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Clc10G13060 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc10G13060
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPentatricopeptide repeat-containing protein
Genome locationClcChr10:26634392..26634608
RNA-Seq ExpressionClc10G13060
SyntenyClc10G13060
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581055.1 putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]2.3e-1472.31Show/hide
Query:  MTSKSMGTFNTMMLNNINPD-VAIVKILTSCSALGILQQALCLHDYFVKTGFTVMSFDHRAVFEM
        M+SKSMGTFNTM+LNNI PD VAIVKIL SCS LGILQQALCLHDY VK+GFT   F   ++ E+
Subjt:  MTSKSMGTFNTMMLNNINPD-VAIVKILTSCSALGILQQALCLHDYFVKTGFTVMSFDHRAVFEM
KAG7017786.1 putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]2.3e-1472.31Show/hide
Query:  MTSKSMGTFNTMMLNNINPD-VAIVKILTSCSALGILQQALCLHDYFVKTGFTVMSFDHRAVFEM
        M+SKSMGTFNTM+LNNI PD VAIVKIL SCS LGILQQALCLHDY VK+GFT   F   ++ E+
Subjt:  MTSKSMGTFNTMMLNNINPD-VAIVKILTSCSALGILQQALCLHDYFVKTGFTVMSFDHRAVFEM
XP_022935091.1 putative pentatricopeptide repeat-containing protein At3g01580 isoform X1 [Cucurbita moschata]2.3e-1472.31Show/hide
Query:  MTSKSMGTFNTMMLNNINPD-VAIVKILTSCSALGILQQALCLHDYFVKTGFTVMSFDHRAVFEM
        M+SKSMGTFNTM+LNNI PD VAIVKIL SCS LGILQQALCLHDY VK+GFT   F   ++ E+
Subjt:  MTSKSMGTFNTMMLNNINPD-VAIVKILTSCSALGILQQALCLHDYFVKTGFTVMSFDHRAVFEM
XP_022935092.1 putative pentatricopeptide repeat-containing protein At3g01580 isoform X2 [Cucurbita moschata]2.3e-1472.31Show/hide
Query:  MTSKSMGTFNTMMLNNINPD-VAIVKILTSCSALGILQQALCLHDYFVKTGFTVMSFDHRAVFEM
        M+SKSMGTFNTM+LNNI PD VAIVKIL SCS LGILQQALCLHDY VK+GFT   F   ++ E+
Subjt:  MTSKSMGTFNTMMLNNINPD-VAIVKILTSCSALGILQQALCLHDYFVKTGFTVMSFDHRAVFEM
XP_022982552.1 putative pentatricopeptide repeat-containing protein At3g01580 isoform X2 [Cucurbita maxima]2.3e-1472.31Show/hide
Query:  MTSKSMGTFNTMMLNNINPD-VAIVKILTSCSALGILQQALCLHDYFVKTGFTVMSFDHRAVFEM
        M+SKSMGTFNTM+LNNI PD VAIVKIL SCS LGILQQALCLHDY VK+GFT   F   ++ E+
Subjt:  MTSKSMGTFNTMMLNNINPD-VAIVKILTSCSALGILQQALCLHDYFVKTGFTVMSFDHRAVFEM
TrEMBL top hitse value%identityAlignment
A0A5A7UUL5 Putative pentatricopeptide repeat-containing protein1.2e-1369.23Show/hide
Query:  MTSKSMGTFNTMMLNNINPD-VAIVKILTSCSALGILQQALCLHDYFVKTGFTVMSFDHRAVFEM
        M+ KSMGTFNTM LNNI PD VA+VKIL SCS LGILQQALCLHDY +KTGFT   F   ++ E+
Subjt:  MTSKSMGTFNTMMLNNINPD-VAIVKILTSCSALGILQQALCLHDYFVKTGFTVMSFDHRAVFEM
A0A6J1F3K2 putative pentatricopeptide repeat-containing protein At3g01580 isoform X11.1e-1472.31Show/hide
