| GenBank top hits | e value | %identity | Alignment |
|---|
| XP_004136650.1 DNA-directed RNA polymerase V subunit 5A [Cucumis sativus] | 1.1e-114 | 92.07 | Show/hide |
Query: MEEDGFEGEPNQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAV
MEEDGFE EPN VEFGTCLSSYID+GTTESHRYFLSRRTV+EML+DRGYT+NSP+ID SLQQFRE +GQ PDVDRLK+SA H SDPSKRVLV+FCGTGAV
Subjt: MEEDGFEGEPNQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAV
Query: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYY
KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPR+LRTDAIARYY
Subjt: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTRSHVTYRCVW
GLEKGQVVKVTYDGDMTR+H+TYRCVW
Subjt: GLEKGQVVKVTYDGDMTRSHVTYRCVW
|
|
| XP_008443287.1 PREDICTED: DNA-directed RNA polymerase V subunit 5A [Cucumis melo] | 1.1e-114 | 92.51 | Show/hide |
Query: MEEDGFEGEPNQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAV
MEEDGFE EPN VEFGTCLSSYID+GTTESHRYFLSRRTV+EML+DRGYT+NSPDIDLSLQQFR+I+GQ PDVDRLK+ A H SDPSKRVLV+FCGTGAV
Subjt: MEEDGFEGEPNQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAV
Query: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYY
KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPR+LRTDAIARYY
Subjt: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTRSHVTYRCVW
GLEKGQVVKVTYDGDMT +HVTYRCVW
Subjt: GLEKGQVVKVTYDGDMTRSHVTYRCVW
|
|
| XP_022158561.1 DNA-directed RNA polymerase V subunit 5A [Momordica charantia] | 9.5e-114 | 92.07 | Show/hide |
Query: MEEDGFEGEPNQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAV
MEEDGFEGEPN+VE GTCLSSYIDNG+TESHRYFL RRTVLEMLRDRGYT + D DL+LQQFREIYGQSPDVDRLK+SAVHRSDPSKR+LVIFCGTG+V
Subjt: MEEDGFEGEPNQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAV
Query: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYY
KVNAIRNIAGQI NKD+LHGLILIVQNQITNQAMKAV+LFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPR+LRTDAIARYY
Subjt: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTRSHVTYRCVW
GLEKGQVVKVTYDGDMT SHVTYRCVW
Subjt: GLEKGQVVKVTYDGDMTRSHVTYRCVW
|
|
| XP_023539155.1 DNA-directed RNA polymerase V subunit 5A [Cucurbita pepo subsp. pepo] | 1.2e-111 | 89.87 | Show/hide |
Query: MEEDGFEGEPNQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAV
MEEDGF GEPN+VE GTCLSSYID+GTTESHRY+LSRRTVLEMLRDRGYT+N DIDL+LQQFREIYGQ PDVDRLK+SA H +DPSKR+LVIFCGTGAV
Subjt: MEEDGFEGEPNQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAV
Query: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYY
KV+AIRNIAGQI NK++LHGLILIVQNQITNQAMKAVE+FSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLL+QYSIEEKQLPR+LRTDAIARYY
Subjt: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTRSHVTYRCVW
GLEKGQ+VKVTYDGDMTRSHVTYRCVW
Subjt: GLEKGQVVKVTYDGDMTRSHVTYRCVW
|
|
| XP_038903402.1 DNA-directed RNA polymerase V subunit 5A [Benincasa hispida] | 5.7e-119 | 96.48 | Show/hide |
Query: MEEDGFEGEPNQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAV
MEEDGFEGEPN+VEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNS DIDLSLQQFREIYGQSPDVDRLK+SAVHRSDPSKRVLVIFCGTGAV
Subjt: MEEDGFEGEPNQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAV
Query: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYY
KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVL+EEEKQKLL+QYSIEEKQLPR+LR DA+ARYY
Subjt: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTRSHVTYRCVW
GLEKGQVVKVTYDGDMTRSHVTYRCVW
Subjt: GLEKGQVVKVTYDGDMTRSHVTYRCVW
|
|
| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A0A0LCG9 Uncharacterized protein | 5.4e-115 | 92.07 | Show/hide |
Query: MEEDGFEGEPNQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAV
MEEDGFE EPN VEFGTCLSSYID+GTTESHRYFLSRRTV+EML+DRGYT+NSP+ID SLQQFRE +GQ PDVDRLK+SA H SDPSKRVLV+FCGTGAV
Subjt: MEEDGFEGEPNQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAV
Query: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYY
KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPR+LRTDAIARYY
Subjt: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTRSHVTYRCVW
GLEKGQVVKVTYDGDMTR+H+TYRCVW
Subjt: GLEKGQVVKVTYDGDMTRSHVTYRCVW
|
|
| A0A1S3B7M5 DNA-directed RNA polymerase V subunit 5A | 5.4e-115 | 92.51 | Show/hide |
Query: MEEDGFEGEPNQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAV
MEEDGFE EPN VEFGTCLSSYID+GTTESHRYFLSRRTV+EML+DRGYT+NSPDIDLSLQQFR+I+GQ PDVDRLK+ A H SDPSKRVLV+FCGTGAV
Subjt: MEEDGFEGEPNQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAV
Query: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYY
KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPR+LRTDAIARYY
Subjt: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTRSHVTYRCVW
GLEKGQVVKVTYDGDMT +HVTYRCVW
Subjt: GLEKGQVVKVTYDGDMTRSHVTYRCVW
|
|
| A0A6J1E191 DNA-directed RNA polymerase V subunit 5A | 4.6e-114 | 92.07 | Show/hide |
Query: MEEDGFEGEPNQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAV
MEEDGFEGEPN+VE GTCLSSYIDNG+TESHRYFL RRTVLEMLRDRGYT + D DL+LQQFREIYGQSPDVDRLK+SAVHRSDPSKR+LVIFCGTG+V
Subjt: MEEDGFEGEPNQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAV
Query: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYY
KVNAIRNIAGQI NKD+LHGLILIVQNQITNQAMKAV+LFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPR+LRTDAIARYY
Subjt: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTRSHVTYRCVW
GLEKGQVVKVTYDGDMT SHVTYRCVW
Subjt: GLEKGQVVKVTYDGDMTRSHVTYRCVW
|
|
| A0A6J1GH86 DNA-directed RNA polymerase V subunit 5A isoform X2 | 1.2e-111 | 89.87 | Show/hide |
Query: MEEDGFEGEPNQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAV
MEEDGF GEPN+VE GTCLSSYID+GTTESHRY+LSRRTVLEMLRDRGYT+N DIDL+LQQFREIYGQ DVDRLK+SA HR+DPSKR+LVIFCGTGAV
Subjt: MEEDGFEGEPNQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAV
Query: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYY
KV+AIRNIAGQI NK++LHGLILIVQNQITNQAMKAVE+FSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLL+QYSIEEKQLPR+LRTDAIARYY
Subjt: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTRSHVTYRCVW
GLEKGQ+VKVTYDGDMTRSHVTYRCVW
Subjt: GLEKGQVVKVTYDGDMTRSHVTYRCVW
|
|
| A0A6J1I733 DNA-directed RNA polymerase V subunit 5A isoform X2 | 7.3e-112 | 89.87 | Show/hide |
Query: MEEDGFEGEPNQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAV
MEEDGF GEPN+VE GTCLSSYID+GTTESHRY+LSRRTVLEMLRDRGYT+N DIDL+LQQFREIYGQ PDVDRLK+SA HR+DPSKR+LVIFCGTGAV
Subjt: MEEDGFEGEPNQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAV
Query: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYY
KV+AIRNIAGQI NK++LHGLILIVQNQITNQAMKAVE+FSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLL+QYSIEEKQLPR+LRTDAIARYY
Subjt: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTRSHVTYRCVW
LEKGQ+VKVTYDGDMTRSHVTYRCVW
Subjt: GLEKGQVVKVTYDGDMTRSHVTYRCVW
|
|
