CuGenDBv2

Gene ID	Clc10G14085
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	DNA-directed RNA polymerase subunit beta''
Genome location	ClcChr10:27656012..27659849
RNA-Seq Expression	Clc10G14085
Synteny	Clc10G14085
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0009507 - chloroplast (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR007083 - RNA polymerase Rpb1, domain 4 IPR038120 - RNA polymerase Rpb1, funnel domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AMC32372.1 RNA polymerase beta'' subunit [Senna marilandica]

1.4e-67

91.78

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Query:  DDGDLLQSRIGTATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVRIMSFSGARGN
        D    L  R  TATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKH HYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPV IMSFSGARGN
Subjt:  DDGDLLQSRIGTATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVRIMSFSGARGN

Query:  ASQVHQLVGMRGLMSDPQGQMIDLPIQSNFREGLSLTEYRISCYGA
        ASQVHQLVGMRGLMSDPQGQMIDLPIQSN REGLSLTEY ISCYGA
Subjt:  ASQVHQLVGMRGLMSDPQGQMIDLPIQSNFREGLSLTEYRISCYGA

QRI60341.1 RNA polymerase beta'' subunit [Fagelia bituminosa]

1.4e-67

91.78

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Query:  DDGDLLQSRIGTATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVRIMSFSGARGN
        D    L  R  TATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKH HYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPV IMSFSGARGN
Subjt:  DDGDLLQSRIGTATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVRIMSFSGARGN

Query:  ASQVHQLVGMRGLMSDPQGQMIDLPIQSNFREGLSLTEYRISCYGA
        ASQVHQLVGMRGLMSDPQGQMIDLPIQSN REGLSLTEY ISCYGA
Subjt:  ASQVHQLVGMRGLMSDPQGQMIDLPIQSNFREGLSLTEYRISCYGA

QWY87519.1 RNA polymerase beta'' subunit [Pterocarpus tinctorius]

1.4e-67

91.78

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Query:  DDGDLLQSRIGTATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVRIMSFSGARGN
        D    L  R  TATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKH HYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPV IMSFSGARGN
Subjt:  DDGDLLQSRIGTATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVRIMSFSGARGN

Query:  ASQVHQLVGMRGLMSDPQGQMIDLPIQSNFREGLSLTEYRISCYGA
        ASQVHQLVGMRGLMSDPQGQMIDLPIQSN REGLSLTEY ISCYGA
Subjt:  ASQVHQLVGMRGLMSDPQGQMIDLPIQSNFREGLSLTEYRISCYGA

YP_009193156.1 RNA polymerase beta'' subunit [Leucaena trichandra]

1.4e-67

91.78

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Query:  DDGDLLQSRIGTATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVRIMSFSGARGN
        D    L  R  TATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKH HYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPV IMSFSGARGN
Subjt:  DDGDLLQSRIGTATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVRIMSFSGARGN

Query:  ASQVHQLVGMRGLMSDPQGQMIDLPIQSNFREGLSLTEYRISCYGA
        ASQVHQLVGMRGLMSDPQGQMIDLPIQSN REGLSLTEY ISCYGA
Subjt:  ASQVHQLVGMRGLMSDPQGQMIDLPIQSNFREGLSLTEYRISCYGA

YP_009769250.1 RNA polymerase beta'' subunit [Senna bicapsularis]

1.4e-67

91.78

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Query:  DDGDLLQSRIGTATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVRIMSFSGARGN
        D    L  R  TATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKH HYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPV IMSFSGARGN
Subjt:  DDGDLLQSRIGTATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVRIMSFSGARGN

Query:  ASQVHQLVGMRGLMSDPQGQMIDLPIQSNFREGLSLTEYRISCYGA
        ASQVHQLVGMRGLMSDPQGQMIDLPIQSN REGLSLTEY ISCYGA
Subjt:  ASQVHQLVGMRGLMSDPQGQMIDLPIQSNFREGLSLTEYRISCYGA

TrEMBL top hits

e value

%identity

Alignment

A0A1B2CY36 DNA-directed RNA polymerase

6.6e-68

91.78

Show/hide

Query:  DDGDLLQSRIGTATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVRIMSFSGARGN
        D    L  R  TATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKH HYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPV IMSFSGARGN
Subjt:  DDGDLLQSRIGTATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVRIMSFSGARGN

Query:  ASQVHQLVGMRGLMSDPQGQMIDLPIQSNFREGLSLTEYRISCYGA
        ASQVHQLVGMRGLMSDPQGQMIDLPIQSN REGLSLTEY ISCYGA
Subjt:  ASQVHQLVGMRGLMSDPQGQMIDLPIQSNFREGLSLTEYRISCYGA

A0A6H0EC78 DNA-directed RNA polymerase

6.6e-68

91.78

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Query:  DDGDLLQSRIGTATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVRIMSFSGARGN
        D    L  R  TATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKH HYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPV IMSFSGARGN
Subjt:  DDGDLLQSRIGTATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVRIMSFSGARGN

Query:  ASQVHQLVGMRGLMSDPQGQMIDLPIQSNFREGLSLTEYRISCYGA
        ASQVHQLVGMRGLMSDPQGQMIDLPIQSN REGLSLTEY ISCYGA
Subjt:  ASQVHQLVGMRGLMSDPQGQMIDLPIQSNFREGLSLTEYRISCYGA

A0A6M4E9V1 DNA-directed RNA polymerase subunit beta''

6.6e-68

91.78

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Query:  DDGDLLQSRIGTATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVRIMSFSGARGN
        D    L  R  TATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKH HYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPV IMSFSGARGN
Subjt:  DDGDLLQSRIGTATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVRIMSFSGARGN

Query:  ASQVHQLVGMRGLMSDPQGQMIDLPIQSNFREGLSLTEYRISCYGA
        ASQVHQLVGMRGLMSDPQGQMIDLPIQSN REGLSLTEY ISCYGA
Subjt:  ASQVHQLVGMRGLMSDPQGQMIDLPIQSNFREGLSLTEYRISCYGA

A0A6M4EBK5 DNA-directed RNA polymerase subunit beta''

6.6e-68

91.78

Show/hide

Query:  DDGDLLQSRIGTATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVRIMSFSGARGN
        D    L  R  TATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKH HYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPV IMSFSGARGN
Subjt:  DDGDLLQSRIGTATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVRIMSFSGARGN

Query:  ASQVHQLVGMRGLMSDPQGQMIDLPIQSNFREGLSLTEYRISCYGA
        ASQVHQLVGMRGLMSDPQGQMIDLPIQSN REGLSLTEY ISCYGA
Subjt:  ASQVHQLVGMRGLMSDPQGQMIDLPIQSNFREGLSLTEYRISCYGA

A0A6M4EDI5 DNA-directed RNA polymerase subunit beta''

6.6e-68

91.78

Show/hide

Query:  DDGDLLQSRIGTATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVRIMSFSGARGN
        D    L  R  TATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKH HYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPV IMSFSGARGN
Subjt:  DDGDLLQSRIGTATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVRIMSFSGARGN

Query:  ASQVHQLVGMRGLMSDPQGQMIDLPIQSNFREGLSLTEYRISCYGA
        ASQVHQLVGMRGLMSDPQGQMIDLPIQSN REGLSLTEY ISCYGA
Subjt:  ASQVHQLVGMRGLMSDPQGQMIDLPIQSNFREGLSLTEYRISCYGA

SwissProt top hits

e value

%identity

Alignment

Q2MIJ7 DNA-directed RNA polymerase subunit beta''

2.3e-70

97.04

Show/hide

Query:  TATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVRIMSFSGARGNASQVHQLVGMR
        TATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKH HYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPV IMSFSGARGNASQVHQLVGMR
Subjt:  TATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVRIMSFSGARGNASQVHQLVGMR

Query:  GLMSDPQGQMIDLPIQSNFREGLSLTEYRISCYGA
        GLMSDPQGQMIDLPIQSN REGLSLTEY ISCYGA
Subjt:  GLMSDPQGQMIDLPIQSNFREGLSLTEYRISCYGA

Q33C48 DNA-directed RNA polymerase subunit beta''

2.3e-70

97.04

Show/hide

Query:  TATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVRIMSFSGARGNASQVHQLVGMR
        TATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKH HYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPV IMSFSGARGNASQVHQLVGMR
Subjt:  TATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVRIMSFSGARGNASQVHQLVGMR

