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Clc10G12380 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc10G12380
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
Genome locationClcChr10:25959805..25967402
RNA-Seq ExpressionClc10G12380
SyntenyClc10G12380
Gene Ontology termsGO:0005743 - mitochondrial inner membrane (cellular component)
GO:0070469 - respirasome (cellular component)
InterPro domainsIPR007741 - Ribosomal protein/NADH dehydrogenase domain
IPR016464 - NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 2
IPR036249 - Thioredoxin-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF9859330.1 hypothetical protein H0E87_029350 [Populus deltoides]4.6e-3659.73Show/hide
Query:  MAWRGQLSKNLKELRILLCQSSPSSAPTRAFVEKNYKDLKTLNPKFPILIRECSGVEPQLWARYGISMPSPTQMISFRFIFFALGFE-ILPSFDVLFAAI
        MAWRGQLSKNLKELRILLCQSSPSS+ TR F+E++YKDLKTLNPK PILIREC+G+EPQLWARYGI +             F+L    +L  F +     
Subjt:  MAWRGQLSKNLKELRILLCQSSPSSAPTRAFVEKNYKDLKTLNPKFPILIRECSGVEPQLWARYGISMPSPTQMISFRFIFFALGFE-ILPSFDVLFAAI

Query:  LELIDKREVTSN--NLLGDMGIERVARLEGLSEAQISKALEDLVKVGAS
        +EL+D    +++  +   D G+ER  RLEGLSEAQISKALE+L KVGAS
Subjt:  LELIDKREVTSN--NLLGDMGIERVARLEGLSEAQISKALEDLVKVGAS

XP_004141152.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis sativus]2.0e-3663.01Show/hide
Query:  MAWRGQLSKNLKELRILLCQSSPSSAPTRAFVEKNYKDLKTLNPKFPILIRECSGVEPQLWARYGISMPSPTQMISFRFIFFALGFEILPSFDVLFAAIL
        MAWRG+LSKNLKELRILLCQSSPSSAP RAFVEKNYKDLKTLNPKFPILIRECSG+EPQLWARY                                    
Subjt:  MAWRGQLSKNLKELRILLCQSSPSSAPTRAFVEKNYKDLKTLNPKFPILIRECSGVEPQLWARYGISMPSPTQMISFRFIFFALGFEILPSFDVLFAAIL

Query:  ELIDKREVTSNNLLGDMGIERVARLEGLSEAQISKALEDLVKVGAS
                       DMGIERVARLEGLSEAQISKALEDLVKVGAS
Subjt:  ELIDKREVTSNNLLGDMGIERVARLEGLSEAQISKALEDLVKVGAS

XP_008465169.1 PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis melo]7.0e-3763.7Show/hide
Query:  MAWRGQLSKNLKELRILLCQSSPSSAPTRAFVEKNYKDLKTLNPKFPILIRECSGVEPQLWARYGISMPSPTQMISFRFIFFALGFEILPSFDVLFAAIL
        MAWRGQLSKNLKELRILLCQSSPSSAP RAFVEKNYKDLKTLNPKFPILIRECSG+EPQLWARY                                    
Subjt:  MAWRGQLSKNLKELRILLCQSSPSSAPTRAFVEKNYKDLKTLNPKFPILIRECSGVEPQLWARYGISMPSPTQMISFRFIFFALGFEILPSFDVLFAAIL

Query:  ELIDKREVTSNNLLGDMGIERVARLEGLSEAQISKALEDLVKVGAS
                       DMGIERVARLEGLSEAQISKALEDLVKVGAS
Subjt:  ELIDKREVTSNNLLGDMGIERVARLEGLSEAQISKALEDLVKVGAS

XP_022935669.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2-like [Cucurbita moschata]3.5e-3663.01Show/hide
Query:  MAWRGQLSKNLKELRILLCQSSPSSAPTRAFVEKNYKDLKTLNPKFPILIRECSGVEPQLWARYGISMPSPTQMISFRFIFFALGFEILPSFDVLFAAIL
        MAWRGQLSKNLKELRILLCQ+SPSSAP RAFVEKNYK+LKTLNPKFPILIRECSGVEPQLWARY                                    
Subjt:  MAWRGQLSKNLKELRILLCQSSPSSAPTRAFVEKNYKDLKTLNPKFPILIRECSGVEPQLWARYGISMPSPTQMISFRFIFFALGFEILPSFDVLFAAIL

Query:  ELIDKREVTSNNLLGDMGIERVARLEGLSEAQISKALEDLVKVGAS
                       DMGIERVARLEGLSEAQISKALEDLVKVGAS
Subjt:  ELIDKREVTSNNLLGDMGIERVARLEGLSEAQISKALEDLVKVGAS

