CuGenDBv2

Gene ID	Clc10G15183
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	60S ribosomal protein L23
Genome location	ClcChr10:28762655..28772283
RNA-Seq Expression	Clc10G15183
Synteny	Clc10G15183
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000218 - Ribosomal protein L14P

Homology

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GenBank top hits

e value

%identity

Alignment

AQK55492.1 60S ribosomal protein L23 [Zea mays]

3.5e-13

51.06

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Query:  RNLYIITAKYIKGHLNKLPLACVGDMAVETKKKGKPDLKKKILPNVSGNASHGSKRM--------GCSRVIVNPKGEMKGVLLDRSVHICGLGL
        +NLYII+ K IKG LN+LP ACVGDM + T KKGKPDL+KK++P V        +R           + VIVNPKGEMKG+LL+  + +C L L
Subjt:  RNLYIITAKYIKGHLNKLPLACVGDMAVETKKKGKPDLKKKILPNVSGNASHGSKRM--------GCSRVIVNPKGEMKGVLLDRSVHICGLGL

CAB4315829.1 unnamed protein product [Prunus armeniaca]

5.9e-13

54.55

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Query:  RNLYIITAKYIKGHLNKLPLACVGDMAVETKKKGKPDLKKKILPNV--SGNASHGSKRMGC--------------SRVIVNPKGEMKG
        +NLYII+ K IKG LN+LP ACVGDM + T KKGKPDL+KK+LP V  + +ASHG++   C              + VIVNPKGEMKG
Subjt:  RNLYIITAKYIKGHLNKLPLACVGDMAVETKKKGKPDLKKKILPNV--SGNASHGSKRMGC--------------SRVIVNPKGEMKG

KAF6169780.1 hypothetical protein GIB67_034172, partial [Kingdonia uniflora]

6.1e-18

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Query:  KDLHVTSLGCHWVYQWQRWYIVPATQEPRNLYIITAKYIKGHLNKLPLACVGDMAVETKKKGKPDLKKKILPNVSGNASHGSKRMGCSRVIVNPKGEMKG
        +DL  TS GCH VYQWQR +        +NLYII+ K IKG LN+LP ACVGDM + T KKGKPDL+KK    VS  AS        + VIVNPKGEMKG
Subjt:  KDLHVTSLGCHWVYQWQRWYIVPATQEPRNLYIITAKYIKGHLNKLPLACVGDMAVETKKKGKPDLKKKILPNVSGNASHGSKRMGCSRVIVNPKGEMKG

KAF6175559.1 hypothetical protein GIB67_007869, partial [Kingdonia uniflora]

4.8e-15

59.46

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Query:  KRAKDLHVTSLGCHWVYQWQRWYIVPATQEPRNLYIITAKYIKGHLNKLPLACVGDMAVETKKKGKPDLKKKIL
        K A+DL  T+LGCHWV+QWQ+      T   +NLYII+ K IKG LN+LP ACVGDM + T KKGKPDL+KK++
Subjt:  KRAKDLHVTSLGCHWVYQWQRWYIVPATQEPRNLYIITAKYIKGHLNKLPLACVGDMAVETKKKGKPDLKKKIL

KAG6764590.1 hypothetical protein POTOM_032066 [Populus tomentosa]

5.7e-16

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Query:  RNLYIITAKYIKGHLNKLPLACVGDMAVETKKKGKPDLKKKILPNVSGNASHGSKRM--------GCSRVIVNPKGEMKG----------VLLDRSVHIC
        +NLYII+ K IKG LN+LP ACVGDM + T KKGKPDL+KK++P V        +R           + VIVNPKGEMKG          V L+RSV I 
Subjt:  RNLYIITAKYIKGHLNKLPLACVGDMAVETKKKGKPDLKKKILPNVSGNASHGSKRM--------GCSRVIVNPKGEMKG----------VLLDRSVHIC

Query:  GLGLQVQPMLLF-----SVLLEFKSYSR
        GLGLQVQ ML F     SV   ++SY R
Subjt:  GLGLQVQPMLLF-----SVLLEFKSYSR

TrEMBL top hits

e value

%identity

Alignment

A0A0R0GZ38 Uncharacterized protein

4.1e-12

53.57

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Query:  RNLYIITAKYIKGHLNKLPLACVGDMAVETKKKGKPDLKKKILPNVSGNASHGSKRM--------GCSRVIVNPKGEMKGVLLD
        +NLYII+ K IKG LN+LP ACVGDM + T KKGKPDL+KK+LP V        +R           + VIVNPKGEMKG+  D
Subjt:  RNLYIITAKYIKGHLNKLPLACVGDMAVETKKKGKPDLKKKILPNVSGNASHGSKRM--------GCSRVIVNPKGEMKGVLLD

