFQGSHVPDI H++ P     +    +      G+    +L + IL  L+++S +L  VI  +++R+ +ID+
Subjt:  SVLGLSEGPSPDPSVLNLSYKLFQGSHVPDIVHNIRPLKAVNIPLPKNLQA---GYIFLLDLGTHILRILSSESCALCLVIGDLTDRQAKIDA

A0A5A7VFI0 Uncharacterized protein9.1e-3544.56Show/hide
Query:  ELTGDTKSSWPSSGQLPAAALSVKYVVLHKIGIANLCPSTHGSSASSTLVSLLYQIFTCPTFNFGVFVFNQLLRHVDSFAIKLPICFPCLLSGFLIAQCP
        EL+G T SSWP +G + AAALSVKY +LHKIGIAN  PS+H SS S+ L + LY+I      + GVF++N+LLRHV+SF +KLPI  P   SG L+    
Subjt:  ELTGDTKSSWPSSGQLPAAALSVKYVVLHKIGIANLCPSTHGSSASSTLVSLLYQIFTCPTFNFGVFVFNQLLRHVDSFAIKLPICFPCLLSGFLIAQCP

Query:  SVLGLSEGPSPDPSVLNLSYKLFQGSHVPDIVHNIRPLKAVNIPLPKNLQA---GYIFLLDLGTHILRILSSESCALCLVIGDLTDRQAKIDA
        ++L  S+ P PDP  L+LSY+LFQG+HV DI H++   +   +    N      G+    +L + IL  L++ES +L   I  +++R+ +ID+
Subjt:  SVLGLSEGPSPDPSVLNLSYKLFQGSHVPDIVHNIRPLKAVNIPLPKNLQA---GYIFLLDLGTHILRILSSESCALCLVIGDLTDRQAKIDA

A0A5A7VJ79 Uncharacterized protein5.9e-3445.83Show/hide
Query:  LTGDTKSSWPSSGQLPAAALSVKYVVLHKIGIANLCPSTHGSSASSTLVSLLYQIFTCPTFNFGVFVFNQLLRHVDSFAIKLPICFPCLLSGFLIAQCPS
        L+G T S+WP +G +P AALSVKY +LHKIGIAN  PS+H SS S+ L + LYQI      + G F++NQLL HV SF +K+PI FP L S  L+     
Subjt:  LTGDTKSSWPSSGQLPAAALSVKYVVLHKIGIANLCPSTHGSSASSTLVSLLYQIFTCPTFNFGVFVFNQLLRHVDSFAIKLPICFPCLLSGFLIAQCPS

Query:  VLGLSEGPSPDPSVLNLSYKLFQGSHVPDIVHNIRPLKAVNIPLPKNLQ---AGYIFLLDLGTHILRILSSESCALCLVIGDLTDRQAKIDA
        VL  S+ P P+P  + LSY+LFQGSHVPDI H++ P     I    +      G+    +L T I+  L++ES AL   I  L++R+ ++DA
Subjt:  VLGLSEGPSPDPSVLNLSYKLFQGSHVPDIVHNIRPLKAVNIPLPKNLQ---AGYIFLLDLGTHILRILSSESCALCLVIGDLTDRQAKIDA

A0A5D3BS10 Uncharacterized protein5.9e-3445.83Show/hide
Query:  LTGDTKSSWPSSGQLPAAALSVKYVVLHKIGIANLCPSTHGSSASSTLVSLLYQIFTCPTFNFGVFVFNQLLRHVDSFAIKLPICFPCLLSGFLIAQCPS
        L+G T S+WP +G +P AALSVKY +LHKIGIAN  PS+H SS S+ L + LYQI      + G F++NQLL HV SF +K+PI FP L S  L+     
Subjt:  LTGDTKSSWPSSGQLPAAALSVKYVVLHKIGIANLCPSTHGSSASSTLVSLLYQIFTCPTFNFGVFVFNQLLRHVDSFAIKLPICFPCLLSGFLIAQCPS

Query:  VLGLSEGPSPDPSVLNLSYKLFQGSHVPDIVHNIRPLKAVNIPLPKNLQ---AGYIFLLDLGTHILRILSSESCALCLVIGDLTDRQAKIDA
        VL  S+ P P+P  + LSY+LFQGSHVPDI H++ P     I    +      G+    +L T I+  L++ES AL   I  L++R+ ++DA
Subjt:  VLGLSEGPSPDPSVLNLSYKLFQGSHVPDIVHNIRPLKAVNIPLPKNLQ---AGYIFLLDLGTHILRILSSESCALCLVIGDLTDRQAKIDA

