; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc10G14530 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc10G14530
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRibonuclease T(2)
Genome locationClcChr10:28181652..28184798
RNA-Seq ExpressionClc10G14530
SyntenyClc10G14530
Gene Ontology termsGO:0006401 - RNA catabolic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0033897 - ribonuclease T2 activity (molecular function)
InterPro domainsIPR001568 - Ribonuclease T2-like
IPR018188 - Ribonuclease T2, His active site 1
IPR033130 - Ribonuclease T2, His active site 2
IPR036430 - Ribonuclease T2-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147499.1 ribonuclease MC [Cucumis sativus]1.3e-4984.31Show/hide
Query:  MVKSQTFDDFWFVQQWPPAVCAVQSGRCVGQGLYSFTIHGLWPQKGGSSITNCAGNSFTFAKIAHLENDLNMVWPNVITGNNIFFWGYEWNKHGICSESK
        +VKSQTFDDFWFVQQWPPAVC +QSGRCVG+G  SFTIHGLWPQKGG S+TNC GN F F KIAHLENDLN+VWPNV+TGNN FFWG+EWNKHGICSESK
Subjt:  MVKSQTFDDFWFVQQWPPAVCAVQSGRCVGQGLYSFTIHGLWPQKGGSSITNCAGNSFTFAKIAHLENDLNMVWPNVITGNNIFFWGYEWNKHGICSESK

Query:  FD
        FD
Subjt:  FD

XP_008443402.1 PREDICTED: ribonuclease MC-like [Cucumis melo]6.3e-4982.35Show/hide
Query:  MVKSQTFDDFWFVQQWPPAVCAVQSGRCVGQGLYSFTIHGLWPQKGGSSITNCAGNSFTFAKIAHLENDLNMVWPNVITGNNIFFWGYEWNKHGICSESK
        +VKSQTFD+FWFVQQWPPA+C +QSGRCVG+G  SFTIHGLWPQKGG S+TNC+GNSF F KIAHLE+DLN+VWPNV+TGNN FFWG+EWNKHGICSESK
Subjt:  MVKSQTFDDFWFVQQWPPAVCAVQSGRCVGQGLYSFTIHGLWPQKGGSSITNCAGNSFTFAKIAHLENDLNMVWPNVITGNNIFFWGYEWNKHGICSESK

Query:  FD
        FD
Subjt:  FD

XP_022142280.1 ribonuclease MC-like [Momordica charantia]1.1e-4575.73Show/hide
Query:  MVKSQTFDDFWFVQQWPPAVCAVQSGRCVGQGLYSFTIHGLWPQKGGSSITNCAGNSFTFAKIAHLENDLNMVWPNVITGNNIFFWGYEWNKHGICSESK
        +VKSQ FD+FWFVQQWPPAVC  Q GRCVGQGL +FT+HGLWPQKGG+S+ NC+G  F F +++HL+NDLN VWPNVITGNN FFWG+EWNKHGICSESK
Subjt:  MVKSQTFDDFWFVQQWPPAVCAVQSGRCVGQGLYSFTIHGLWPQKGGSSITNCAGNSFTFAKIAHLENDLNMVWPNVITGNNIFFWGYEWNKHGICSESK

Query:  FDV
        FD+
Subjt:  FDV

XP_022935695.1 ribonuclease MC-like [Cucurbita moschata]1.9e-4578.43Show/hide
Query:  MVKSQTFDDFWFVQQWPPAVCAVQSGRCVGQGLYSFTIHGLWPQKGGSSITNCAGNSFTFAKIAHLENDLNMVWPNVITGNNIFFWGYEWNKHGICSESK
        M KSQ FDDFWFVQQWPP VCA+QSGRCVG+G  SFTIHGLWPQKGG+S+TNC G SF F +I+HLENDLN+VWPN+ITGN+ +FWG+EWN HGICSESK
Subjt:  MVKSQTFDDFWFVQQWPPAVCAVQSGRCVGQGLYSFTIHGLWPQKGGSSITNCAGNSFTFAKIAHLENDLNMVWPNVITGNNIFFWGYEWNKHGICSESK

