CuGenDBv2

Gene ID	Clc10G16280
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	ribosome production factor 1-like
Genome location	ClcChr10:30035523..30039925
RNA-Seq Expression	Clc10G16280
Synteny	Clc10G16280
Gene Ontology terms	GO:0000460 - maturation of 5.8S rRNA (biological process) GO:0000470 - maturation of LSU-rRNA (biological process) GO:0005730 - nucleolus (cellular component) GO:0030687 - preribosome, large subunit precursor (cellular component) GO:0042134 - rRNA primary transcript binding (molecular function)
InterPro domains	IPR007109 - Brix domain IPR044281 - U3 snoRNP protein/Ribosome production factor 1

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008443155.1 PREDICTED: ribosome production factor 1 isoform X1 [Cucumis melo]

5.8e-180

97.29

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Query:  MGEEKKNKGIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD
        MGEEKKNKGIIPSMIKNKEKRAEVHANLK+QKKLEKR+RAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD
Subjt:  MGEEKKNKGIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD

Query:  ILPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVVLRKDIKNHGNPT
        ILPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLP+GPTAHFKISNVVLRKDIKNHGNPT
Subjt:  ILPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVVLRKDIKNHGNPT

Query:  SHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVATFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKL
         HQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRV TFHNQRDFIFFRHHRYIFESKENKKE+DSK KSKDTKGEKV QQKV+ARLQECGPRFTMKL
Subjt:  SHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVATFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKL

Query:  ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
        ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Subjt:  ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL

XP_022155906.1 ribosome production factor 1-like [Momordica charantia]

1.3e-171

93.09

Show/hide

Query:  MGEEKKNK-GIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR
        MGEEKKNK  IIPSMIKNKEKR EVHANLK QKKLEKR+RAKARDA+EKQALELGEE PPR IPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR
Subjt:  MGEEKKNK-GIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR

Query:  DILPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVVLRKDIKNHGNP
          LPKVLITTCRFNS+IGP+FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLP+GPTAHFKISNVVLRKDIKNHGNP
Subjt:  DILPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVVLRKDIKNHGNP

Query:  TSHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVATFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMK
        TSH+PELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRV TFHNQRDF+FFRHHRYIF+SKENKKE+DSK+ SKD KGEKV QQKV+ARLQECGPRFTMK
Subjt:  TSHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVATFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMK

Query:  LISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
        LISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Subjt:  LISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL

XP_022156150.1 ribosome production factor 1-like [Momordica charantia]

1.0e-171

93.39

Show/hide

Query:  MGEEKKNK-GIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR
        MGEEKKNK  IIPSMIKNKEKR EVHANLK QKKLEKR+RAKARDA+EKQALELGEE PPR IPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR
Subjt:  MGEEKKNK-GIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR

Query:  DILPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVVLRKDIKNHGNP
          LPKVLITTCRFNSTIGP+FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLP+GPTAHFKISNVVLRKDIKNHGNP
Subjt:  DILPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVVLRKDIKNHGNP

Query:  TSHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVATFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMK
        TSH+PELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRV TFHNQRDFIFFRHHRYIF+SKENKKE+DSK+ SKD KGEKV +QKV+ARLQECGPRFTMK
Subjt:  TSHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVATFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMK

Query:  LISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
        LISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Subjt:  LISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL

XP_031737500.1 ribosome production factor 1 [Cucumis sativus]

1.3e-176

95.18

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Query:  MGEEKKNKGIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD
        MGEEKKNK I+PS IKNKEKRAEVHANLK+QKKLEKR+RAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD
Subjt:  MGEEKKNKGIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD

Query:  ILPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVVLRKDIKNHGNPT
        ILPK+LITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKI+EYANAKDFTSLMVVHTSRRKLDGLLIIGLP+GPTAHFKISNVVLRK+IKNHGNPT
Subjt:  ILPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVVLRKDIKNHGNPT

Query:  SHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVATFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKL
         HQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRV TFHNQRDFIFFRHHRYIFESKENKKE+DSK KSK TKGEKV QQKV+ARLQECGPRFTMKL
Subjt:  SHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVATFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKL

Query:  ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
        ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Subjt:  ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL

XP_038906205.1 ribosome production factor 1 [Benincasa hispida]

2.4e-178

95.78

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Query:  MGEEKKNKGIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD
        MGEE KN+GIIPSMIKNKEKRAEVHANLKNQKKLEKR+RAKARDAAEKQALELGEELPPRKIPRTIENTREVDET+CKPDDEELFAGNDADEFSSIIKR+
Subjt:  MGEEKKNKGIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD

Query:  ILPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVVLRKDIKNHGNPT
        ILPKVLITTCRFNSTIGP FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLP+GPTAHFKISNVVLRKDIKNHGNPT
Subjt:  ILPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVVLRKDIKNHGNPT

Query:  SHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVATFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKL
        SHQPELVLTNFTTRLGLR+GRLIQ+LFPQDPNFRGRRV TFHNQRDFIFFRHHRYIFESKENKKE+DSK KSKDTKGEKV QQKV+ARLQECGPRFTMKL
Subjt:  SHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVATFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKL

Query:  ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
        ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Subjt:  ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LH42 Brix domain-containing protein

6.5e-177

95.18

Show/hide

Query:  MGEEKKNKGIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD
        MGEEKKNK I+PS IKNKEKRAEVHANLK+QKKLEKR+RAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD
Subjt:  MGEEKKNKGIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD

Query:  ILPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVVLRKDIKNHGNPT
        ILPK+LITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKI+EYANAKDFTSLMVVHTSRRKLDGLLIIGLP+GPTAHFKISNVVLRK+IKNHGNPT
Subjt:  ILPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVVLRKDIKNHGNPT

Query:  SHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVATFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKL
         HQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRV TFHNQRDFIFFRHHRYIFESKENKKE+DSK KSK TKGEKV QQKV+ARLQECGPRFTMKL
Subjt:  SHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVATFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKL

Query:  ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
        ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Subjt:  ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL

A0A1S3B854 ribosome production factor 1 isoform X1

2.8e-180

97.29

Show/hide

Query:  MGEEKKNKGIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD
        MGEEKKNKGIIPSMIKNKEKRAEVHANLK+QKKLEKR+RAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD
Subjt:  MGEEKKNKGIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD

Query:  ILPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVVLRKDIKNHGNPT
        ILPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLP+GPTAHFKISNVVLRKDIKNHGNPT
Subjt:  ILPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVVLRKDIKNHGNPT

Query:  SHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVATFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKL
         HQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRV TFHNQRDFIFFRHHRYIFESKENKKE+DSK KSKDTKGEKV QQKV+ARLQECGPRFTMKL
Subjt:  SHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVATFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKL

Query:  ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
        ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Subjt:  ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL

A0A5A7UHC7 Ribosome production factor 1 isoform X1

2.8e-180

97.29

Show/hide

Query:  MGEEKKNKGIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD
        MGEEKKNKGIIPSMIKNKEKRAEVHANLK+QKKLEKR+RAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD
Subjt:  MGEEKKNKGIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRD

Query:  ILPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVVLRKDIKNHGNPT
        ILPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLP+GPTAHFKISNVVLRKDIKNHGNPT
Subjt:  ILPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVVLRKDIKNHGNPT

Query:  SHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVATFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKL
         HQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRV TFHNQRDFIFFRHHRYIFESKENKKE+DSK KSKDTKGEKV QQKV+ARLQECGPRFTMKL
Subjt:  SHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVATFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKL

Query:  ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
        ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Subjt:  ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL

A0A6J1DPH5 ribosome production factor 1-like

4.8e-172

93.39

Show/hide

Query:  MGEEKKNK-GIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR
        MGEEKKNK  IIPSMIKNKEKR EVHANLK QKKLEKR+RAKARDA+EKQALELGEE PPR IPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR
Subjt:  MGEEKKNK-GIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR

Query:  DILPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVVLRKDIKNHGNP
          LPKVLITTCRFNSTIGP+FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLP+GPTAHFKISNVVLRKDIKNHGNP
Subjt:  DILPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVVLRKDIKNHGNP

Query:  TSHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVATFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMK
        TSH+PELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRV TFHNQRDFIFFRHHRYIF+SKENKKE+DSK+ SKD KGEKV +QKV+ARLQECGPRFTMK
Subjt:  TSHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVATFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMK

Query:  LISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
        LISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Subjt:  LISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL

A0A6J1DT48 ribosome production factor 1-like

6.3e-172

93.09

Show/hide

Query:  MGEEKKNK-GIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR
        MGEEKKNK  IIPSMIKNKEKR EVHANLK QKKLEKR+RAKARDA+EKQALELGEE PPR IPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR
Subjt:  MGEEKKNK-GIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR

Query:  DILPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVVLRKDIKNHGNP
          LPKVLITTCRFNS+IGP+FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLP+GPTAHFKISNVVLRKDIKNHGNP
Subjt:  DILPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVVLRKDIKNHGNP

Query:  TSHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVATFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMK
        TSH+PELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRV TFHNQRDF+FFRHHRYIF+SKENKKE+DSK+ SKD KGEKV QQKV+ARLQECGPRFTMK
Subjt:  TSHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVATFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMK

Query:  LISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
        LISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Subjt:  LISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL

SwissProt top hits

e value

%identity

Alignment

Q5R631 Ribosome production factor 1

4.9e-73

47.55

Show/hide

Query:  GIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLIT
        G   S IKNKE+R   H      K+ +++ +  A+   +K+   LG++ PP+ +P+TI+N R  DET   P+DEE+      DEF+S   +   PK+LIT
Subjt:  GIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLIT

Query:  TCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVVLRKDIKNHG-NPTSHQPELV
        T             +L +VIPN+H Y R    LKKII    A+DFT L+V++  R+  +GL++  LP+GPTAHFK+S+V LRK+IK  G +PT H PE++
Subjt:  TCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVVLRKDIKNHG-NPTSHQPELV

Query:  LTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVATFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKLISLQHGT
        L NFTTRLG  +GR+  SLFP +P F GR+VATFHNQRD+IFFR HRYIF S++                           +QE GPRFT+KL SLQ GT
Subjt:  LTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVATFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKLISLQHGT

Query:  FDSKGGEYEWVHKP-EMDTSRRRFFL
        FDSK GEYEWVHKP EMDTSRR+F L
Subjt:  FDSKGGEYEWVHKP-EMDTSRRRFFL

Q6IQU6 Ribosome production factor 1

2.5e-72

49.38

Show/hide

Query:  SMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRF
        S IKNK++R  +   LK +K+ +KR   K +   E++AL+  ++ PP+++P+TIEN R  DET   P+DEE+      DEFS+   R   PKVLITT   
Subjt:  SMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRF

Query:  NSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVVLRKDIKNHG-NPTSHQPELVLTNF
               F  +L +VIP+A+ Y R    LKK+I    ++ FT LMV++  R+  +G+++  LPDGPTAHFK+S+V LRK++K  G NPT H PE++L NF
Subjt:  NSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVVLRKDIKNHG-NPTSHQPELVLTNF

Query:  TTRLGLRVGRLIQSLFPQDPNFRGRRVATFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKLISLQHGTFDSK
        TTRLG  +GRL  +LFP DP F GR+VATFHNQRDFIFFR HRYIF           KN+ K               +QE GPRFT+KL SLQ GTFDSK
Subjt:  TTRLGLRVGRLIQSLFPQDPNFRGRRVATFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKLISLQHGTFDSK

Query:  GGEYEWVHK-PEMDTSRRRFFL
         GEYEWVHK  EMD+SRR+F L
Subjt:  GGEYEWVHK-PEMDTSRRRFFL

Q7TND5 Ribosome production factor 1

1.1e-72

47.24

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Query:  GIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLIT
        G   S IKNK++R   H      K+ +++ +  A+   +K+   LG++ PP+ +P+TI+N R  DET   P+DEE+      DEF+S   R   PK+LIT
Subjt:  GIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLIT

Query:  TCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVVLRKDIKNHG-NPTSHQPELV
        T             +L +VIP++H Y R    LKKII    A+DFT L+V++  R+  +GL++  LP+GPTAHFK+S+V LRK+IK  G +PT H PE++
Subjt:  TCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVVLRKDIKNHG-NPTSHQPELV

Query:  LTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVATFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKLISLQHGT
        L NFTTRLG  +GR+  SLFP +P F GR+VATFHNQRD+IFFR HRYIF+S++                           +QE GPRFT+KL SLQ GT
Subjt:  LTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVATFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKLISLQHGT

Query:  FDSKGGEYEWVHKP-EMDTSRRRFFL
        FDSK GEYEWVHKP EMDTSRR+F L
Subjt:  FDSKGGEYEWVHKP-EMDTSRRRFFL

Q8AVP1 Ribosome production factor 1

4.9e-73

48.14

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Query:  SMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRF
        S IKNK++R  +   LK +K+ EK    K R   +K+   LG++ PP+ +P+TIEN R  DET   P DEE+      DEF+    +   PK+LITT   
Subjt:  SMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRF

Query:  NSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVVLRKDIKNHG-NPTSHQPELVLTNF
               F  +L S+IPN+  Y R    LKKII    ++D+T L+V++  R+  +GL++  LPDGPTAHFKISNV LRK++K  G  PT H+PE++L NF
Subjt:  NSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVVLRKDIKNHG-NPTSHQPELVLTNF

Query:  TTRLGLRVGRLIQSLFPQDPNFRGRRVATFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKLISLQHGTFDSK
        TTRLG  +GR+  SL+P DP+F GR+VATFHNQRD+IFFR+HRY+F+S++                           +QE GPRFT+KL SLQ GTFDSK
Subjt:  TTRLGLRVGRLIQSLFPQDPNFRGRRVATFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKLISLQHGTFDSK

Query:  GGEYEWVHK-PEMDTSRRRFFL
         GEYEWVHK  EMDTSRR+F L
Subjt:  GGEYEWVHK-PEMDTSRRRFFL

Q9H9Y2 Ribosome production factor 1

1.1e-72

47.24

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Query:  GIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLIT
        G   S IKNK++R   H      K+ +++ +  A+   +K+   LG++ PP+ +P+TI+N R  DET   P+DEE+      DEF+S   +   PK+LIT
Subjt:  GIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLIT

Query:  TCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVVLRKDIKNHG-NPTSHQPELV
        T             +L +VIPN+H Y R    LKKII    A+DFT L+V++  R+  +GL++  LP+GPTAHFK+S+V LRK+IK  G +PT H PE++
Subjt:  TCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVVLRKDIKNHG-NPTSHQPELV

Query:  LTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVATFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKLISLQHGT
        L NFTTRLG  +GR+  SLFP +P F GR+VATFHNQRD+IFFR HRYIF S++                           +QE GPRFT+KL SLQ GT
Subjt:  LTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVATFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKLISLQHGT

Query:  FDSKGGEYEWVHKP-EMDTSRRRFFL
        FDSK GEYEWVHKP EMDTSRR+F L
Subjt:  FDSKGGEYEWVHKP-EMDTSRRRFFL

Arabidopsis top hits

e value

%identity

Alignment

AT1G63780.1 Ribosomal RNA processing Brix domain protein

2.9e-36

33.66

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Query:  QKKLE-KRRRAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPAFISELLSVIP
        +K LE   R+   +    ++AL+ G+ +P        +  +E+D    +  +  +   +  DE+++  + D  PK+L+TT R  S     F  EL  V P
Subjt:  QKKLE-KRRRAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPAFISELLSVIP

Query:  NAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVVLRKDI---KNHGNPTSHQPELVLTNFTTRLGLRVGRLIQSL
        N+    RG+  + +IIE A + DFT +++VH  R   DGL+I  LP GPTA+F + NVV R DI   K+ G      P L+  NFTT++G RVG +++ +
Subjt:  NAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVVLRKDI---KNHGNPTSHQPELVLTNFTTRLGLRVGRLIQSL

Query:  FPQDPNFRGRRVATFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTS
        FP  P    +R+ TF NQ D+I FR+H Y                 K   G K ++      L+E GPRF ++L  ++ GT +    E EWV +P M+TS
Subjt:  FPQDPNFRGRRVATFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTS

Query:  RRRFFL
        ++R F+
Subjt:  RRRFFL

AT4G01560.1 Ribosomal RNA processing Brix domain protein

5.9e-138

74.02

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Query:  GEEKKNKGIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDI
        G EK+N  I+PSMIKNK+KR++V+A  K++KKLEK+++ +ARDAAEK+ALELGEE P + IP+TIENTRE DETVC+PDDEELFA  DADEF+ +++R+I
Subjt:  GEEKKNKGIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDI

Query:  LPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVVLRKDIKNHGNPTS
         PKVL+TTCRFNST GPA ISELLSVIPN+HY KRGT DLKKI+EYA  KDFTSL+VVHT+RR+ D LLIIGLP+GPTAHFK+SN+VLRKDIKNHGNPTS
Subjt:  LPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVVLRKDIKNHGNPTS

Query:  HQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVATFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKLI
        HQPELVL NFTTRLG RVGR  QSLFP DPNFRGRRV TFHNQRDFIFFRHHRYIFE+KE          SK  KG+   ++ +  RLQECGPRFT+KL+
Subjt:  HQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVATFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKLI

Query:  SLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
        +LQHGTFD+KGGE+EWVHKPEMDTSRRRFFL
Subjt:  SLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGGGAGGAGAAAAAGAACAAGGGTATAATCCCATCAATGATAAAGAACAAAGAAAAGAGGGCAGAAGTGCACGCCAACCTCAAGAACCAGAAGAAGCTTGAGAAACG
TAGGAGGGCCAAGGCTCGTGATGCTGCTGAGAAGCAAGCTCTTGAACTTGGAGAAGAACTTCCTCCTAGGAAGATTCCTCGCACCATTGAGAACACCAGGGAAGTTGATG
AGACTGTTTGCAAACCTGATGATGAAGAGCTATTTGCTGGAAATGATGCCGATGAATTTAGTTCCATCATAAAGCGCGACATTTTGCCGAAAGTTCTAATTACTACTTGT
CGTTTTAATTCTACTATTGGACCTGCTTTTATATCAGAGTTGCTTTCGGTGATACCAAATGCACATTACTACAAGAGAGGAACTAACGATTTGAAGAAGATTATAGAATA
TGCAAATGCCAAGGACTTCACTTCTTTGATGGTTGTCCATACGAGTAGGAGAAAATTGGATGGTCTTTTAATTATTGGCTTACCTGACGGACCTACTGCGCATTTTAAGA
TATCTAATGTTGTCTTACGTAAGGATATTAAGAATCATGGAAATCCAACCAGCCATCAGCCAGAGCTGGTATTGACCAACTTCACAACACGCCTTGGTCTTCGTGTTGGA
AGATTAATACAATCACTATTCCCTCAAGATCCTAATTTTCGTGGTCGACGGGTTGCAACTTTTCACAACCAACGAGATTTTATATTCTTTCGGCATCATCGATACATTTT
TGAAAGCAAGGAAAATAAGAAAGAGTCAGACTCAAAAAATAAGTCCAAGGATACCAAGGGTGAGAAAGTTCTTCAGCAGAAAGTAGTTGCTCGGCTTCAGGAATGTGGTC
CTCGTTTCACAATGAAATTGATCAGTTTGCAGCATGGAACTTTCGATTCAAAAGGCGGAGAATATGAATGGGTTCATAAGCCTGAAATGGATACCAGCCGCAGAAGATTT
TTCTTGTAA

