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Clc10G15680 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc10G15680
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionVQ domain-containing protein
Genome locationClcChr10:29407646..29408643
RNA-Seq ExpressionClc10G15680
SyntenyClc10G15680
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8651179.1 hypothetical protein Csa_002123, partial [Cucumis sativus]1.3e-3585.86Show/hide
Query:  MRVHTSASEFRALVQELTGRDAEFPDPSKFYPA-SCEIMN--DLEKKVV-AEGEEDEQVLLLDSSCDDDFFRSSYESFEDILRKDLMENLGAISTSLLN
        MRVHTSASEFRALVQELTGRDAEFPDP+KFYPA SCEIMN  D+EKKVV AEGEEDEQ LL+DSSCDDDF RSSYES EDILR+D+MEN GAISTSL N
Subjt:  MRVHTSASEFRALVQELTGRDAEFPDPSKFYPA-SCEIMN--DLEKKVV-AEGEEDEQVLLLDSSCDDDFFRSSYESFEDILRKDLMENLGAISTSLLN

XP_008443611.1 PREDICTED: uncharacterized protein LOC103487167 [Cucumis melo]1.5e-5584.72Show/hide
Query:  MDRSLVVSEVTAATTTAKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEI-MNDLEKKVVA-EGEEDEQV
        MDR+L+VSE+T  TTT KKKTTRKRKSC+E KQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEI MNDLEKKVVA +GE+DEQ 
Subjt:  MDRSLVVSEVTAATTTAKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEI-MNDLEKKVVA-EGEEDEQV

Query:  LLLDSSCDDDFFRSSYESFEDILRKDLMENLGAISTSLLNYPLV
        LL+DSSCDDDF+RSS+ES EDILR+D+MEN GAISTSL+N PLV
Subjt:  LLLDSSCDDDFFRSSYESFEDILRKDLMENLGAISTSLLNYPLV

XP_011652185.1 uncharacterized protein LOC105434994 [Cucumis sativus]2.6e-5283.11Show/hide
Query:  MDRSLVVSEVTAATTTAKK--KTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPA-SCEIMN--DLEKKVV-AEGEE
        MDRSL+VSE+   TTT KK  KTTRKRKSC+E KQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP+KFYPA SCEIMN  D+EKKVV AEGEE
Subjt:  MDRSLVVSEVTAATTTAKK--KTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPA-SCEIMN--DLEKKVV-AEGEE

Query:  DEQVLLLDSSCDDDFFRSSYESFEDILRKDLMENLGAISTSLLNYPLV
        DEQ LL+DSSCDDDF RSSYES EDILR+D+MEN GAISTSL N PLV
Subjt:  DEQVLLLDSSCDDDFFRSSYESFEDILRKDLMENLGAISTSLLNYPLV

XP_022147780.1 sigma factor binding protein 2, chloroplastic-like [Momordica charantia]2.9e-2756.76Show/hide
Query:  MDRSLVVSEVTAATTTAKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMN-DLEKKVVAEGEEDEQ--
        MDR+L+VSE+        KK TRKRK   +K QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP+KF+ AS ++   +LEK    EG++DE+  
Subjt:  MDRSLVVSEVTAATTTAKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMN-DLEKKVVAEGEEDEQ--

Query:  --VLLLDSSCDDDFFRSSYESFEDIL-RKDLMENLGAISTSLLNYPLV
          V       +DDF  S YESFE++L R+ LMEN    S S+ +  LV
Subjt:  --VLLLDSSCDDDFFRSSYESFEDIL-RKDLMENLGAISTSLLNYPLV

XP_023539403.1 uncharacterized protein LOC111800056 [Cucurbita pepo subsp. pepo]6.0e-1747.48Show/hide
Query:  MDRSLVVSEVTAATTTAKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMNDLEKKVVAEGEEDEQVLL
        M+ SLV  +V       +K+  RKRK CD K QPLKVVYISNPMRV  SA+EFR LVQ+LTG+DA    PS    AS E      +K+  + ++D+Q LL
Subjt:  MDRSLVVSEVTAATTTAKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMNDLEKKVVAEGEEDEQVLL

Query:  L--------DSSCDDDFFRSSYESFEDILRKDLMENLGA
        L        DSS  DDF   SYES E I  +D+++ L A
Subjt:  L--------DSSCDDDFFRSSYESFEDILRKDLMENLGA

TrEMBL top hitse value%identityAlignment
A0A0A0LFH5 VQ domain-containing protein1.3e-5283.11Show/hide
Query:  MDRSLVVSEVTAATTTAKK--KTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPA-SCEIMN--DLEKKVV-AEGEE
        MDRSL+VSE+   TTT KK  KTTRKRKSC+E KQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP+KFYPA SCEIMN  D+EKKVV AEGEE
Subjt:  MDRSLVVSEVTAATTTAKK--KTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPA-SCEIMN--DLEKKVV-AEGEE