Query:  FD
        FD
Subjt:  FD

XP_038905534.1 ribonuclease MC-like [Benincasa hispida]3.0e-5188.24Show/hide
Query:  MVKSQTFDDFWFVQQWPPAVCAVQSGRCVGQGLYSFTIHGLWPQKGGSSITNCAGNSFTFAKIAHLENDLNMVWPNVITGNNIFFWGYEWNKHGICSESK
        +V+SQTFDDFWFVQQWPPAVCA+QSGRCVG+G  SFTIHGLWPQKGGSS+TNCAGNSF F KIAHLENDLN+VWPNVITGNN FFWG+EWNKHGICSESK
Subjt:  MVKSQTFDDFWFVQQWPPAVCAVQSGRCVGQGLYSFTIHGLWPQKGGSSITNCAGNSFTFAKIAHLENDLNMVWPNVITGNNIFFWGYEWNKHGICSESK

Query:  FD
        FD
Subjt:  FD

TrEMBL top hitse value%identityAlignment
A0A0A0LC37 Ribonuclease T(2)6.1e-5084.31Show/hide
Query:  MVKSQTFDDFWFVQQWPPAVCAVQSGRCVGQGLYSFTIHGLWPQKGGSSITNCAGNSFTFAKIAHLENDLNMVWPNVITGNNIFFWGYEWNKHGICSESK
        +VKSQTFDDFWFVQQWPPAVC +QSGRCVG+G  SFTIHGLWPQKGG S+TNC GN F F KIAHLENDLN+VWPNV+TGNN FFWG+EWNKHGICSESK
Subjt:  MVKSQTFDDFWFVQQWPPAVCAVQSGRCVGQGLYSFTIHGLWPQKGGSSITNCAGNSFTFAKIAHLENDLNMVWPNVITGNNIFFWGYEWNKHGICSESK

Query:  FD
        FD
Subjt:  FD

A0A1S3B8Q3 Ribonuclease T(2)3.0e-4982.35Show/hide
Query:  MVKSQTFDDFWFVQQWPPAVCAVQSGRCVGQGLYSFTIHGLWPQKGGSSITNCAGNSFTFAKIAHLENDLNMVWPNVITGNNIFFWGYEWNKHGICSESK
        +VKSQTFD+FWFVQQWPPA+C +QSGRCVG+G  SFTIHGLWPQKGG S+TNC+GNSF F KIAHLE+DLN+VWPNV+TGNN FFWG+EWNKHGICSESK
Subjt:  MVKSQTFDDFWFVQQWPPAVCAVQSGRCVGQGLYSFTIHGLWPQKGGSSITNCAGNSFTFAKIAHLENDLNMVWPNVITGNNIFFWGYEWNKHGICSESK

Query:  FD
        FD
Subjt:  FD

A0A6J1CKH7 Ribonuclease T(2)5.3e-4675.73Show/hide
Query:  MVKSQTFDDFWFVQQWPPAVCAVQSGRCVGQGLYSFTIHGLWPQKGGSSITNCAGNSFTFAKIAHLENDLNMVWPNVITGNNIFFWGYEWNKHGICSESK
        +VKSQ FD+FWFVQQWPPAVC  Q GRCVGQGL +FT+HGLWPQKGG+S+ NC+G  F F +++HL+NDLN VWPNVITGNN FFWG+EWNKHGICSESK
Subjt:  MVKSQTFDDFWFVQQWPPAVCAVQSGRCVGQGLYSFTIHGLWPQKGGSSITNCAGNSFTFAKIAHLENDLNMVWPNVITGNNIFFWGYEWNKHGICSESK

Query:  FDV
        FD+
Subjt:  FDV

A0A6J1DQN7 ribonuclease MC-like2.2e-4474.76Show/hide
Query:  MVKSQTFDDFWFVQQWPPAVCAVQSGRCVGQGLYSFTIHGLWPQKGGSSITNCAGNSFTFAKIAHLENDLNMVWPNVITGNNIFFWGYEWNKHGICSESK
        +VKSQTFDDFWFVQQWPPAVC+ Q GRCVGQGL +FTIHG+WPQKGG+S+ NC G  F F KI+ LE DLN VWPNVITG+N FFW +EWNKHG+CSESK
Subjt:  MVKSQTFDDFWFVQQWPPAVCAVQSGRCVGQGLYSFTIHGLWPQKGGSSITNCAGNSFTFAKIAHLENDLNMVWPNVITGNNIFFWGYEWNKHGICSESK