mRNA sequence

Show/hide mRNA sequence

CTTTTTTCCATTTTCCTAATATATATTTTTCATTTCGTTACCTTATGCTCTTCCGCTCTTGCCTCCGTCCGCCACTAGTCGAACGCCGCCACTCCTCAGTCTTCTCCTTC
GCCAGTCGCCACCGCCCACATCTTCTTTTTCTTCCGAAATCGGTCTTTCAGAGGTTGATCAAGGAGTATAGATGGGGGAGGAGAAAAAGAACAAGGGTATAATCCCATCA
ATGATAAAGAACAAAGAAAAGAGGGCAGAAGTGCACGCCAACCTCAAGAACCAGAAGAAGCTTGAGAAACGTAGGAGGGCCAAGGCTCGTGATGCTGCTGAGAAGCAAGC
TCTTGAACTTGGAGAAGAACTTCCTCCTAGGAAGATTCCTCGCACCATTGAGAACACCAGGGAAGTTGATGAGACTGTTTGCAAACCTGATGATGAAGAGCTATTTGCTG
GAAATGATGCCGATGAATTTAGTTCCATCATAAAGCGCGACATTTTGCCGAAAGTTCTAATTACTACTTGTCGTTTTAATTCTACTATTGGACCTGCTTTTATATCAGAG
TTGCTTTCGGTGATACCAAATGCACATTACTACAAGAGAGGAACTAACGATTTGAAGAAGATTATAGAATATGCAAATGCCAAGGACTTCACTTCTTTGATGGTTGTCCA
TACGAGTAGGAGAAAATTGGATGGTCTTTTAATTATTGGCTTACCTGACGGACCTACTGCGCATTTTAAGATATCTAATGTTGTCTTACGTAAGGATATTAAGAATCATG
GAAATCCAACCAGCCATCAGCCAGAGCTGGTATTGACCAACTTCACAACACGCCTTGGTCTTCGTGTTGGAAGATTAATACAATCACTATTCCCTCAAGATCCTAATTTT
CGTGGTCGACGGGTTGCAACTTTTCACAACCAACGAGATTTTATATTCTTTCGGCATCATCGATACATTTTTGAAAGCAAGGAAAATAAGAAAGAGTCAGACTCAAAAAA
TAAGTCCAAGGATACCAAGGGTGAGAAAGTTCTTCAGCAGAAAGTAGTTGCTCGGCTTCAGGAATGTGGTCCTCGTTTCACAATGAAATTGATCAGTTTGCAGCATGGAA
CTTTCGATTCAAAAGGCGGAGAATATGAATGGGTTCATAAGCCTGAAATGGATACCAGCCGCAGAAGATTTTTCTTGTAACATTCTCATGGAGTTCATTACTTTTGGTTC
TGGGGAGTAAAAATTCTTTGGCTCTGATTTATATAAAAATTTTGGGTGGACTGCTTATCAAATTCGAATCTCCATTTCGGCCTGCATGTATGTTAGAAGAAGTTGATTTA
TTTTTCACTATTCAAAATTTTGTAGCATTCCAGTTGAGATTGAGTTTGTTTTAGAGGCATCAATGTATTGATATTTGAAAGCATTTGGATAGTATAGTGTTATTTCTAGT
AGCTGACAATTCAAAAGAAAAAGCCACATATTCATTCTCTGATCTAGTGGGTAAAAGGGTTGAGATTCAGGAGCTTATAGAATGCAATTTGGATTTTGAATTTTGCATGT
CCGATATAAAGTGAAAGATTAGACTTGTT

Protein sequence

Show/hide protein sequence

MGEEKKNKGIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTC
RFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVVLRKDIKNHGNPTSHQPELVLTNFTTRLGLRVG
RLIQSLFPQDPNFRGRRVATFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTSRRRF
FL

Clc10G16280 (gene) of Watermelon (cordophanus) v2 genome