; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc10G14440 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc10G14440
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionS-RNase
Genome locationClcChr10:28124421..28125004
RNA-Seq ExpressionClc10G14440
SyntenyClc10G14440
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0033897 - ribonuclease T2 activity (molecular function)
InterPro domainsIPR001568 - Ribonuclease T2-like
IPR033130 - Ribonuclease T2, His active site 2
IPR036430 - Ribonuclease T2-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AEM42996.1 S-RNase [Siraitia grosvenorii]5.2e-6275.34Show/hide
Query:  ISILQHGIGEIWPNIVTGNNLWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLLFIHGSSQITPNGQVYSSTQGYAAISGKTGKTPAVRCNYNYW
        ISILQ GI EIWPNI+ GNNLWLWGHEWDKHGTC E ILFDQ++YFS AMDTYI+ NLL + G+SQITPNGQ+YS  Q YAAI  KTGKTPAVRCNYN W
Subjt:  ISILQHGIGEIWPNIVTGNNLWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLLFIHGSSQITPNGQVYSSTQGYAAISGKTGKTPAVRCNYNYW

Query:  SGLQQLHEISLCYNWNATAFVDCPLNANKCHNNFVWYPWSTAKPLS
        +G QQ+HE+SLCYN +A+A VDCPLNANKC N FVWY WST K +S
Subjt:  SGLQQLHEISLCYNWNATAFVDCPLNANKCHNNFVWYPWSTAKPLS

XP_022149793.1 ribonuclease MC-like [Momordica charantia]1.3e-4962.33Show/hide
Query:  ISILQHGIGEIWPNIVTGNNLWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLLFIHGSSQITPNGQVYSSTQGYAAISGKTGKTPAVRCNYNYW
        IS LQ GI EIWPN+ TG+N WLW HEWDKHGTC E+  +DQ++YF   MD YI NNL  I  ++QITPNG+ Y+  Q YAAI  KTGKTPAVRCNYN  
Subjt:  ISILQHGIGEIWPNIVTGNNLWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLLFIHGSSQITPNGQVYSSTQGYAAISGKTGKTPAVRCNYNYW

Query:  SGLQQLHEISLCYNWNATAFVDCPLNANKCHNNFVWYPWSTAKPLS
        +G  QLHEISLC+  +A+ F DCPLNANKC  +FVW  W+T K +S
Subjt:  SGLQQLHEISLCYNWNATAFVDCPLNANKCHNNFVWYPWSTAKPLS

XP_022158939.1 ribonuclease MC-like [Momordica charantia]2.7e-2643.97Show/hide
Query:  LISILQHGIGEIWPNIVTGNNLWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLLFIHGSSQITPNGQVYSSTQGYAAISGKTGKTPAVRCNYNY
        +I  +Q  + + WPN++TG N   W +EW KHGTC    L +Q  YF+  +  Y   +L  I     I PNGQ Y+ T    AI   TGK PA+RCN NY
Subjt:  LISILQHGIGEIWPNIVTGNNLWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLLFIHGSSQITPNGQVYSSTQGYAAISGKTGKTPAVRCNYNY

Query:  WSGLQQLHEISLCYNWNATAFVDCPLNANKCHNNFVWYPWS
         +G  QLHEISLC++ N    +DCP N   C+  FVW  WS
Subjt:  WSGLQQLHEISLCYNWNATAFVDCPLNANKCHNNFVWYPWS

XP_038903744.1 ribonuclease MC-like [Benincasa hispida]1.7e-6880.27Show/hide
Query:  ISILQHGIGEIWPNIVTGNNLWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLLFIHGSSQITPNGQVYSSTQGYAAISGKTGKTPAVRCNYNYW
        ISILQ GI EIWPN+VTG N WLWGHEWDKHGTC E+ILFDQE+YFS  MD YIENNL FI G SQITPNGQ+YS  Q YAAIS KTGKTPAVRCNYNYW
Subjt:  ISILQHGIGEIWPNIVTGNNLWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLLFIHGSSQITPNGQVYSSTQGYAAISGKTGKTPAVRCNYNYW