| SwissProt top hits | e value | %identity | Alignment |
|---|
| A8XGH1 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 1.3e-28 | 34.15 | Show/hide |
Query: ESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDR-----LKISAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLHGLIL
E++R + R+TVL+M+ DRGY + ++D L+ F+E +G P + L I H DP+ ++ V F + + I+ I Q+ + ++ I+
Subjt: ESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDR-----LKISAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLHGLIL
Query: IVQNQITNQAMKAVELFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYYGLEKGQVVKVTYDGDMTRSHV
+VQ +T A +++ + + +E F +L+VNIT+H L P H V+T EEK +LL +Y +++ QLPR+ + D +ARY+GL +GQVVK+ + ++
Subjt: IVQNQITNQAMKAVELFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYYGLEKGQVVKVTYDGDMTRSHV
Query: TYRCV
TYR V
Subjt: TYRCV
|
|
| O81098 DNA-directed RNA polymerases II and IV subunit 5A | 7.5e-29 | 36.5 | Show/hide |
Query: ESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQ
E R + ++T+++MLRDRGY + ++ ++ QQF +G + + L R+D S ++ + F V V ++ ++ +++ IL+VQ
Subjt: ESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQ
Query: ITNQAMKAVELFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYYGLEKGQVVKVTYDGDMTRSHVTYRCV
+T A + S F +E+FQ ++LVNI +H L P HQVLT EEK+ LL++Y+++E QLPR+ TD IARY+GL++GQVVK+ + +VTYR V
Subjt: ITNQAMKAVELFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYYGLEKGQVVKVTYDGDMTRSHVTYRCV
|
|
| Q9M1H8 DNA-directed RNA polymerase V subunit 5C | 4.8e-52 | 45.13 | Show/hide |
Query: EEDGFEGEPNQVEFGT-CLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAV
EE E + + GT C+S D G ES R++L+R T EMLRDRGY +N ++ L+L +FR ++G+ P+++RL+I RSDP K++LV+F GT +
Subjt: EEDGFEGEPNQVEFGT-CLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAV
Query: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYY
V ++R + QI+N LH +IL++Q+++ + A KA+ F F VE F I DLLVNITKH +P ++L +EEK++LL+++++E+KQLP L D+ RYY
Subjt: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTRSHVTYRCV
GL+K QVVK+TY + VTYRC+
Subjt: GLEKGQVVKVTYDGDMTRSHVTYRCV
|
|
| Q9M1J2 DNA-directed RNA polymerase V subunit 5A | 5.1e-78 | 65.71 | Show/hide |
Query: CLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDS
CLS Y+D + ESHRY+L+RR L+MLRDRGY ++ DI+LSL FR +YG+ PDVDRL+ISA+HRSD +K+V ++F GT VKVNAIR++ I ++++
Subjt: CLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDS
Query: LHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYYGLEKGQVVKVTYDGDMT
+ GLIL++QN +TNQA+KA+ELFSFKVEIFQITDLLVNITKH+LKP HQVL +EEK LLK++SIEEKQLPR+ + DAI RYYGLEKGQVVKV Y G++T
Subjt: LHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYYGLEKGQVVKVTYDGDMT
Query: RSHVTYRCVW
SHV +RCVW
Subjt: RSHVTYRCVW
|
|
| Q9ZVB9 DNA-directed RNA polymerases IV and V subunit 5B | 5.5e-72 | 60 | Show/hide |
Query: EGEPNQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAVKVNAIR
EG+ ++ G +S + E H+Y+L+RRT +EMLRDRGY ++ DI+LSLQQFR +YG+ PDVD L+ISA HR D SK++ V+FCGTG VKVNA+R
Subjt: EGEPNQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAVKVNAIR
Query: NIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYYGLEKGQ
IA + +++++ GLIL++Q+ ITNQA+KAVELFSFKVE+F+ITDLLVN++KH L+P HQVL ++EK+ LLK++SIEEKQLPRL D I RYYGLE GQ
Subjt: NIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYYGLEKGQ
Query: VVKVTYDGDMTRSHVTYRCV
V+KVTY +++ SHVTYRCV
Subjt: VVKVTYDGDMTRSHVTYRCV
|
|