XP_038906356.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Benincasa hispida]2.0e-3663.01Show/hide
Query:  MAWRGQLSKNLKELRILLCQSSPSSAPTRAFVEKNYKDLKTLNPKFPILIRECSGVEPQLWARYGISMPSPTQMISFRFIFFALGFEILPSFDVLFAAIL
        MAWRGQLSKNLKELRILLCQSSPSSAP R FVEKNYKDLKTLNPKFPILIRECSGVEPQLWARY                                    
Subjt:  MAWRGQLSKNLKELRILLCQSSPSSAPTRAFVEKNYKDLKTLNPKFPILIRECSGVEPQLWARYGISMPSPTQMISFRFIFFALGFEILPSFDVLFAAIL

Query:  ELIDKREVTSNNLLGDMGIERVARLEGLSEAQISKALEDLVKVGAS
                       DMG+ERVARLEGLSEAQISKALEDLVKVGAS
Subjt:  ELIDKREVTSNNLLGDMGIERVARLEGLSEAQISKALEDLVKVGAS

TrEMBL top hitse value%identityAlignment
A0A0A0LDA2 L51_S25_CI-B8 domain-containing protein9.9e-3763.01Show/hide
Query:  MAWRGQLSKNLKELRILLCQSSPSSAPTRAFVEKNYKDLKTLNPKFPILIRECSGVEPQLWARYGISMPSPTQMISFRFIFFALGFEILPSFDVLFAAIL
        MAWRG+LSKNLKELRILLCQSSPSSAP RAFVEKNYKDLKTLNPKFPILIRECSG+EPQLWARY                                    
Subjt:  MAWRGQLSKNLKELRILLCQSSPSSAPTRAFVEKNYKDLKTLNPKFPILIRECSGVEPQLWARYGISMPSPTQMISFRFIFFALGFEILPSFDVLFAAIL

Query:  ELIDKREVTSNNLLGDMGIERVARLEGLSEAQISKALEDLVKVGAS
                       DMGIERVARLEGLSEAQISKALEDLVKVGAS
Subjt:  ELIDKREVTSNNLLGDMGIERVARLEGLSEAQISKALEDLVKVGAS

A0A1S3CN67 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 23.4e-3763.7Show/hide
Query:  MAWRGQLSKNLKELRILLCQSSPSSAPTRAFVEKNYKDLKTLNPKFPILIRECSGVEPQLWARYGISMPSPTQMISFRFIFFALGFEILPSFDVLFAAIL
        MAWRGQLSKNLKELRILLCQSSPSSAP RAFVEKNYKDLKTLNPKFPILIRECSG+EPQLWARY                                    
Subjt:  MAWRGQLSKNLKELRILLCQSSPSSAPTRAFVEKNYKDLKTLNPKFPILIRECSGVEPQLWARYGISMPSPTQMISFRFIFFALGFEILPSFDVLFAAIL

Query:  ELIDKREVTSNNLLGDMGIERVARLEGLSEAQISKALEDLVKVGAS
                       DMGIERVARLEGLSEAQISKALEDLVKVGAS
Subjt:  ELIDKREVTSNNLLGDMGIERVARLEGLSEAQISKALEDLVKVGAS

A0A5A7T2I6 NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex subunit 23.4e-3763.7Show/hide
Query:  MAWRGQLSKNLKELRILLCQSSPSSAPTRAFVEKNYKDLKTLNPKFPILIRECSGVEPQLWARYGISMPSPTQMISFRFIFFALGFEILPSFDVLFAAIL
        MAWRGQLSKNLKELRILLCQSSPSSAP RAFVEKNYKDLKTLNPKFPILIRECSG+EPQLWARY                                    
Subjt:  MAWRGQLSKNLKELRILLCQSSPSSAPTRAFVEKNYKDLKTLNPKFPILIRECSGVEPQLWARYGISMPSPTQMISFRFIFFALGFEILPSFDVLFAAIL

Query:  ELIDKREVTSNNLLGDMGIERVARLEGLSEAQISKALEDLVKVGAS
                       DMGIERVARLEGLSEAQISKALEDLVKVGAS
Subjt:  ELIDKREVTSNNLLGDMGIERVARLEGLSEAQISKALEDLVKVGAS