Query:  SGLQQLHEISLCYNWNATAFVDCPLNANKCHNNFVWYPWSTAKPLSI
        SG++QLHEI+LCYNWNATAF DCPLNANKC N F+WYPWST K LS+
Subjt:  SGLQQLHEISLCYNWNATAFVDCPLNANKCHNNFVWYPWSTAKPLSI

XP_038904516.1 ribonuclease MC-like [Benincasa hispida]9.6e-3245.89Show/hide
Query:  ISILQHGIGEIWPNIVTGNNLWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLLFIHGSSQITPNGQVYSSTQGY-------AAISGKTGKTPAV
        + +L+  + E+W N++TG+N WLW  EWDKHGTC E ILFDQ  YF   M+T      L+     +I  NG ++ + +GY       + I  +TGK PAV
Subjt:  ISILQHGIGEIWPNIVTGNNLWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLLFIHGSSQITPNGQVYSSTQGY-------AAISGKTGKTPAV

Query:  RCNYNYWSGLQQLHEISLCYNWNATAFVDCPLNANKCH-NNFVWYP
         CNYN+W+  QQLHEIS C       FVDCP NANKC+ ++ +WYP
Subjt:  RCNYNYWSGLQQLHEISLCYNWNATAFVDCPLNANKCH-NNFVWYP

TrEMBL top hitse value%identityAlignment
A0A6J1D7Q5 ribonuclease MC-like6.5e-5062.33Show/hide
Query:  ISILQHGIGEIWPNIVTGNNLWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLLFIHGSSQITPNGQVYSSTQGYAAISGKTGKTPAVRCNYNYW
        IS LQ GI EIWPN+ TG+N WLW HEWDKHGTC E+  +DQ++YF   MD YI NNL  I  ++QITPNG+ Y+  Q YAAI  KTGKTPAVRCNYN  
Subjt:  ISILQHGIGEIWPNIVTGNNLWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLLFIHGSSQITPNGQVYSSTQGYAAISGKTGKTPAVRCNYNYW

Query:  SGLQQLHEISLCYNWNATAFVDCPLNANKCHNNFVWYPWSTAKPLS
        +G  QLHEISLC+  +A+ F DCPLNANKC  +FVW  W+T K +S
Subjt:  SGLQQLHEISLCYNWNATAFVDCPLNANKCHNNFVWYPWSTAKPLS

A0A6J1DQK2 ribonuclease MC-like8.8e-2339.86Show/hide
Query:  PSTSIVLISILQHGIGEIWPNIVTGNNLWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLLFIHGSSQITPNGQVYSSTQGYAAISGKTGKTPAV
        P     L S ++  + + WP++V   +   W HEW  HGTC    L DQ  YF   +  Y   ++L I     + PNG +Y+ +     I   TGK PA+
Subjt:  PSTSIVLISILQHGIGEIWPNIVTGNNLWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLLFIHGSSQITPNGQVYSSTQGYAAISGKTGKTPAV

Query:  RCNYNYWSGLQQLHEISLCYNWNATAFVDCPLNANKCHNNFVWYPWST
        RCN N+WSG  QLHEISLC+     +  DCP NA KC++ FVW  WS+
Subjt:  RCNYNYWSGLQQLHEISLCYNWNATAFVDCPLNANKCHNNFVWYPWST

A0A6J1E0X1 ribonuclease MC-like1.3e-2643.97Show/hide
Query:  LISILQHGIGEIWPNIVTGNNLWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLLFIHGSSQITPNGQVYSSTQGYAAISGKTGKTPAVRCNYNY
        +I  +Q  + + WPN++TG N   W +EW KHGTC    L +Q  YF+  +  Y   +L  I     I PNGQ Y+ T    AI   TGK PA+RCN NY
Subjt:  LISILQHGIGEIWPNIVTGNNLWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLLFIHGSSQITPNGQVYSSTQGYAAISGKTGKTPAVRCNYNY

Query:  WSGLQQLHEISLCYNWNATAFVDCPLNANKCHNNFVWYPWS
         +G  QLHEISLC++ N    +DCP N   C+  FVW  WS
Subjt:  WSGLQQLHEISLCYNWNATAFVDCPLNANKCHNNFVWYPWS