Query:  FDV
        F++
Subjt:  FDV

A0A6J1FBD8 Ribonuclease T(2)9.1e-4678.43Show/hide
Query:  MVKSQTFDDFWFVQQWPPAVCAVQSGRCVGQGLYSFTIHGLWPQKGGSSITNCAGNSFTFAKIAHLENDLNMVWPNVITGNNIFFWGYEWNKHGICSESK
        M KSQ FDDFWFVQQWPP VCA+QSGRCVG+G  SFTIHGLWPQKGG+S+TNC G SF F +I+HLENDLN+VWPN+ITGN+ +FWG+EWN HGICSESK
Subjt:  MVKSQTFDDFWFVQQWPPAVCAVQSGRCVGQGLYSFTIHGLWPQKGGSSITNCAGNSFTFAKIAHLENDLNMVWPNVITGNNIFFWGYEWNKHGICSESK

Query:  FD
        FD
Subjt:  FD

SwissProt top hitse value%identityAlignment
P23540 Ribonuclease MC2.2e-3362.24Show/hide
Query:  FDDFWFVQQWPPAVCAVQ-SGRCVGQGLYSFTIHGLWPQKGGSSITNC-AGNSFTFAKIAHLENDLNMVWPNVITGNNIFFWGYEWNKHGICSESKFD
        FD FWFVQQWPPAVC+ Q SG C G GL +FTIHGLWPQ  G+S+TNC  G+ F   KI+HL++ LN +WPNV+  NN  FW +EW KHG CSES F+
Subjt:  FDDFWFVQQWPPAVCAVQ-SGRCVGQGLYSFTIHGLWPQKGGSSITNC-AGNSFTFAKIAHLENDLNMVWPNVITGNNIFFWGYEWNKHGICSESKFD

P42813 Ribonuclease 19.5e-1641.51Show/hide
Query:  SQTFDDFWFVQQWPPAVCAVQSGRCV---GQGLYSFTIHGLWPQ-KGGSSITNC-AGNSFTFAKIAHLENDLNMVWPNVI--TGNNIFFWGYEWNKHGIC
        S+ FD F+FVQQWP + C  Q   C    G+    F IHGLWP  K G+  +NC A   F  + I+ L   +   WP +   +G+   FW +EW KHG C
Subjt:  SQTFDDFWFVQQWPPAVCAVQSGRCV---GQGLYSFTIHGLWPQ-KGGSSITNC-AGNSFTFAKIAHLENDLNMVWPNVI--TGNNIFFWGYEWNKHGIC

Query:  SESKFD
        SES  D
Subjt:  SESKFD

P42815 Ribonuclease 38.0e-1540.57Show/hide
Query:  SQTFDDFWFVQQWPPAVCAVQSGRC---VGQGLYSFTIHGLWPQ-KGGSSITNCAGNS-FTFAKIAHLENDLNMVWPNVITGNN--IFFWGYEWNKHGIC
        +Q FD F+FV QWP A C  +   C    G+    F IHGLWP  K G    NC  +S F   +++ L +DL   WP +   +N  + FW +EW KHG C
Subjt:  SQTFDDFWFVQQWPPAVCAVQSGRC---VGQGLYSFTIHGLWPQ-KGGSSITNCAGNS-FTFAKIAHLENDLNMVWPNVITGNN--IFFWGYEWNKHGIC

Query:  SESKFD
        +ES+ D
Subjt:  SESKFD

P80022 Extracellular ribonuclease LE2.3e-1437.86Show/hide
Query:  SQTFDDFWFVQQWPPAVCAVQSGRC---VGQGLYSFTIHGLWPQKG-GSSITNCAGNS-FTFAKIAHLENDLNMVWPNVI--TGNNIFFWGYEWNKHGIC
        ++ FD F+FVQQWP + C  +   C    G+    F IHGLWP    G+  +NC  NS +  ++I+ L + +   WP +   +G+   FW +EW KHG C
Subjt:  SQTFDDFWFVQQWPPAVCAVQSGRC---VGQGLYSFTIHGLWPQKG-GSSITNCAGNS-FTFAKIAHLENDLNMVWPNVI--TGNNIFFWGYEWNKHGIC