A0A5D3DMD7 Uncharacterized protein9.1e-3545.08Show/hide
Query:  ELTGDTKSSWPSSGQLPAAALSVKYVVLHKIGIANLCPSTHGSSASSTLVSLLYQIFTCPTFNFGVFVFNQLLRHVDSFAIKLPICFPCLLSGFLIAQCP
        EL+G   SSW  +G +PAAALSVKY +LHKIGIAN  PS+H SS S+ L + LY+I      + G F++NQLLRHV SF +KLPI  P   SG L+    
Subjt:  ELTGDTKSSWPSSGQLPAAALSVKYVVLHKIGIANLCPSTHGSSASSTLVSLLYQIFTCPTFNFGVFVFNQLLRHVDSFAIKLPICFPCLLSGFLIAQCP

Query:  SVLGLSEGPSPDPSVLNLSYKLFQGSHVPDIVHNIRPLKAVNIPLPKNLQA---GYIFLLDLGTHILRILSSESCALCLVIGDLTDRQAKIDA
        ++L  S+ P PDP  L+LSY+LFQGSHVPDI H++ P     +    +      G+    +L + IL  L+++S +L  VI  +++R+ +ID+
Subjt:  SVLGLSEGPSPDPSVLNLSYKLFQGSHVPDIVHNIRPLKAVNIPLPKNLQA---GYIFLLDLGTHILRILSSESCALCLVIGDLTDRQAKIDA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGTTTTGCGTGCTTTTTCCCGAGAAGGAAGTGTTTTGGTGAAAGCTGTTGGCGTCGCAGTGCTCCGATGTCCAAGTGCCACGACGCCGAACCAAAGCGTC
ACGACACCTTCTCTCTGTGTTCGACCCGACCTTGCCACTACTACTGTTAGCATTGGTAGGCAAAGTTCTAAGGAAGGGTCAATTGACATATCCAGGCTCCCTATG
CTCCAGGATGTTATCCTTGTAGAAGGCCTTACTGCCAACCTCATCAATATTAATCAACTATGTGATCAGGGGTTGTTTGTTAAATTCTCAAAAGAGACATGTATT
GTTTCTAACAAGGATAATAGTACTATCATAACTGATGAAGCCTCTCTCTGGCAAAGGAGACTCAGTCATGTTGAAACCTTAAATACTGCTTGCCATATTCATAAT
CGAATCTCATTGAGACCTGGTACTGCAAAGACCAACTATAAGCTATGGAGTGGGAGGAAGCTTAACATCAGATACGTAGATGTTGAAAGTGTTGATGAAAGCTTG
TATAGAAGCATGATAGGTAGTTTGTTGTATTTGACGACGAGTCATCTTGATATAGGCTATGCTGTTGTGAGAACCCGCTGCATTGTACCTTGGATTGATCCTTAT
ACTCAAATATCTTCTCCTACTGTGCCTACTGTTGATAGAAATCCTTCTGTAGATGAAGCCATGGTTGTAAGACTGGACAATTACTTTGACAATCCCCAATCTACT
TCTTTTTATAATGCTTTCGAACCTACGATTGTGACCTCTGCTTTCTCTGAGTCTGTGGATGATGATATCCCCATAGGTCAGTTAAGAAATCCTCAGAGGCAGTCA
TCTCGCTTGCAAGTTAAAGGCAGTAGTCCTTCTGGTTGTTCTAGCTCTCGCCCTTCAAGTTCCTCCGATTTTGAGCACATTTCCTTGTCTAGCTTTGAAAATGAT
ATTGTTGTTAGAACCTCATCCTTCCATTACGAATCTTGTGTGGAGCTGACTGGCGATACTAAGTCTTCTTGGCCTTCATCTGGGCAATTACCTGCTGCTGCCCTC
AGTGTGAAATATGTTGTCCTTCACAAGATTGGTATTGCTAACTTGTGCCCCTCGACTCATGGATCTAGCGCGTCTTCTACTTTGGTTAGTTTACTGTATCAGATT
TTTACTTGCCCTACCTTCAATTTTGGTGTGTTTGTGTTCAACCAGTTATTGCGACATGTGGATTCCTTTGCCATCAAGCTTCCCATCTGCTTTCCCTGTTTATTG
TCTGGCTTTTTGATTGCTCAATGTCCCTCTGTTCTTGGCCTTAGTGAAGGTCCTAGTCCTGATCCTTCAGTTCTTAATCTCAGCTACAAGTTGTTCCAGGGATCT
CATGTGCCGGACATTGTGCACAACATTCGTCCCTTGAAGGCTGTTAATATTCCTTTGCCCAAAAACCTTCAGGCGGGTTACATATTTCTATTGGACTTGGGCACG
CATATCCTTCGCATTCTTTCCTCTGAATCTTGTGCCCTGTGTTTAGTTATTGGAGACCTGACAGACCGTCAAGCTAAAATTGATGCTCCTTGTTCATCTCCTCAA