A0A6J1E266 ribonuclease MC-like9.7e-2239.57Show/hide
Query:  ISILQHGIGEIWPNIVTGNNLWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLLFIHGSSQITPNGQVYSSTQGYAAISGKTGKTPAVRCNYNYW
        IS +++ +   WP+++ G N  LW HEW  HGTC    L  Q  YF+  +DTY + ++        I P+  VYS +    AI   T K P +RCN N +
Subjt:  ISILQHGIGEIWPNIVTGNNLWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLLFIHGSSQITPNGQVYSSTQGYAAISGKTGKTPAVRCNYNYW

Query:  SGLQQLHEISLCYNWNATAFVDCPLNANKCHNNFVWYPW
        S  +QLHEI LC+  +  A +DCP N   C N   WYPW
Subjt:  SGLQQLHEISLCYNWNATAFVDCPLNANKCHNNFVWYPW

K7NBR4 S-RNase2.5e-6275.34Show/hide
Query:  ISILQHGIGEIWPNIVTGNNLWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLLFIHGSSQITPNGQVYSSTQGYAAISGKTGKTPAVRCNYNYW
        ISILQ GI EIWPNI+ GNNLWLWGHEWDKHGTC E ILFDQ++YFS AMDTYI+ NLL + G+SQITPNGQ+YS  Q YAAI  KTGKTPAVRCNYN W
Subjt:  ISILQHGIGEIWPNIVTGNNLWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLLFIHGSSQITPNGQVYSSTQGYAAISGKTGKTPAVRCNYNYW

Query:  SGLQQLHEISLCYNWNATAFVDCPLNANKCHNNFVWYPWSTAKPLS
        +G QQ+HE+SLCYN +A+A VDCPLNANKC N FVWY WST K +S
Subjt:  SGLQQLHEISLCYNWNATAFVDCPLNANKCHNNFVWYPWSTAKPLS

SwissProt top hitse value%identityAlignment
P23540 Ribonuclease MC1.0e-1531.65Show/hide
Query:  IVLISILQHGIGEIWPNIVTGNNLWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLLFIHGSSQITPNGQVYSSTQGYAAISGKTGKTPAVRCNY
        I  IS LQ  +  +WPN++  NN   W HEW KHGTC E+  F+Q  YF LA+D     +++         PNG+  S       +  K GK P +RC  
Subjt:  IVLISILQHGIGEIWPNIVTGNNLWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLLFIHGSSQITPNGQVYSSTQGYAAISGKTGKTPAVRCNY

Query:  NYWSGLQQLHEISLCYNWNATAFVDCPLNANKCHNNFVW
        +  + +  L ++  C+  + +  +DC    + C  NF++
Subjt:  NYWSGLQQLHEISLCYNWNATAFVDCPLNANKCHNNFVW

P42813 Ribonuclease 15.0e-1534.65Show/hide
Query:  ISILQHGIGEIWPNIV--TGNNLWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLLFIHGSSQITPNGQVYSSTQGYAAISGKTGKTPAVRCNYN
        IS L   + + WP +   +G+    W HEW+KHGTC E+++ DQ +YF  A++   + NLL     + I P+G+ YS      +I    G TP V CN +
Subjt:  ISILQHGIGEIWPNIV--TGNNLWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLLFIHGSSQITPNGQVYSSTQGYAAISGKTGKTPAVRCNYN

Query:  YWSGLQQLHEISLCYNWNATAFVDCPL
          SG  QL+++ LC + + +  ++CP+
Subjt:  YWSGLQQLHEISLCYNWNATAFVDCPL

P42815 Ribonuclease 33.0e-1230.71Show/hide
Query:  ISILQHGIGEIWPNIVTGNN--LWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLLFIHGSSQITPNGQVYSSTQGYAAISGKTGKTPAVRCNYN
        +S L   +   WP +   +N  +  W HEW+KHGTC E+ L DQ  YF   +    + NLL    ++ I P+ + Y        I    G  P + CN +
Subjt:  ISILQHGIGEIWPNIVTGNN--LWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLLFIHGSSQITPNGQVYSSTQGYAAISGKTGKTPAVRCNYN