A0A6J5XQ86 Uncharacterized protein

2.9e-13

54.55

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Query:  RNLYIITAKYIKGHLNKLPLACVGDMAVETKKKGKPDLKKKILPNV--SGNASHGSKRMGC--------------SRVIVNPKGEMKG
        +NLYII+ K IKG LN+LP ACVGDM + T KKGKPDL+KK+LP V  + +ASHG++   C              + VIVNPKGEMKG
Subjt:  RNLYIITAKYIKGHLNKLPLACVGDMAVETKKKGKPDLKKKILPNV--SGNASHGSKRMGC--------------SRVIVNPKGEMKG

A0A7J7NRW2 Uncharacterized protein

3.0e-18

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Query:  KDLHVTSLGCHWVYQWQRWYIVPATQEPRNLYIITAKYIKGHLNKLPLACVGDMAVETKKKGKPDLKKKILPNVSGNASHGSKRMGCSRVIVNPKGEMKG
        +DL  TS GCH VYQWQR +        +NLYII+ K IKG LN+LP ACVGDM + T KKGKPDL+KK    VS  AS        + VIVNPKGEMKG
Subjt:  KDLHVTSLGCHWVYQWQRWYIVPATQEPRNLYIITAKYIKGHLNKLPLACVGDMAVETKKKGKPDLKKKILPNVSGNASHGSKRMGCSRVIVNPKGEMKG

A0A7J7P7Z8 Uncharacterized protein

2.3e-15

59.46

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Query:  KRAKDLHVTSLGCHWVYQWQRWYIVPATQEPRNLYIITAKYIKGHLNKLPLACVGDMAVETKKKGKPDLKKKIL
        K A+DL  T+LGCHWV+QWQ+      T   +NLYII+ K IKG LN+LP ACVGDM + T KKGKPDL+KK++
Subjt:  KRAKDLHVTSLGCHWVYQWQRWYIVPATQEPRNLYIITAKYIKGHLNKLPLACVGDMAVETKKKGKPDLKKKIL

K7U8V8 60S ribosomal protein L23

1.7e-13

51.06

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Query:  RNLYIITAKYIKGHLNKLPLACVGDMAVETKKKGKPDLKKKILPNVSGNASHGSKRM--------GCSRVIVNPKGEMKGVLLDRSVHICGLGL
        +NLYII+ K IKG LN+LP ACVGDM + T KKGKPDL+KK++P V        +R           + VIVNPKGEMKG+LL+  + +C L L
Subjt:  RNLYIITAKYIKGHLNKLPLACVGDMAVETKKKGKPDLKKKILPNVSGNASHGSKRM--------GCSRVIVNPKGEMKGVLLDRSVHICGLGL

SwissProt top hits

e value

%identity

Alignment

P49690 60S ribosomal protein L23

9.5e-14

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Query:  RNLYIITAKYIKGHLNKLPLACVGDMAVETKKKGKPDLKKKILPNVSGNASHGSKRM--------GCSRVIVNPKGEMKG
        +NLYII+ K IKG LN+LP ACVGDM + T KKGKPDL+KK+LP V        +R           + VIVNPKGEMKG
Subjt:  RNLYIITAKYIKGHLNKLPLACVGDMAVETKKKGKPDLKKKILPNVSGNASHGSKRM--------GCSRVIVNPKGEMKG

P62829 60S ribosomal protein L23

2.2e-10

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Query:  RNLYIITAKYIKGHLNKLPLACVGDMAVETKKKGKPDLKKKILPNVSGNASHGSKRM--------GCSRVIVNPKGEMKG
        +NLYII+ K IKG LN+LP A VGDM + T KKGKP+L+KK+ P V        +R           + VIVN KGEMKG
Subjt:  RNLYIITAKYIKGHLNKLPLACVGDMAVETKKKGKPDLKKKILPNVSGNASHGSKRM--------GCSRVIVNPKGEMKG