TTTGTTTATGTCTCCCTCCGATGGAGCCTCTACGTCTCAAGGACTTGCTTAATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGTTTTGCGTGCTTTTTCCCGAGAAGGAAGTGTTTTGGTGAAAGCTGTTGGCGTCGCAGTGCTCCGATGTCCAAGTGCCACGACGCCGAACCAAAGCGTC
ACGACACCTTCTCTCTGTGTTCGACCCGACCTTGCCACTACTACTGTTAGCATTGGTAGGCAAAGTTCTAAGGAAGGGTCAATTGACATATCCAGGCTCCCTATG
CTCCAGGATGTTATCCTTGTAGAAGGCCTTACTGCCAACCTCATCAATATTAATCAACTATGTGATCAGGGGTTGTTTGTTAAATTCTCAAAAGAGACATGTATT
GTTTCTAACAAGGATAATAGTACTATCATAACTGATGAAGCCTCTCTCTGGCAAAGGAGACTCAGTCATGTTGAAACCTTAAATACTGCTTGCCATATTCATAAT
CGAATCTCATTGAGACCTGGTACTGCAAAGACCAACTATAAGCTATGGAGTGGGAGGAAGCTTAACATCAGATACGTAGATGTTGAAAGTGTTGATGAAAGCTTG
TATAGAAGCATGATAGGTAGTTTGTTGTATTTGACGACGAGTCATCTTGATATAGGCTATGCTGTTGTGAGAACCCGCTGCATTGTACCTTGGATTGATCCTTAT
ACTCAAATATCTTCTCCTACTGTGCCTACTGTTGATAGAAATCCTTCTGTAGATGAAGCCATGGTTGTAAGACTGGACAATTACTTTGACAATCCCCAATCTACT
TCTTTTTATAATGCTTTCGAACCTACGATTGTGACCTCTGCTTTCTCTGAGTCTGTGGATGATGATATCCCCATAGGTCAGTTAAGAAATCCTCAGAGGCAGTCA
TCTCGCTTGCAAGTTAAAGGCAGTAGTCCTTCTGGTTGTTCTAGCTCTCGCCCTTCAAGTTCCTCCGATTTTGAGCACATTTCCTTGTCTAGCTTTGAAAATGAT
ATTGTTGTTAGAACCTCATCCTTCCATTACGAATCTTGTGTGGAGCTGACTGGCGATACTAAGTCTTCTTGGCCTTCATCTGGGCAATTACCTGCTGCTGCCCTC
AGTGTGAAATATGTTGTCCTTCACAAGATTGGTATTGCTAACTTGTGCCCCTCGACTCATGGATCTAGCGCGTCTTCTACTTTGGTTAGTTTACTGTATCAGATT
TTTACTTGCCCTACCTTCAATTTTGGTGTGTTTGTGTTCAACCAGTTATTGCGACATGTGGATTCCTTTGCCATCAAGCTTCCCATCTGCTTTCCCTGTTTATTG
TCTGGCTTTTTGATTGCTCAATGTCCCTCTGTTCTTGGCCTTAGTGAAGGTCCTAGTCCTGATCCTTCAGTTCTTAATCTCAGCTACAAGTTGTTCCAGGGATCT
CATGTGCCGGACATTGTGCACAACATTCGTCCCTTGAAGGCTGTTAATATTCCTTTGCCCAAAAACCTTCAGGCGGGTTACATATTTCTATTGGACTTGGGCACG
CATATCCTTCGCATTCTTTCCTCTGAATCTTGTGCCCTGTGTTTAGTTATTGGAGACCTGACAGACCGTCAAGCTAAAATTGATGCTCCTTGTTCATCTCCTCAA
TTTGTTTATGTCTCCCTCCGATGGAGCCTCTACGTCTCAAGGACTTGCTTAATCTGA
Protein sequenceShow/hide protein sequence
MTVLRAFSREGSVLVKAVGVAVLRCPSATTPNQSVTTPSLCVRPDLATTTVSIGRQSSKEGSIDISRLPMLQDVILVEGLTANLININQLCDQGLFVKFSKETCI
VSNKDNSTIITDEASLWQRRLSHVETLNTACHIHNRISLRPGTAKTNYKLWSGRKLNIRYVDVESVDESLYRSMIGSLLYLTTSHLDIGYAVVRTRCIVPWIDPY
TQISSPTVPTVDRNPSVDEAMVVRLDNYFDNPQSTSFYNAFEPTIVTSAFSESVDDDIPIGQLRNPQRQSSRLQVKGSSPSGCSSSRPSSSSDFEHISLSSFEND
IVVRTSSFHYESCVELTGDTKSSWPSSGQLPAAALSVKYVVLHKIGIANLCPSTHGSSASSTLVSLLYQIFTCPTFNFGVFVFNQLLRHVDSFAIKLPICFPCLL
SGFLIAQCPSVLGLSEGPSPDPSVLNLSYKLFQGSHVPDIVHNIRPLKAVNIPLPKNLQAGYIFLLDLGTHILRILSSESCALCLVIGDLTDRQAKIDAPCSSPQ
FVYVSLRWSLYVSRTCLI