Query:  YWSGLQQLHEISLCYNWNATAFVDCPLNANKCHNNFVWYP
          S   QL++I LC + +A+ F++CP+  +   ++ V +P
Subjt:  YWSGLQQLHEISLCYNWNATAFVDCPLNANKCHNNFVWYP

P80022 Extracellular ribonuclease LE7.0e-1733.86Show/hide
Query:  ISILQHGIGEIWPNIV--TGNNLWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLLFIHGSSQITPNGQVYSSTQGYAAISGKTGKTPAVRCNYN
        IS L   + + WP +   +G+    W HEW+KHGTC E++L +Q  YF  A+D   + +LL I   + I P+G+ Y       AI    G TP ++CN +
Subjt:  ISILQHGIGEIWPNIV--TGNNLWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLLFIHGSSQITPNGQVYSSTQGYAAISGKTGKTPAVRCNYN

Query:  YWSGLQQLHEISLCYNWNATAFVDCPL
          SG  QL+++ +C + + ++ ++CP+
Subjt:  YWSGLQQLHEISLCYNWNATAFVDCPL

P80196 Intracellular ribonuclease LX7.2e-1434.07Show/hide
Query:  WPNIV--TGNNLWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLLFIHGSSQITP-NGQVYSSTQGYAAISGKTGKTPAVRCNYNYWSGLQQLHE
        WP++   + + L  W HEW KHGTC      +Q  YF  A+D   ++NLL    ++ I P NG  Y       AI    G TP + CN +   G  QL++
Subjt:  WPNIV--TGNNLWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLLFIHGSSQITP-NGQVYSSTQGYAAISGKTGKTPAVRCNYNYWSGLQQLHE

Query:  ISLCYNWNATAFVDCPL--NANKCHNNFVWYPWST
        + LC + +A+ F+DCP+  +  KC +   +  +ST
Subjt:  ISLCYNWNATAFVDCPL--NANKCHNNFVWYPWST

Arabidopsis top hitse value%identityAlignment
AT1G14210.1 Ribonuclease T2 family protein2.4e-1235.83Show/hide
Query:  NNLWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLLFIHGSSQITPNGQVYSSTQGYAAISGKTGKTPAVRCNYNYWSGLQQLHEISLCYNWNAT
        N   LW HEW+KHGTC ++I FDQ  YF   +    + +LL I     I PN   YS  +   AI    G  P + CN +   G +QL +I +C +  A 
Subjt:  NNLWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLLFIHGSSQITPNGQVYSSTQGYAAISGKTGKTPAVRCNYNYWSGLQQLHEISLCYNWNAT

Query:  AFVDCPLNANKCHNNFVWYP
         FV+CP   +K   + + +P
Subjt:  AFVDCPLNANKCHNNFVWYP

AT1G14220.1 Ribonuclease T2 family protein1.8e-1535.43Show/hide
Query:  ISILQHGIGEIWPNIVTGNN--LWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLLFIHGSSQITPNGQVYSSTQGYAAISGKTGKTPAVRCNYN
        IS L   + + WP +   +N     W HEW+KHGTC E+++ DQ +YF  A+    + NLL I  +S I P+   Y+  +   AI    G TP + CN +
Subjt:  ISILQHGIGEIWPNIVTGNN--LWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLLFIHGSSQITPNGQVYSSTQGYAAISGKTGKTPAVRCNYN

Query:  YWSGLQQLHEISLCYNWNATAFVDCPL
              QLH+I +C + + T F++CP+
Subjt:  YWSGLQQLHEISLCYNWNATAFVDCPL

AT1G26820.1 ribonuclease 32.1e-1330.71Show/hide
Query:  ISILQHGIGEIWPNIVTGNN--LWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLLFIHGSSQITPNGQVYSSTQGYAAISGKTGKTPAVRCNYN
        +S L   +   WP +   +N  +  W HEW+KHGTC E+ L DQ  YF   +    + NLL    ++ I P+ + Y        I    G  P + CN +
Subjt:  ISILQHGIGEIWPNIVTGNN--LWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLLFIHGSSQITPNGQVYSSTQGYAAISGKTGKTPAVRCNYN