Query:  DEQVLLLDSSCDDDFFRSSYESFEDILRKDLMENLGAISTSLLNYPLV
        DEQ LL+DSSCDDDF RSSYES EDILR+D+MEN GAISTSL N PLV
Subjt:  DEQVLLLDSSCDDDFFRSSYESFEDILRKDLMENLGAISTSLLNYPLV

A0A1S3B8H6 uncharacterized protein LOC1034871677.1e-5684.72Show/hide
Query:  MDRSLVVSEVTAATTTAKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEI-MNDLEKKVVA-EGEEDEQV
        MDR+L+VSE+T  TTT KKKTTRKRKSC+E KQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEI MNDLEKKVVA +GE+DEQ 
Subjt:  MDRSLVVSEVTAATTTAKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEI-MNDLEKKVVA-EGEEDEQV

Query:  LLLDSSCDDDFFRSSYESFEDILRKDLMENLGAISTSLLNYPLV
        LL+DSSCDDDF+RSS+ES EDILR+D+MEN GAISTSL+N PLV
Subjt:  LLLDSSCDDDFFRSSYESFEDILRKDLMENLGAISTSLLNYPLV

A0A5D3DPQ4 Sigma factor binding protein 27.1e-5684.72Show/hide
Query:  MDRSLVVSEVTAATTTAKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEI-MNDLEKKVVA-EGEEDEQV
        MDR+L+VSE+T  TTT KKKTTRKRKSC+E KQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEI MNDLEKKVVA +GE+DEQ 
Subjt:  MDRSLVVSEVTAATTTAKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEI-MNDLEKKVVA-EGEEDEQV

Query:  LLLDSSCDDDFFRSSYESFEDILRKDLMENLGAISTSLLNYPLV
        LL+DSSCDDDF+RSS+ES EDILR+D+MEN GAISTSL+N PLV
Subjt:  LLLDSSCDDDFFRSSYESFEDILRKDLMENLGAISTSLLNYPLV

A0A6J1D137 sigma factor binding protein 2, chloroplastic-like1.4e-2756.76Show/hide
Query:  MDRSLVVSEVTAATTTAKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMN-DLEKKVVAEGEEDEQ--
        MDR+L+VSE+        KK TRKRK   +K QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDP+KF+ AS ++   +LEK    EG++DE+  
Subjt:  MDRSLVVSEVTAATTTAKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMN-DLEKKVVAEGEEDEQ--

Query:  --VLLLDSSCDDDFFRSSYESFEDIL-RKDLMENLGAISTSLLNYPLV
          V       +DDF  S YESFE++L R+ LMEN    S S+ +  LV
Subjt:  --VLLLDSSCDDDFFRSSYESFEDIL-RKDLMENLGAISTSLLNYPLV

A0A803QPK7 Uncharacterized protein4.6e-1544.36Show/hide
Query:  KKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMNDLEKKVVAEGEEDEQV-LLLDSS----------CDD
        K   + +KS +++K P+KVVYISNPM+V TSASEFRALVQELTG+DAEFPDP+KF  A  E     E      G ED  V L+++SS            +
Subjt:  KKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMNDLEKKVVAEGEEDEQV-LLLDSS----------CDD

Query:  DFFRSSYESF-EDILRKDLMENLGAISTSLLNY
        +   S YE F +D+    +M++L  I  S + Y
Subjt:  DFFRSSYESF-EDILRKDLMENLGAISTSLLNY

SwissProt top hitse value%identityAlignment
O80669 Sigma factor binding protein 2, chloroplastic2.2e-0635.65Show/hide
Query:  MDRS---LVVSEVTAATTTAKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMNDLEKKVVAEGEEDEQ
        MD+S   L++++  ++++  +    +KRKS    K P+KV YISNPMRV T  S+FR LVQELTG+DA    PS     + ++    E ++  E  + E 
Subjt:  MDRS---LVVSEVTAATTTAKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMNDLEKKVVAEGEEDEQ

Query:  VLLLDSSCDDDFFRS
             S  D++ F +
Subjt:  VLLLDSSCDDDFFRS

Q9LDH1 Sigma factor binding protein 1, chloroplastic5.3e-0848.81Show/hide
Query:  SEVTAATTTA---KKKTTRKRKSCDEKK------QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMN
        S  T  TTT+   KK +   RKS  +KK      +P+KV YISNPMRV T AS+FR LVQELTG+DA    P   Y  S +  N
Subjt:  SEVTAATTTA---KKKTTRKRKSCDEKK------QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMN

Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein1.6e-0735.65Show/hide
Query:  MDRS---LVVSEVTAATTTAKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMNDLEKKVVAEGEEDEQ
        MD+S   L++++  ++++  +    +KRKS    K P+KV YISNPMRV T  S+FR LVQELTG+DA    PS     + ++    E ++  E  + E 
Subjt:  MDRS---LVVSEVTAATTTAKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMNDLEKKVVAEGEEDEQ

Query:  VLLLDSSCDDDFFRS
             S  D++ F +
Subjt:  VLLLDSSCDDDFFRS

AT3G56710.1 sigma factor binding protein 13.8e-0948.81Show/hide
Query:  SEVTAATTTA---KKKTTRKRKSCDEKK------QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMN
        S  T  TTT+   KK +   RKS  +KK      +P+KV YISNPMRV T AS+FR LVQELTG+DA    P   Y  S +  N
Subjt:  SEVTAATTTA---KKKTTRKRKSCDEKK------QPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCGGAGTTTAGTGGTAAGTGAGGTGACGGCGGCAACGACGACGGCAAAGAAGAAAACAACACGAAAAAGGAAATCATGCGATGAAAAGAAGCAACCCCTA
AAAGTTGTGTACATATCCAACCCCATGAGGGTTCATACTAGCGCGTCTGAATTTAGAGCCTTAGTCCAAGAACTAACCGGGCGAGATGCCGAGTTTCCCGACCCG
AGTAAGTTCTATCCGGCGTCGTGCGAGATCATGAATGATCTTGAGAAGAAAGTAGTAGCAGAAGGAGAGGAAGATGAGCAAGTGTTATTACTTGATTCAAGCTGT
GATGATGATTTTTTTAGGAGTTCATATGAAAGCTTCGAAGATATTTTGAGGAAAGATCTGATGGAGAACTTGGGGGCCATCTCTACATCACTGCTCAATTATCCT
TTGGTTTAG
mRNA sequenceShow/hide mRNA sequence
GAGGGAAACTCTTTTAGAAATTTCGAAGGAAAAAGAAAAAAAACCGATTTCATATAGTATTGTATAACCTAAAAATGTGGCAAAAGGTAGATGGTAACTTTTGAA
ACAATATGACTATTTTCATAGAGAAGACAAAAGCCAATGGATTTTTTTTTTCTTTTTCTTTTTTTTTTCTGTAATGTAACCTTTATTTCCTCCTTTACTTTCCAA
GAAACCTCCTACTTACAATTTTGCAGCCACCAAACACATTTCTCCCCCATAAATCCACCCCCCAAAATTGCCTTTTTTTTCTCGAACCCGAACTCGAAAAAAGAA
AGGAAAAAATGGATCGGAGTTTAGTGGTAAGTGAGGTGACGGCGGCAACGACGACGGCAAAGAAGAAAACAACACGAAAAAGGAAATCATGCGATGAAAAGAAGC
AACCCCTAAAAGTTGTGTACATATCCAACCCCATGAGGGTTCATACTAGCGCGTCTGAATTTAGAGCCTTAGTCCAAGAACTAACCGGGCGAGATGCCGAGTTTC
CCGACCCGAGTAAGTTCTATCCGGCGTCGTGCGAGATCATGAATGATCTTGAGAAGAAAGTAGTAGCAGAAGGAGAGGAAGATGAGCAAGTGTTATTACTTGATT
CAAGCTGTGATGATGATTTTTTTAGGAGTTCATATGAAAGCTTCGAAGATATTTTGAGGAAAGATCTGATGGAGAACTTGGGGGCCATCTCTACATCACTGCTCA
ATTATCCTTTGGTTTAGTACTAATTAAGGTTTAATCTTTATTCTCATTATAAATCTTCATCTAATTTAGCTATCTTCAACCTTAATTTATGTCCAAAAATAAATG
AAAAGCACAATATTGTAATGTGTATGTTTGCTCACTCTATAATAATCCATCTAACACAAAAATTTTAGATTCAGTGCTTCTCTCTAGCTATATTTCTTTTAAGTT
ACATCATAATTTATAGGCTAAATCATTAAATAAATAAAGCCTTTTAACTTTGC
Protein sequenceShow/hide protein sequence
MDRSLVVSEVTAATTTAKKKTTRKRKSCDEKKQPLKVVYISNPMRVHTSASEFRALVQELTGRDAEFPDPSKFYPASCEIMNDLEKKVVAEGEEDEQVLLLDSSC
DDDFFRSSYESFEDILRKDLMENLGAISTSLLNYPLV