Query:  SES
        +ES
Subjt:  SES

Q7M438 Ribonuclease DdI1.8e-1444.33Show/hide
Query:  KSQTFDDFWFVQQWPPAVCAVQSGRCV-GQGLYSFTIHGLWPQKG-GSSITNCAGNSFTFAKIAHLENDLNMVWPNVITGNNIFFWGYEWNKHGICS
        K   FD + FVQQW  + C  Q+  C+  +   +FTIHGLWP+   GS  + C+G SF    I  LE+ LN  WP+ +TG N  FW +E++KHG CS
Subjt:  KSQTFDDFWFVQQWPPAVCAVQSGRCV-GQGLYSFTIHGLWPQKG-GSSITNCAGNSFTFAKIAHLENDLNMVWPNVITGNNIFFWGYEWNKHGICS

Arabidopsis top hitse value%identityAlignment
AT1G14210.1 Ribonuclease T2 family protein1.7e-1237.14Show/hide
Query:  FDDFWFVQQWPPAVCAVQSGRC---VGQGLYSFTIHGLWPQ-KGGSSITNC-AGNSFTFAKIAHLENDLNMVWPN----VITGNNIFFWGYEWNKHGICS
        F+ F++V  WP A+C  Q G C    G     F IHGLWPQ   G+    C   N F  +KI+ L   +   W          N    W +EWNKHG C 
Subjt:  FDDFWFVQQWPPAVCAVQSGRC---VGQGLYSFTIHGLWPQ-KGGSSITNC-AGNSFTFAKIAHLENDLNMVWPN----VITGNNIFFWGYEWNKHGICS

Query:  ESKFD
        +S FD
Subjt:  ESKFD

AT1G14220.1 Ribonuclease T2 family protein9.7e-1641.9Show/hide
Query:  QTFDDFWFVQQWPPAVCAVQSGRCV---GQGLYSFTIHGLWPQ-KGGSSITNCAGNS-FTFAKIAHLENDLNMVWPNVITGNN--IFFWGYEWNKHGICS
        + FD F+FV QWP A C      C    G+    F IHGLWP   GGS  +NC  +S F  ++I+ L + L   WP +   +N    FW +EW KHG CS
Subjt:  QTFDDFWFVQQWPPAVCAVQSGRCV---GQGLYSFTIHGLWPQ-KGGSSITNCAGNS-FTFAKIAHLENDLNMVWPNVITGNN--IFFWGYEWNKHGICS

Query:  ESKFD
        ES  D
Subjt:  ESKFD

AT1G26820.1 ribonuclease 35.7e-1640.57Show/hide
Query:  SQTFDDFWFVQQWPPAVCAVQSGRC---VGQGLYSFTIHGLWPQ-KGGSSITNCAGNS-FTFAKIAHLENDLNMVWPNVITGNN--IFFWGYEWNKHGIC
        +Q FD F+FV QWP A C  +   C    G+    F IHGLWP  K G    NC  +S F   +++ L +DL   WP +   +N  + FW +EW KHG C
Subjt:  SQTFDDFWFVQQWPPAVCAVQSGRC---VGQGLYSFTIHGLWPQ-KGGSSITNCAGNS-FTFAKIAHLENDLNMVWPNVITGNN--IFFWGYEWNKHGIC

Query:  SESKFD
        +ES+ D
Subjt:  SESKFD

AT2G02990.1 ribonuclease 16.7e-1741.51Show/hide
Query:  SQTFDDFWFVQQWPPAVCAVQSGRCV---GQGLYSFTIHGLWPQ-KGGSSITNC-AGNSFTFAKIAHLENDLNMVWPNVI--TGNNIFFWGYEWNKHGIC
        S+ FD F+FVQQWP + C  Q   C    G+    F IHGLWP  K G+  +NC A   F  + I+ L   +   WP +   +G+   FW +EW KHG C
Subjt:  SQTFDDFWFVQQWPPAVCAVQSGRCV---GQGLYSFTIHGLWPQ-KGGSSITNC-AGNSFTFAKIAHLENDLNMVWPNVI--TGNNIFFWGYEWNKHGIC