Q07760 60S ribosomal protein L23

1.4e-12

52.5

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Query:  RNLYIITAKYIKGHLNKLPLACVGDMAVETKKKGKPDLKKKILPNVSGNASHGSKRM--------GCSRVIVNPKGEMKG
        +NLYII+ K IKG LN+LP ACVGDM + T KKGKPDL+KK++P V        +R           + VIVN KGEMKG
Subjt:  RNLYIITAKYIKGHLNKLPLACVGDMAVETKKKGKPDLKKKILPNVSGNASHGSKRM--------GCSRVIVNPKGEMKG

Q3T057 60S ribosomal protein L23

2.2e-10

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Query:  RNLYIITAKYIKGHLNKLPLACVGDMAVETKKKGKPDLKKKILPNVSGNASHGSKRM--------GCSRVIVNPKGEMKG
        +NLYII+ K IKG LN+LP A VGDM + T KKGKP+L+KK+ P V        +R           + VIVN KGEMKG
Subjt:  RNLYIITAKYIKGHLNKLPLACVGDMAVETKKKGKPDLKKKILPNVSGNASHGSKRM--------GCSRVIVNPKGEMKG

Q90YU5 60S ribosomal protein L23

2.2e-10

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Query:  RNLYIITAKYIKGHLNKLPLACVGDMAVETKKKGKPDLKKKILPNVSGNASHGSKRM--------GCSRVIVNPKGEMKG
        +NLYII+ K IKG LN+LP A VGDM + T KKGKP+L+KK+ P V        +R           + VIVN KGEMKG
Subjt:  RNLYIITAKYIKGHLNKLPLACVGDMAVETKKKGKPDLKKKILPNVSGNASHGSKRM--------GCSRVIVNPKGEMKG

Arabidopsis top hits

e value

%identity

Alignment

AT1G04480.1 Ribosomal protein L14p/L23e family protein

6.7e-15

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Query:  RNLYIITAKYIKGHLNKLPLACVGDMAVETKKKGKPDLKKKILPNVSGNASHGSKRM--------GCSRVIVNPKGEMKG
        +NLYII+ K IKG LN+LP ACVGDM + T KKGKPDL+KK+LP V        +R           + VIVNPKGEMKG
Subjt:  RNLYIITAKYIKGHLNKLPLACVGDMAVETKKKGKPDLKKKILPNVSGNASHGSKRM--------GCSRVIVNPKGEMKG

AT2G33370.1 Ribosomal protein L14p/L23e family protein

6.7e-15

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Query:  RNLYIITAKYIKGHLNKLPLACVGDMAVETKKKGKPDLKKKILPNVSGNASHGSKRM--------GCSRVIVNPKGEMKG
        +NLYII+ K IKG LN+LP ACVGDM + T KKGKPDL+KK+LP V        +R           + VIVNPKGEMKG
Subjt:  RNLYIITAKYIKGHLNKLPLACVGDMAVETKKKGKPDLKKKILPNVSGNASHGSKRM--------GCSRVIVNPKGEMKG

AT3G04400.1 Ribosomal protein L14p/L23e family protein

6.7e-15

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Query:  RNLYIITAKYIKGHLNKLPLACVGDMAVETKKKGKPDLKKKILPNVSGNASHGSKRM--------GCSRVIVNPKGEMKG
        +NLYII+ K IKG LN+LP ACVGDM + T KKGKPDL+KK+LP V        +R           + VIVNPKGEMKG
Subjt:  RNLYIITAKYIKGHLNKLPLACVGDMAVETKKKGKPDLKKKILPNVSGNASHGSKRM--------GCSRVIVNPKGEMKG

AT3G04400.2 Ribosomal protein L14p/L23e family protein

6.7e-15

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Query:  RNLYIITAKYIKGHLNKLPLACVGDMAVETKKKGKPDLKKKILPNVSGNASHGSKRM--------GCSRVIVNPKGEMKG
        +NLYII+ K IKG LN+LP ACVGDM + T KKGKPDL+KK+LP V        +R           + VIVNPKGEMKG
Subjt:  RNLYIITAKYIKGHLNKLPLACVGDMAVETKKKGKPDLKKKILPNVSGNASHGSKRM--------GCSRVIVNPKGEMKG