| Arabidopsis top hits | e value | %identity | Alignment |
|---|
| AT2G41340.1 RNA polymerase II fifth largest subunit, D | 3.9e-73 | 60 | Show/hide |
Query: EGEPNQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAVKVNAIR
EG+ ++ G +S + E H+Y+L+RRT +EMLRDRGY ++ DI+LSLQQFR +YG+ PDVD L+ISA HR D SK++ V+FCGTG VKVNA+R
Subjt: EGEPNQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAVKVNAIR
Query: NIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYYGLEKGQ
IA + +++++ GLIL++Q+ ITNQA+KAVELFSFKVE+F+ITDLLVN++KH L+P HQVL ++EK+ LLK++SIEEKQLPRL D I RYYGLE GQ
Subjt: NIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYYGLEKGQ
Query: VVKVTYDGDMTRSHVTYRCV
V+KVTY +++ SHVTYRCV
Subjt: VVKVTYDGDMTRSHVTYRCV
|
|
| AT3G22320.1 Eukaryotic rpb5 RNA polymerase subunit family protein | 5.3e-30 | 36.5 | Show/hide |
Query: ESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQ
E R + ++T+++MLRDRGY + ++ ++ QQF +G + + L R+D S ++ + F V V ++ ++ +++ IL+VQ
Subjt: ESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQ
Query: ITNQAMKAVELFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYYGLEKGQVVKVTYDGDMTRSHVTYRCV
+T A + S F +E+FQ ++LVNI +H L P HQVLT EEK+ LL++Y+++E QLPR+ TD IARY+GL++GQVVK+ + +VTYR V
Subjt: ITNQAMKAVELFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYYGLEKGQVVKVTYDGDMTRSHVTYRCV
|
|
| AT3G54490.1 RNA polymerase II fifth largest subunit, E | 3.4e-53 | 45.13 | Show/hide |
Query: EEDGFEGEPNQVEFGT-CLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAV
EE E + + GT C+S D G ES R++L+R T EMLRDRGY +N ++ L+L +FR ++G+ P+++RL+I RSDP K++LV+F GT +
Subjt: EEDGFEGEPNQVEFGT-CLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAV
Query: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYY
V ++R + QI+N LH +IL++Q+++ + A KA+ F F VE F I DLLVNITKH +P ++L +EEK++LL+++++E+KQLP L D+ RYY
Subjt: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTRSHVTYRCV
GL+K QVVK+TY + VTYRC+
Subjt: GLEKGQVVKVTYDGDMTRSHVTYRCV
|
|
| AT3G57080.1 Eukaryotic rpb5 RNA polymerase subunit family protein | 3.6e-79 | 65.71 | Show/hide |
Query: CLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDS
CLS Y+D + ESHRY+L+RR L+MLRDRGY ++ DI+LSL FR +YG+ PDVDRL+ISA+HRSD +K+V ++F GT VKVNAIR++ I ++++
Subjt: CLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDS
Query: LHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYYGLEKGQVVKVTYDGDMT
+ GLIL++QN +TNQA+KA+ELFSFKVEIFQITDLLVNITKH+LKP HQVL +EEK LLK++SIEEKQLPR+ + DAI RYYGLEKGQVVKV Y G++T
Subjt: LHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYYGLEKGQVVKVTYDGDMT
Query: RSHVTYRCVW
SHV +RCVW
Subjt: RSHVTYRCVW
|
|
| AT5G57980.1 RNA polymerase II fifth largest subunit, C | 3.2e-27 | 35.82 | Show/hide |
Query: ESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQS---PDVDRLKISAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLHGLILIV
E R F RRTVL+MLRDRGYT+ D++L ++F + + ++ + + L +SA +P+ ++ V + V V I+ D +H I++V
Subjt: ESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQS---PDVDRLKISAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLHGLILIV
Query: QNQITNQAMKAVELFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYYGLEKGQVVKVTYDGDMTRSHVTY
IT A AV + +E+F+ +L+ NIT+H L + VL ++ K+KLL Y++++ QLPR+L TD +ARYYGL++GQVVK+ + + TY
Subjt: QNQITNQAMKAVELFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYYGLEKGQVVKVTYDGDMTRSHVTY
Query: R
R
Subjt: R
|
|