A0A6J1F628 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2-like1.7e-3663.01Show/hide
Query:  MAWRGQLSKNLKELRILLCQSSPSSAPTRAFVEKNYKDLKTLNPKFPILIRECSGVEPQLWARYGISMPSPTQMISFRFIFFALGFEILPSFDVLFAAIL
        MAWRGQLSKNLKELRILLCQ+SPSSAP RAFVEKNYK+LKTLNPKFPILIRECSGVEPQLWARY                                    
Subjt:  MAWRGQLSKNLKELRILLCQSSPSSAPTRAFVEKNYKDLKTLNPKFPILIRECSGVEPQLWARYGISMPSPTQMISFRFIFFALGFEILPSFDVLFAAIL

Query:  ELIDKREVTSNNLLGDMGIERVARLEGLSEAQISKALEDLVKVGAS
                       DMGIERVARLEGLSEAQISKALEDLVKVGAS
Subjt:  ELIDKREVTSNNLLGDMGIERVARLEGLSEAQISKALEDLVKVGAS

A0A6J1J6D3 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2-like8.4e-3662.33Show/hide
Query:  MAWRGQLSKNLKELRILLCQSSPSSAPTRAFVEKNYKDLKTLNPKFPILIRECSGVEPQLWARYGISMPSPTQMISFRFIFFALGFEILPSFDVLFAAIL
        MAWRGQLSKNLKELRILLCQ+SPSSAP RAFVEKNYK+LKTLNPKFPILIRECSGVEPQLWARY                                    
Subjt:  MAWRGQLSKNLKELRILLCQSSPSSAPTRAFVEKNYKDLKTLNPKFPILIRECSGVEPQLWARYGISMPSPTQMISFRFIFFALGFEILPSFDVLFAAIL

Query:  ELIDKREVTSNNLLGDMGIERVARLEGLSEAQISKALEDLVKVGAS
                       DMGIERVARLEGLSEAQI KALEDLVKVGAS
Subjt:  ELIDKREVTSNNLLGDMGIERVARLEGLSEAQISKALEDLVKVGAS

SwissProt top hitse value%identityAlignment
O43678 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 21.1e-1352.24Show/hide
Query:  LKELRILLCQSSPSSAPTRAFVEKNYKDLKTLNPKFPILIRECSGVEPQLWARYGISMPSPTQMISF
        L+E+RI LCQ SP S   R F+EK Y +LK  NP  PILIRECS V+P+LWARY     +   + +F
Subjt:  LKELRILLCQSSPSSAPTRAFVEKNYKDLKTLNPKFPILIRECSGVEPQLWARYGISMPSPTQMISF

P0CB79 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 21.5e-1352.24Show/hide
Query:  LKELRILLCQSSPSSAPTRAFVEKNYKDLKTLNPKFPILIRECSGVEPQLWARYGISMPSPTQMISF
        L+E+RI LCQ SP S   R F+EK Y +LK  NP  PILIRECS V+P+LWARY         + +F
Subjt:  LKELRILLCQSSPSSAPTRAFVEKNYKDLKTLNPKFPILIRECSGVEPQLWARYGISMPSPTQMISF

Q02370 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 25.1e-1451.35Show/hide
Query:  RGQLSKNLKELRILLCQSSPSSAPTRAFVEKNYKDLKTLNPKFPILIRECSGVEPQLWARYGISMPSPTQMISF
        RG+L   L+E+RI LCQ SP S   R F+EK Y +LK  NP  PILIRECS V+P+LWARY         + +F
Subjt:  RGQLSKNLKELRILLCQSSPSSAPTRAFVEKNYKDLKTLNPKFPILIRECSGVEPQLWARYGISMPSPTQMISF

Q4R5E2 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 21.5e-1352.24Show/hide
Query:  LKELRILLCQSSPSSAPTRAFVEKNYKDLKTLNPKFPILIRECSGVEPQLWARYGISMPSPTQMISF
        L+E+RI LCQ SP S   R F+EK Y +LK  NP  PILIRECS V+P+LWARY         + +F
Subjt:  LKELRILLCQSSPSSAPTRAFVEKNYKDLKTLNPKFPILIRECSGVEPQLWARYGISMPSPTQMISF

Q9FIJ2 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 26.0e-3150.68Show/hide
Query:  MAWRGQLSKNLKELRILLCQSSPSSAPTRAFVEKNYKDLKTLNPKFPILIRECSGVEPQLWARYGISMPSPTQMISFRFIFFALGFEILPSFDVLFAAIL
        MAWRG +SK++KELRILLCQSSP+SAPTR FVEKNYKDLK+LNPK PILIRECSGV+PQ+WARY                                    
Subjt:  MAWRGQLSKNLKELRILLCQSSPSSAPTRAFVEKNYKDLKTLNPKFPILIRECSGVEPQLWARYGISMPSPTQMISFRFIFFALGFEILPSFDVLFAAIL