Query:  MTSKSMGTFNTMMLNNINPD-VAIVKILTSCSALGILQQALCLHDYFVKTGFTVMSFDHRAVFEM
        M+SKSMGTFNTM+LNNI PD VAIVKIL SCS LGILQQALCLHDY VK+GFT   F   ++ E+
Subjt:  MTSKSMGTFNTMMLNNINPD-VAIVKILTSCSALGILQQALCLHDYFVKTGFTVMSFDHRAVFEM
A0A6J1F4M2 putative pentatricopeptide repeat-containing protein At3g01580 isoform X21.1e-1472.31Show/hide
Query:  MTSKSMGTFNTMMLNNINPD-VAIVKILTSCSALGILQQALCLHDYFVKTGFTVMSFDHRAVFEM
        M+SKSMGTFNTM+LNNI PD VAIVKIL SCS LGILQQALCLHDY VK+GFT   F   ++ E+
Subjt:  MTSKSMGTFNTMMLNNINPD-VAIVKILTSCSALGILQQALCLHDYFVKTGFTVMSFDHRAVFEM
A0A6J1IWX0 putative pentatricopeptide repeat-containing protein At3g01580 isoform X21.1e-1472.31Show/hide
Query:  MTSKSMGTFNTMMLNNINPD-VAIVKILTSCSALGILQQALCLHDYFVKTGFTVMSFDHRAVFEM
        M+SKSMGTFNTM+LNNI PD VAIVKIL SCS LGILQQALCLHDY VK+GFT   F   ++ E+
Subjt:  MTSKSMGTFNTMMLNNINPD-VAIVKILTSCSALGILQQALCLHDYFVKTGFTVMSFDHRAVFEM
A0A6J1IZM6 putative pentatricopeptide repeat-containing protein At3g01580 isoform X11.1e-1472.31Show/hide
Query:  MTSKSMGTFNTMMLNNINPD-VAIVKILTSCSALGILQQALCLHDYFVKTGFTVMSFDHRAVFEM
        M+SKSMGTFNTM+LNNI PD VAIVKIL SCS LGILQQALCLHDY VK+GFT   F   ++ E+
Subjt:  MTSKSMGTFNTMMLNNINPD-VAIVKILTSCSALGILQQALCLHDYFVKTGFTVMSFDHRAVFEM
SwissProt top hitse value%identityAlignment
Q9SS97 Putative pentatricopeptide repeat-containing protein At3g015806.9e-0642.42Show/hide
Query:  MTSKSMGTFNTMML-NNINPD-VAIVKILTSCSALGILQQALCLHDYFVKTGFTVMSFDHRAVFEM
        M  +S+  F+ M+L NN  PD + +VK+L SCS LG L+QA C H Y +K GF    F   ++ E+
Subjt:  MTSKSMGTFNTMML-NNINPD-VAIVKILTSCSALGILQQALCLHDYFVKTGFTVMSFDHRAVFEM
Arabidopsis top hitse value%identityAlignment
AT3G01580.1 Tetratricopeptide repeat (TPR)-like superfamily protein4.9e-0742.42Show/hide
Query:  MTSKSMGTFNTMML-NNINPD-VAIVKILTSCSALGILQQALCLHDYFVKTGFTVMSFDHRAVFEM
        M  +S+  F+ M+L NN  PD + +VK+L SCS LG L+QA C H Y +K GF    F   ++ E+
Subjt:  MTSKSMGTFNTMML-NNINPD-VAIVKILTSCSALGILQQALCLHDYFVKTGFTVMSFDHRAVFEM

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATCCAAGTCAATGGGAACCTTCAATACCATGATGTTGAACAACATAAATCCTGATGTTGCCATTGTGAAAATTCTTACCTCTTGTTCAGCTTTGGGCATTCTCCA
ACAAGCACTTTGCCTCCATGACTATTTTGTTAAAACTGGCTTCACTGTAATGAGCTTCGATCATAGAGCTGTGTTCGAAATGCGACAGCATAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGACATCCAAGTCAATGGGAACCTTCAATACCATGATGTTGAACAACATAAATCCTGATGTTGCCATTGTGAAAATTCTTACCTCTTGTTCAGCTTTGGGCATTCTCCA
ACAAGCACTTTGCCTCCATGACTATTTTGTTAAAACTGGCTTCACTGTAATGAGCTTCGATCATAGAGCTGTGTTCGAAATGCGACAGCATAATTAA
Protein sequenceShow/hide protein sequence
MTSKSMGTFNTMMLNNINPDVAIVKILTSCSALGILQQALCLHDYFVKTGFTVMSFDHRAVFEMRQHN