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Clc10G13075 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc10G13075
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPentatricopeptide repeat-containing protein
Genome locationClcChr10:26634631..26635059
RNA-Seq ExpressionClc10G13075
SyntenyClc10G13075
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581055.1 putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]3.9e-0950Show/hide
Query:  MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSVIEAGTEVHSSVTDD-RLHPESDH
        MKVK+IV WS I+AGYGI GQGRE LKLFDKM ETSEVM NE          +   +IE G ++ + + ++ R+ P  +H
Subjt:  MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSVIEAGTEVHSSVTDD-RLHPESDH
KGN59830.2 hypothetical protein Csa_001071 [Cucumis sativus]1.8e-0980.95Show/hide
Query:  MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE
        +KVK+IV WS I+AGYGI GQGRE LKLF+KMIETSEVMPNE
Subjt:  MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE
KGN59830.2 hypothetical protein Csa_001071 [Cucumis sativus]2.7e-0270.59Show/hide
Query:  GQSVIEAGTEVHSSVTDDRLHPESDHIHRLQGNL
        G+SVIEAG EVHS V +DRLH ESD I+RL  NL
Subjt:  GQSVIEAGTEVHSSVTDDRLHPESDHIHRLQGNL
KGN59830.2 hypothetical protein Csa_001071 [Cucumis sativus]1.8e-0980.95Show/hide
Query:  MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE
        +KVK+IV WS I+AGYGI GQGRE LKLF+KMIETSEVMPNE
Subjt:  MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE
XP_008464928.1 PREDICTED: putative pentatricopeptide repeat-containing protein At3g01580 [Cucumis melo]1.8e-0980.95Show/hide
Query:  MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE
        +KVK+IV WS I+AGYGI GQGRE LKLF+KMIETSEVMPNE
Subjt:  MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE
XP_011652303.1 putative pentatricopeptide repeat-containing protein At3g01580 [Cucumis sativus]2.7e-0270.59Show/hide
Query:  GQSVIEAGTEVHSSVTDDRLHPESDHIHRLQGNL
        G+SVIEAG EVHS V +DRLH ESD I+RL  NL
Subjt:  GQSVIEAGTEVHSSVTDDRLHPESDHIHRLQGNL
XP_011652303.1 putative pentatricopeptide repeat-containing protein At3g01580 [Cucumis sativus]3.9e-0950Show/hide
Query:  MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSVIEAGTEVHSSVTDD-RLHPESDH
        MKVK+IV WS I+AGYGI GQGRE LKLFDKM ETSEVM NE          +   +IE G ++ + + ++ R+ P  +H
Subjt:  MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSVIEAGTEVHSSVTDD-RLHPESDH
TrEMBL top hitse value%identityAlignment
A0A0A0LFK2 Uncharacterized protein1.3e-0270.59Show/hide
Query:  GQSVIEAGTEVHSSVTDDRLHPESDHIHRLQGNL
        G+SVIEAG EVHS V +DRLH ESD I+RL  NL
Subjt:  GQSVIEAGTEVHSSVTDDRLHPESDHIHRLQGNL
A0A0A0LFK2 Uncharacterized protein8.6e-1080.95Show/hide
Query:  MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE
        +KVK+IV WS I+AGYGI GQGRE LKLF+KMIETSEVMPNE
Subjt:  MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE
A0A1S3CMP5 putative pentatricopeptide repeat-containing protein At3g015807.8e-0362.79Show/hide
Query:  GQSVIEAGTEVHSSVTDDRLHPESDHIHRLQGNL----RDEGY
        G+SVIEAG EVHS V +DRLH E D I+RL  NL    RDE Y
Subjt:  GQSVIEAGTEVHSSVTDDRLHPESDHIHRLQGNL----RDEGY
A0A1S3CMP5 putative pentatricopeptide repeat-containing protein At3g015801.9e-0950Show/hide
Query:  MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSVIEAGTEVHSSVTDD-RLHPESDH
        MKVK+IV WS I+AGYGI GQGRE LKLFDKM ETSEVM NE          +   +IE G ++ + + ++ R+ P  +H
Subjt:  MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSVIEAGTEVHSSVTDD-RLHPESDH