Sequences

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CDS sequence

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ATGGTCCAGTACCATAGCCCACACTTCGTTCTACCCAAGAGCTCCATTTCACACAAAAGGAGGAGACGAAACGAGACATCCGATATAGAATCCAATCTTAATCAAGGGCA
TCATAGTTACCTTCAATTCAAGTTTTGGGCCTTGGCTTTGCAAGACTCTTCTGATGTTAAAGTTATTCAAAGTGGTGTTGCCAAAAGGTGGATTCTCTATAGCAGTTGCT
TGCAGGCCGTCTTTATGATGTTGATTGTTCTATCTCCTTTGAGGGAATTTACCGTAATGGTGGTAAAAGCCAATATTCATATTGAGCCATATTTTCCTTTGGACTGTAGA
GGTAAAAGCCATTGTCAACCTCTTAAGAAGGCGGCAAAAAAGCTGACCTCATCAAAAGATTCCTGTGGTGCAGTTCAATTGAAAGAAACCACCTTATTTTATAGGGTTGG
ATCTTTATGGAGCTCTTCAAATATTGCTTGGGCTACTTTGGACTTTACTGATGATATTGAACTTTCTCATTTCAACTGGGGAAAATGTCAAAACAAGCGTGCAAAGGATC
TACATGTAACAAGTTTGGGATGTCACTGGGTCTACCAATGGCAGCGATGGTATATTGTGCCAGCAACACAGGAGCCAAGAAACCTGTACATCATCACAGCAAAGTATATC
AAGGGACATTTGAACAAATTGCCATTGGCTTGTGTTGGAGACATGGCGGTGGAAACTAAAAAAAAGGGAAAGCCCGATCTCAAGAAGAAGATCCTTCCTAATGTGTCAGG
CAACGCAAGCCATGGCAGCAAAAGGATGGGGTGTTCACGAGTGATTGTGAACCCAAAAGGTGAAATGAAGGGTGTCCTATTGGATAGGAGTGTGCACATTTGTGGCCTAG
GATTGCAAGTGCAACCAATGCTATTGTTTAGTGTTCTTCTAGAGTTCAAATCTTATAGTAGGCAAGACTTGATCTCTCAACCTAGCACCTGTGGCATTGAATTGGTGCCC
CTCCACGTCACTAAGCCATTCTCTGGCTGTTTCTCATTTTCATATCTAAAAGTGTATTGCCTTAGTAGACTTCTCCATCATGGCATCAATTTGGGCACCTTCAACCTCAA
CACCAATGGCACAGACAAATATACTTTAATGGTTAACCACATTGAATTTGTCGATGACACATTAGTGTTCTCTTCACATGATCCATTGAACATTATGAACTTTTTTAATA
ACACCATGATCCTCAAAATGGCATCTGGTCTCAACAAAAATTATGGCAAGAGTGAAATGATGGGGATTAATATTCCTCCTAAGTCCCTTCAATACATTGTTGATACCCAT
GGGTGCAAGATGGAATTAGAAAGCATCATGCTTTCTAAATCTTTTCTTCCCTCTTCGTTGATTGTTACTTAA

mRNA sequence

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Protein sequence

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MVQYHSPHFVLPKSSISHKRRRRNETSDIESNLNQGHHSYLQFKFWALALQDSSDVKVIQSGVAKRWILYSSCLQAVFMMLIVLSPLREFTVMVVKANIHIEPYFPLDCR
GKSHCQPLKKAAKKLTSSKDSCGAVQLKETTLFYRVGSLWSSSNIAWATLDFTDDIELSHFNWGKCQNKRAKDLHVTSLGCHWVYQWQRWYIVPATQEPRNLYIITAKYI
KGHLNKLPLACVGDMAVETKKKGKPDLKKKILPNVSGNASHGSKRMGCSRVIVNPKGEMKGVLLDRSVHICGLGLQVQPMLLFSVLLEFKSYSRQDLISQPSTCGIELVP
LHVTKPFSGCFSFSYLKVYCLSRLLHHGINLGTFNLNTNGTDKYTLMVNHIEFVDDTLVFSSHDPLNIMNFFNNTMILKMASGLNKNYGKSEMMGINIPPKSLQYIVDTH
GCKMELESIMLSKSFLPSSLIVT

Clc10G15183 (gene) of Watermelon (cordophanus) v2 genome