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Clc10G12445 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc10G12445
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionDNA-directed RNA polymerase subunit
Genome locationClcChr10:26024252..26039078
RNA-Seq ExpressionClc10G12445
SyntenyClc10G12445
Gene Ontology termsGO:0006386 - termination of RNA polymerase III transcription (biological process)
GO:0042779 - tRNA 3'-trailer cleavage (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001222 - Zinc finger, TFIIS-type
IPR001529 - DNA-directed RNA polymerase, M/15kDa subunit
IPR012164 - DNA-directed RNA polymerase subunit/transcription factor S
IPR019761 - DNA-directed RNA polymerase M, 15kDa subunit, conserved site
IPR029401 - Nudix hydrolase, N-terminal
IPR034014 - Pol III subunit C11, C-terminal zinc ribbon


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597716.1 DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma subsp. sororia]2.3e-5857.83Show/hide
Query:  MNEEQQDQMNHDMKHSKDGENTSSHHSHSATVDSAAFTVYYSTTATSTWEKPGSRLGLFSANIGRIRVDIGEVTLIEEVDCIARLKGRVCCTFGRRLPLF
        MNEEQQDQMN+DM+HSKDG+N                                           R+R                    R   +FGR     
Subjt:  MNEEQQDQMNHDMKHSKDGENTSSHHSHSATVDSAAFTVYYSTTATSTWEKPGSRLGLFSANIGRIRVDIGEVTLIEEVDCIARLKGRVCCTFGRRLPLF

Query:  FLYHGCRRSNDPWGSLILQMEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAF
                    W     +MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAF
Subjt:  FLYHGCRRSNDPWGSLILQMEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAF

Query:  IQIQLRSADEPATTFYKCMNENCRHNWRED
        IQIQLRSADEPA+TFYKCMNE+CR NWRED
Subjt:  IQIQLRSADEPATTFYKCMNENCRHNWRED

KAG7029162.1 DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma subsp. argyrosperma]7.9e-5996.43Show/hide
Query:  QMEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKC
        +MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPA+TFYKC
Subjt:  QMEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKC

Query:  MNENCRHNWRED
        MNE+CR NWRED
Subjt:  MNENCRHNWRED

XP_004141147.1 DNA-directed RNA polymerase III subunit RPC10 [Cucumis sativus]6.0e-5998.2Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNC FGKAAFIQIQLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRHNWRED
        NENCR NWRED
Subjt:  NENCRHNWRED

XP_022932603.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita moschata]1.3e-5897.3Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPA+TFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRHNWRED
        NE+CR NWRED
Subjt:  NENCRHNWRED

XP_038903069.1 DNA-directed RNA polymerase III subunit RPC10-like [Benincasa hispida]7.1e-6099.1Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNC FGKAAFIQIQLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRHNWRED
        NENCRHNWRED
Subjt:  NENCRHNWRED

TrEMBL top hitse value%identityAlignment
A0A0A0LCM4 DNA-directed RNA polymerase subunit2.9e-5998.2Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNC FGKAAFIQIQLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRHNWRED
        NENCR NWRED
Subjt:  NENCRHNWRED

A0A1S3CQ50 DNA-directed RNA polymerase subunit2.9e-5998.2Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNC FGKAAFIQIQLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRHNWRED
        NENCR NWRED
Subjt:  NENCRHNWRED

A0A6J1DDT5 DNA-directed RNA polymerase subunit9.4e-5894.59Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYV +LENRVKIKRKQHL+KKELEPIISDDDMK AAQTEATCPNC FGKAAFIQ+QLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRHNWRED
        NENCRHNWRED
Subjt:  NENCRHNWRED

A0A6J1EXG3 DNA-directed RNA polymerase subunit6.5e-5997.3Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPA+TFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRHNWRED
        NE+CR NWRED
Subjt:  NENCRHNWRED

A0A6J1IB59 DNA-directed RNA polymerase subunit6.5e-5997.3Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPA+TFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRHNWRED
        NE+CR NWRED
Subjt:  NENCRHNWRED

SwissProt top hitse value%identityAlignment
O13896 DNA-directed RNA polymerase III subunit RPC101.5e-1537.72Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD-MKNAAQTEATCPN--CGFGKAAFIQIQLRSADEPATTFY
        M+FCPTCGN L   +   G+++ F C TCPY  +      +  +    +KE++ ++  ++  ++  QTE TC N  C   +A F Q+Q+RSADEP +TFY
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD-MKNAAQTEATCPN--CGFGKAAFIQIQLRSADEPATTFY

Query:  KCMNENCRHNWRED
        +C    C+  WRE+
Subjt:  KCMNENCRHNWRED

Q04307 DNA-directed RNA polymerase III subunit RPC102.3e-1640.35Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPN---CGFGKAAFIQIQLRSADEPATTFY
        + FCP+C NML     + G  +   C +CPY   +E  ++I  ++ L +KE++ ++      N  QT+  CPN   CG   A F Q+Q+RSADEP TTFY
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPN---CGFGKAAFIQIQLRSADEPATTFY

Query:  KCMNENCRHNWRED
        KC+  NC H W+E+
Subjt:  KCMNENCRHNWRED

Q2M2S7 DNA-directed RNA polymerase III subunit RPC103.8e-1641.67Show/hide
Query:  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCMNE
        FCP CGN L  E     +  RF C TCPYV  +  +V   RK   +K+  + +      +N   T   CP C   +A F+Q+Q R ADEP TTFYKC N 
Subjt:  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCMNE

Query:  NCRHNWRE
         C H WR+
Subjt:  NCRHNWRE

Q9CQZ7 DNA-directed RNA polymerase III subunit RPC104.5e-1742.2Show/hide
Query:  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISD-DDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCMN
        FCP CGN L  E     +  RF C TCPYV  +  +V  ++   L  KE++ ++      +N   T   CP C   +A F+Q+Q RSADEP TTFYKC N
Subjt:  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISD-DDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCMN

Query:  ENCRHNWRE
          C H WR+
Subjt:  ENCRHNWRE

Q9Y2Y1 DNA-directed RNA polymerase III subunit RPC102.7e-1742.2Show/hide
Query:  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISD-DDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCMN
        FCP CGN L  E     +  RF C TCPYV  +  +V  ++   L  KE++ ++      +N   T  +CP C   +A F+Q+Q RSADEP TTFYKC N
Subjt:  FCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISD-DDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCMN

Query:  ENCRHNWRE
          C H WR+
Subjt:  ENCRHNWRE

Arabidopsis top hitse value%identityAlignment
AT1G01210.1 DNA-directed RNA polymerase, subunit M, archaeal4.6e-3354.95Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGN+L++E    G +SRFFC TCPYV+Y++ +V+IK+KQ LVKK +E +++ DD+  AA+TEA CP CG  KA F  +Q+RSADEP + FY+C+
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRHNWRED
           C   WRE+
Subjt:  NENCRHNWRED

AT2G38560.1 transcript elongation factor IIS1.2e-0441.3Show/hide
Query:  AAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWR
        A+  +  C  CG  K  + Q+Q RSADEP TT+  C+  NC ++W+
Subjt:  AAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWR

AT4G07950.1 DNA-directed RNA polymerase, subunit M, archaeal4.2e-3457.66Show/hide
Query:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGN+L++E    G SSRFFC TCPYV+ +E RV+IK+KQ LVKK +EP+++ DD+  AA+TEA CP CG  KA F  +Q+RSADEP + FY+C+
Subjt:  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADEPATTFYKCM

Query:  NENCRHNWRED
           C   WRE+
Subjt:  NENCRHNWRED


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACGAAGAACAGCAAGATCAAATGAATCATGATATGAAGCATTCGAAAGATGGAGAAAATACGTCGTCACATCACTCCCACTCAGCCACCGTCGATTCAGCC
GCCTTTACTGTCTACTACTCAACCACTGCGACGTCGACGTGGGAGAAGCCAGGAAGCAGGCTCGGCCTCTTCTCTGCTAACATCGGCAGAATCCGCGTCGACATC
GGAGAAGTGACGCTCATCGAGGAAGTCGATTGCATCGCCAGGCTTAAAGGGCGAGTGTGCTGTACTTTCGGGCGGCGCCTTCCTCTCTTTTTTCTCTATCACGGT
TGTCGGAGAAGTAACGATCCTTGGGGAAGTCTGATTTTGCAAATGGAGTTTTGCCCGACTTGTGGGAACATGTTGCAATTTGAGTTGCCTAATATGGGTAAATCT
TCCAGATTCTTCTGCCCGACTTGTCCATATGTGTCCTACTTGGAGAACAGGGTAAAAATCAAAAGAAAGCAACATTTGGTAAAAAAGGAATTAGAACCCATAATC
TCTGATGATGACATGAAAAATGCAGCTCAAACAGAAGCAACATGTCCAAATTGTGGGTTTGGCAAGGCTGCTTTTATACAAATACAACTGAGATCAGCTGATGAA
CCTGCTACAACATTTTACAAGTGCATGAACGAAAACTGTAGGCATAACTGGCGCGAGGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGAACGAAGAACAGCAAGATCAAATGAATCATGATATGAAGCATTCGAAAGATGGAGAAAATACGTCGTCACATCACTCCCACTCAGCCACCGTCGATTCAGCC
GCCTTTACTGTCTACTACTCAACCACTGCGACGTCGACGTGGGAGAAGCCAGGAAGCAGGCTCGGCCTCTTCTCTGCTAACATCGGCAGAATCCGCGTCGACATC
GGAGAAGTGACGCTCATCGAGGAAGTCGATTGCATCGCCAGGCTTAAAGGGCGAGTGTGCTGTACTTTCGGGCGGCGCCTTCCTCTCTTTTTTCTCTATCACGGT
TGTCGGAGAAGTAACGATCCTTGGGGAAGTCTGATTTTGCAAATGGAGTTTTGCCCGACTTGTGGGAACATGTTGCAATTTGAGTTGCCTAATATGGGTAAATCT
TCCAGATTCTTCTGCCCGACTTGTCCATATGTGTCCTACTTGGAGAACAGGGTAAAAATCAAAAGAAAGCAACATTTGGTAAAAAAGGAATTAGAACCCATAATC
TCTGATGATGACATGAAAAATGCAGCTCAAACAGAAGCAACATGTCCAAATTGTGGGTTTGGCAAGGCTGCTTTTATACAAATACAACTGAGATCAGCTGATGAA
CCTGCTACAACATTTTACAAGTGCATGAACGAAAACTGTAGGCATAACTGGCGCGAGGATTAAGGGCCAAGTTTTTAACTACTCATTTTCTATTTTTTATTTTAT
TTAAAGTCATTTAGAAGTAATTTCTATGAATAAAATATATTTTTTAAACCTGAATAGCATTATAATTTATGAATCATGATGGCACTTCAGAATGAGAATCATGTC
ATAATTGTATTTCG
Protein sequenceShow/hide protein sequence
MNEEQQDQMNHDMKHSKDGENTSSHHSHSATVDSAAFTVYYSTTATSTWEKPGSRLGLFSANIGRIRVDIGEVTLIEEVDCIARLKGRVCCTFGRRLPLFFLYHG
CRRSNDPWGSLILQMEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCGFGKAAFIQIQLRSADE
PATTFYKCMNENCRHNWRED