Query:  ELIDKREVTSNNLLGDMGIERVARLEGLSEAQISKALEDLVKVGAS
                       DMG+ER   L+GL+E QI KALE+LVK GA+
Subjt:  ELIDKREVTSNNLLGDMGIERVARLEGLSEAQISKALEDLVKVGAS

Arabidopsis top hitse value%identityAlignment
AT5G47890.1 NADH-ubiquinone oxidoreductase B8 subunit, putative4.3e-3250.68Show/hide
Query:  MAWRGQLSKNLKELRILLCQSSPSSAPTRAFVEKNYKDLKTLNPKFPILIRECSGVEPQLWARYGISMPSPTQMISFRFIFFALGFEILPSFDVLFAAIL
        MAWRG +SK++KELRILLCQSSP+SAPTR FVEKNYKDLK+LNPK PILIRECSGV+PQ+WARY                                    
Subjt:  MAWRGQLSKNLKELRILLCQSSPSSAPTRAFVEKNYKDLKTLNPKFPILIRECSGVEPQLWARYGISMPSPTQMISFRFIFFALGFEILPSFDVLFAAIL

Query:  ELIDKREVTSNNLLGDMGIERVARLEGLSEAQISKALEDLVKVGAS
                       DMG+ER   L+GL+E QI KALE+LVK GA+
Subjt:  ELIDKREVTSNNLLGDMGIERVARLEGLSEAQISKALEDLVKVGAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATGGAGAGGACAGCTATCCAAGAATTTGAAGGAGCTTCGAATCTTGCTCTGCCAATCCTCTCCTTCAAGCGCCCCCACTAGGGCATTTGTGGAAAAGAATTACAA
GGACCTCAAGACTTTGAATCCCAAATTTCCAATATTGATCCGCGAATGCAGTGGAGTCGAGCCGCAATTATGGGCTAGATATGGTATTTCAATGCCCTCTCCTACTCAAA
TGATTTCATTTCGTTTTATTTTCTTCGCTCTAGGTTTCGAGATTCTTCCGAGCTTTGATGTTTTATTTGCTGCTATACTGGAATTGATTGATAAGCGCGAGGTGACGTCA
AATAATTTGCTGGGTGACATGGGCATTGAGAGGGTTGCTCGTCTTGAGGGTTTAAGTGAGGCACAGATCTCGAAGGCGCTCGAAGACCTAGTCAAAGTTGGGGCATCCTG
A
mRNA sequenceShow/hide mRNA sequence
CAAAAATTTCCTCGTTACTTAGCATCGGCGAAGGCTCCATTGTCTTTTGGGAAGGTCCGGGTTCATTCATCTGAGGTACAGAGACTTCACTCCATTCACGAACAGCGAGA
GAGGTTGAAATGGCATGGAGAGGACAGCTATCCAAGAATTTGAAGGAGCTTCGAATCTTGCTCTGCCAATCCTCTCCTTCAAGCGCCCCCACTAGGGCATTTGTGGAAAA
GAATTACAAGGACCTCAAGACTTTGAATCCCAAATTTCCAATATTGATCCGCGAATGCAGTGGAGTCGAGCCGCAATTATGGGCTAGATATGGTATTTCAATGCCCTCTC
CTACTCAAATGATTTCATTTCGTTTTATTTTCTTCGCTCTAGGTTTCGAGATTCTTCCGAGCTTTGATGTTTTATTTGCTGCTATACTGGAATTGATTGATAAGCGCGAG
GTGACGTCAAATAATTTGCTGGGTGACATGGGCATTGAGAGGGTTGCTCGTCTTGAGGGTTTAAGTGAGGCACAGATCTCGAAGGCGCTCGAAGACCTAGTCAAAGTTGG
GGCATCCTGAAGGAGTAATCTGCTGTGCTATTGTTACTTGCAATAGACGTTAATAAATGCACAAGTGGAACTTTTGTTGAGATGCTTTTCTGTTTACATTCTCTTCGCTC
AGCTTTTTTTGAGATTATAGCTCAAATATTCGTCTTGACAAATCGTGTTTCTGGTACGTATGCTTATTTGTTTATATGAATAGTTTCTCCGGGAGTTGTCATAATAGATA
CTCCTTGCAATGAGAGATTAGATTGAAAAAATATTAAAACATGAGAGAATAAATGGATACTTTTT
Protein sequenceShow/hide protein sequence
MAWRGQLSKNLKELRILLCQSSPSSAPTRAFVEKNYKDLKTLNPKFPILIRECSGVEPQLWARYGISMPSPTQMISFRFIFFALGFEILPSFDVLFAAILELIDKREVTS
NNLLGDMGIERVARLEGLSEAQISKALEDLVKVGAS