Query:  SESKFD
        SES  D
Subjt:  SESKFD

AT2G39780.1 ribonuclease 21.2e-1034.55Show/hide
Query:  FDDFWFVQQWPPAV------CAVQSGRCVGQGL-YSFTIHGLWPQKGGSSITNCAGNS-FTFAKIAHLENDLNMVWPNV-------ITGNNIFFWGYEWN
        FD F    QWP         C  ++  C G      FTIHGLWP     S  +C   S F   +I+ L + L   WP++         G    FWG+EW 
Subjt:  FDDFWFVQQWPPAV------CAVQSGRCVGQGL-YSFTIHGLWPQKGGSSITNCAGNS-FTFAKIAHLENDLNMVWPNV-------ITGNNIFFWGYEWN

Query:  KHGICSESKF
        KHG CS   F
Subjt:  KHGICSESKF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTAAATCACAAACTTTTGATGATTTTTGGTTTGTTCAACAATGGCCACCAGCTGTTTGTGCTGTACAATCAGGAAGATGTGTAGGACAAGGATTATATTCATTCAC
AATTCATGGTTTGTGGCCTCAAAAAGGAGGAAGCTCTATAACTAATTGTGCTGGCAATTCCTTTACTTTCGCTAAGATTGCGCACTTAGAAAATGATTTGAACATGGTTT
GGCCAAATGTGATAACGGGAAACAACATATTCTTTTGGGGTTACGAGTGGAACAAACATGGAATTTGCTCAGAAAGCAAGTTCGATGTAACGACCCGACTAATACATCCT
AATCAGACCATTACTCAATGCATGCAAATTTCAAGAAAAGACACGATGCTGAGTAGTAAGAAAGAAACAATGCTACTCATGGAAATTTCTGTTTATTTAACCGAAGAAAA
TATTGAATAA
mRNA sequenceShow/hide mRNA sequence
TACAACTTGAAAGTTTGGCTAACATAGATAGGATAATGACAACTCTAAAAAATATTGTGTTCTTCGTGTTTGTCTTTAACTATTTTGTTTTCTATGGTTAAATCACAAAC
TTTTGATGATTTTTGGTTTGTTCAACAATGGCCACCAGCTGTTTGTGCTGTACAATCAGGAAGATGTGTAGGACAAGGATTATATTCATTCACAATTCATGGTTTGTGGC
CTCAAAAAGGAGGAAGCTCTATAACTAATTGTGCTGGCAATTCCTTTACTTTCGCTAAGATTGCGCACTTAGAAAATGATTTGAACATGGTTTGGCCAAATGTGATAACG
GGAAACAACATATTCTTTTGGGGTTACGAGTGGAACAAACATGGAATTTGCTCAGAAAGCAAGTTCGATGTAACGACCCGACTAATACATCCTAATCAGACCATTACTCA
ATGCATGCAAATTTCAAGAAAAGACACGATGCTGAGTAGTAAGAAAGAAACAATGCTACTCATGGAAATTTCTGTTTATTTAACCGAAGAAAATATTGAATAACCATATA
AAAGAATTTTGGTTCGGGGTACCCCTGATAAAATCATTAATATTTCACGGATAGGATTCCAAATACAAAATGAAAGACAAGCCTCAAAACAAAATTTGACAACTGAATAA
AACTCATGAAAAAAAAACATGCAGTGCTAAGCGGAAGTTACACCGGGTCCCGTGATGTCATCAAGGAATCCTCTTGTCATTCGCCAGCACGTCCTTTCCCTTACCTG
Protein sequenceShow/hide protein sequence
MVKSQTFDDFWFVQQWPPAVCAVQSGRCVGQGLYSFTIHGLWPQKGGSSITNCAGNSFTFAKIAHLENDLNMVWPNVITGNNIFFWGYEWNKHGICSESKFDVTTRLIHP
NQTITQCMQISRKDTMLSSKKETMLLMEISVYLTEENIE