Query:  GLMSDPQGQMIDLPIQSNFREGLSLTEYRISCYGA
        GLMSDPQGQMIDLPIQSN REGLSLTEY ISCYGA
Subjt:  GLMSDPQGQMIDLPIQSNFREGLSLTEYRISCYGA

Q3C1G9 DNA-directed RNA polymerase subunit beta''

2.3e-70

97.04

Show/hide

Query:  TATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVRIMSFSGARGNASQVHQLVGMR
        TATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKH HYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPV IMSFSGARGNASQVHQLVGMR
Subjt:  TATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVRIMSFSGARGNASQVHQLVGMR

Query:  GLMSDPQGQMIDLPIQSNFREGLSLTEYRISCYGA
        GLMSDPQGQMIDLPIQSN REGLSLTEY ISCYGA
Subjt:  GLMSDPQGQMIDLPIQSNFREGLSLTEYRISCYGA

Q4VZP3 DNA-directed RNA polymerase subunit beta''

2.3e-70

97.04

Show/hide

Query:  TATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVRIMSFSGARGNASQVHQLVGMR
        TATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKH HYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPV IMSFSGARGNASQVHQLVGMR
Subjt:  TATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVRIMSFSGARGNASQVHQLVGMR

Query:  GLMSDPQGQMIDLPIQSNFREGLSLTEYRISCYGA
        GLMSDPQGQMIDLPIQSN REGLSLTEY ISCYGA
Subjt:  GLMSDPQGQMIDLPIQSNFREGLSLTEYRISCYGA

Q8S8Y1 DNA-directed RNA polymerase subunit beta''

2.3e-70

97.04

Show/hide

Query:  TATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVRIMSFSGARGNASQVHQLVGMR
        TATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKH HYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPV IMSFSGARGNASQVHQLVGMR
Subjt:  TATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVRIMSFSGARGNASQVHQLVGMR

Query:  GLMSDPQGQMIDLPIQSNFREGLSLTEYRISCYGA
        GLMSDPQGQMIDLPIQSN REGLSLTEY ISCYGA
Subjt:  GLMSDPQGQMIDLPIQSNFREGLSLTEYRISCYGA

Arabidopsis top hits

e value

%identity

Alignment

ATCG00170.1 DNA-directed RNA polymerase family protein

1.8e-70

95.56

Show/hide

Query:  TATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVRIMSFSGARGNASQVHQLVGMR
        TATSISLGIDDLLTIPSKGWLVQDAEQQS ILEKH HYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPV +MSFSGARGNASQVHQLVGMR
Subjt:  TATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVRIMSFSGARGNASQVHQLVGMR

Query:  GLMSDPQGQMIDLPIQSNFREGLSLTEYRISCYGA
        GLMSDPQGQMIDLPIQSN REGLSLTEY ISCYGA
Subjt:  GLMSDPQGQMIDLPIQSNFREGLSLTEYRISCYGA

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAATCATAATAAGAAGGACGACGACGACGGAGATTTGTTGCAGAGCCGAATAGGAACTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATCCCT
TCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCCACATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCATT
GAGATATGGTATGCTACAAGTGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATGACCGACCCTTTTAATCCAGTCCGTATAATGTCTTTTTCGGGAGCT
CGAGGAAATGCATCTCAAGTACACCAATTAGTAGGTATGAGAGGATTAATGTCAGATCCACAAGGACAAATGATTGATTTACCCATTCAAAGCAATTTCCGTGAG
GGGCTGTCCTTAACGGAATATAGAATTTCTTGCTACGGAGCATGGTCGATTGCTGCCGTCGGCATAACGGGCGGACCTCCTATGGATTCCTCCAACTCAATGAAT
GAAGGGAGGAGTATGAGGAAGGCTGGCTTTCTATATGAAGATGAAAAGAAAAAGAAAAAGGGACGAACATGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MNHNKKDDDDGDLLQSRIGTATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHPHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVRIMSFSGA
RGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNFREGLSLTEYRISCYGAWSIAAVGITGGPPMDSSNSMNEGRSMRKAGFLYEDEKKKKKGRT

Clc10G14085 (gene) of Watermelon (cordophanus) v2 genome