A0A5A7UUL5 Putative pentatricopeptide repeat-containing protein8.6e-1080.95Show/hide
Query:  MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE
        +KVK+IV WS I+AGYGI GQGRE LKLF+KMIETSEVMPNE
Subjt:  MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE
A0A5A7UUL5 Putative pentatricopeptide repeat-containing protein7.8e-0362.79Show/hide
Query:  GQSVIEAGTEVHSSVTDDRLHPESDHIHRLQGNL----RDEGY
        G+SVIEAG EVHS V +DRLH E D I+RL  NL    RDE Y
Subjt:  GQSVIEAGTEVHSSVTDDRLHPESDHIHRLQGNL----RDEGY
A0A5A7UUL5 Putative pentatricopeptide repeat-containing protein8.6e-1080.95Show/hide
Query:  MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE
        +KVK+IV WS I+AGYGI GQGRE LKLF+KMIETSEVMPNE
Subjt:  MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE
A0A6J1F3K2 putative pentatricopeptide repeat-containing protein At3g01580 isoform X11.9e-0950Show/hide
Query:  MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSVIEAGTEVHSSVTDD-RLHPESDH
        MKVK+IV WS I+AGYGI GQGRE LKLFDKM ETSEVM NE          +   +IE G ++ + + ++ R+ P  +H
Subjt:  MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSVIEAGTEVHSSVTDD-RLHPESDH
SwissProt top hitse value%identityAlignment
Q9SS97 Putative pentatricopeptide repeat-containing protein At3g015801.0e-0433.33Show/hide
Query:  VKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSVIEAGTEVHS-SVTDDRLHPESDH
        +K+ V+W+ ++ GYGI G+G + L+ F+ M+++SEV PNE          +   +I  G  +    V D RL P  +H
Subjt:  VKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSVIEAGTEVHS-SVTDDRLHPESDH
Arabidopsis top hitse value%identityAlignment
AT3G01580.1 Tetratricopeptide repeat (TPR)-like superfamily protein7.4e-0633.33Show/hide
Query:  VKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSVIEAGTEVHS-SVTDDRLHPESDH
        +K+ V+W+ ++ GYGI G+G + L+ F+ M+++SEV PNE          +   +I  G  +    V D RL P  +H
Subjt:  VKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSVIEAGTEVHS-SVTDDRLHPESDH
AT3G12770.1 mitochondrial editing factor 227.0e-0425Show/hide
Query:  KEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNEENSTG-------QSVIEAGTEVHSSVTDDRLHPESDH
        +++V+WS ++ GYG+ G+ RE + L+ + +E   V PN+    G         ++  G    + + D +++P+  H
Subjt:  KEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNEENSTG-------QSVIEAGTEVHSSVTDDRLHPESDH
AT3G16610.1 pentatricopeptide (PPR) repeat-containing protein4.1e-0429.79Show/hide
Query:  MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSVIEAGTEVHSSVT--DDRLHPESDHIHRLQGNLRDEGY
        M  ++IV W+ ++ G+GI G G+E L LF+ M ET  V P+E          +   +++ G ++ +S++  D  + P  DH + +   L   GY
Subjt:  MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNE-------ENSTGQSVIEAGTEVHSSVT--DDRLHPESDHIHRLQGNLRDEGY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGTAAAAGAAATAGTTATCTGGAGTCTGATCATGGCAGGTTATGGAATCCCGGGACAAGGAAGAGAAGATTTGAAACTGTTTGACAAAATGATAGAGACA
TCAGAAGTTATGCCCAACGAAGAGAACTCAACAGGGCAAAGTGTGATTGAAGCAGGAACTGAGGTCCATAGTTCCGTAACTGATGACAGATTACACCCAGAATCT
GACCACATTCATAGGTTACAAGGAAATTTGAGAGATGAAGGTTATTTCAAAATCTTATTTACAGAACATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGTAAAAGAAATAGTTATCTGGAGTCTGATCATGGCAGGTTATGGAATCCCGGGACAAGGAAGAGAAGATTTGAAACTGTTTGACAAAATGATAGAGACA
TCAGAAGTTATGCCCAACGAAGAGAACTCAACAGGGCAAAGTGTGATTGAAGCAGGAACTGAGGTCCATAGTTCCGTAACTGATGACAGATTACACCCAGAATCT
GACCACATTCATAGGTTACAAGGAAATTTGAGAGATGAAGGTTATTTCAAAATCTTATTTACAGAACATTGA
Protein sequenceShow/hide protein sequence
MKVKEIVIWSLIMAGYGIPGQGREDLKLFDKMIETSEVMPNEENSTGQSVIEAGTEVHSSVTDDRLHPESDHIHRLQGNLRDEGYFKILFTEH