Query:  YWSGLQQLHEISLCYNWNATAFVDCPLNANKCHNNFVWYP
          S   QL++I LC + +A+ F++CP+  +   ++ V +P
Subjt:  YWSGLQQLHEISLCYNWNATAFVDCPLNANKCHNNFVWYP

AT2G02990.1 ribonuclease 13.5e-1634.65Show/hide
Query:  ISILQHGIGEIWPNIV--TGNNLWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLLFIHGSSQITPNGQVYSSTQGYAAISGKTGKTPAVRCNYN
        IS L   + + WP +   +G+    W HEW+KHGTC E+++ DQ +YF  A++   + NLL     + I P+G+ YS      +I    G TP V CN +
Subjt:  ISILQHGIGEIWPNIV--TGNNLWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLLFIHGSSQITPNGQVYSSTQGYAAISGKTGKTPAVRCNYN

Query:  YWSGLQQLHEISLCYNWNATAFVDCPL
          SG  QL+++ LC + + +  ++CP+
Subjt:  YWSGLQQLHEISLCYNWNATAFVDCPL

AT2G39780.1 ribonuclease 21.1e-0927.27Show/hide
Query:  ISILQHGIGEIWPNI-------VTGNNLWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLL-FIHGSSQITPNGQVYSSTQGYAAISGKTGKTPA
        IS L  G+ + WP++         G     WGHEW+KHGTC   +  D+  YF   ++ Y+++N+   ++ +  +  N + Y       AI      TP 
Subjt:  ISILQHGIGEIWPNI-------VTGNNLWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLL-FIHGSSQITPNGQVYSSTQGYAAISGKTGKTPA

Query:  VRCNYNYWSGLQQLHEISLCY
        V C  +       + EI +C+
Subjt:  VRCNYNYWSGLQQLHEISLCY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTAGTGATCCATCGACCTCTATTGTTTTGATTAGCATACTCCAACATGGAATTGGTGAAATATGGCCCAATATTGTGACAGGAAACAATCTATGGTTATGG
GGACACGAGTGGGATAAACATGGAACTTGTAGGGAGACCATCTTATTCGACCAAGAACAATATTTCAGTTTAGCAATGGACACATACATTGAAAACAATCTATTG
TTTATTCATGGTAGTAGCCAAATTACACCAAATGGCCAAGTTTATTCAAGCACTCAAGGTTATGCAGCAATAAGTGGAAAGACTGGAAAAACACCAGCCGTTCGA
TGCAACTACAACTATTGGAGTGGACTTCAACAATTACATGAAATAAGTCTTTGCTACAATTGGAATGCTACTGCTTTTGTGGACTGCCCTTTGAATGCCAACAAA
TGCCATAATAATTTTGTGTGGTATCCATGGAGCACTGCCAAGCCTTTATCTATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCGTAGTGATCCATCGACCTCTATTGTTTTGATTAGCATACTCCAACATGGAATTGGTGAAATATGGCCCAATATTGTGACAGGAAACAATCTATGGTTATGG
GGACACGAGTGGGATAAACATGGAACTTGTAGGGAGACCATCTTATTCGACCAAGAACAATATTTCAGTTTAGCAATGGACACATACATTGAAAACAATCTATTG
TTTATTCATGGTAGTAGCCAAATTACACCAAATGGCCAAGTTTATTCAAGCACTCAAGGTTATGCAGCAATAAGTGGAAAGACTGGAAAAACACCAGCCGTTCGA
TGCAACTACAACTATTGGAGTGGACTTCAACAATTACATGAAATAAGTCTTTGCTACAATTGGAATGCTACTGCTTTTGTGGACTGCCCTTTGAATGCCAACAAA
TGCCATAATAATTTTGTGTGGTATCCATGGAGCACTGCCAAGCCTTTATCTATCTAA
Protein sequenceShow/hide protein sequence
MRSDPSTSIVLISILQHGIGEIWPNIVTGNNLWLWGHEWDKHGTCRETILFDQEQYFSLAMDTYIENNLLFIHGSSQITPNGQVYSSTQGYAAISGKTGKTPAVR
CNYNYWSGLQQLHEISLCYNWNATAFVDCPLNANKCHNNFVWYPWSTAKPLSI