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Clc10G17460 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc10G17460
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionVQ domain-containing protein
Genome locationClcChr10:31322388..31322852
RNA-Seq ExpressionClc10G17460
SyntenyClc10G17460
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR008889 - VQ
IPR039607 - VQ motif-containing protein 8/17/18/20/21/25


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043778.1 protein MKS1-like [Cucumis melo var. makuwa]8.6e-4083.96Show/hide
Query:  RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVTSSCSTTELITNHSGEEFVSA
        RNQ QLRGPRPPPLTVNKSST IFKKSTKN     PN+R+RRSP+IIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVV SSCS + +IT+HSGEEF SA
Subjt:  RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVTSSCSTTELITNHSGEEFVSA

Query:  CNCIPS
        CNCIPS
Subjt:  CNCIPS

KAG6596645.1 VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]5.9e-3377.78Show/hide
Query:  RNQ--LQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVTSSCSTTELITNHSGEEFV
        RNQ  L+LRGPRPPPLTVNKSSTKIFKKST  N  PIPNRRD   PVI+YLRSPKIIHVRPEEFKSFVQRLTGN SSVAVV +S S T +I +H GE  V
Subjt:  RNQ--LQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVTSSCSTTELITNHSGEEFV

Query:  SACNCIPS
        SACN IPS
Subjt:  SACNCIPS

KGN59247.1 hypothetical protein Csa_002000 [Cucumis sativus]1.2e-3681.31Show/hide
Query:  RNQLQLRGPRPPPLTVNK-SSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVTSSCSTTELITNHSGEEFVS
        RN  QLRGPRPPPLTVNK SST I KKSTKNNPLPI N+R RRSP+IIYLRSPK+IHVRPEEFKSFVQRLTGNRSSVAVV SSCS T +I +   EEFVS
Subjt:  RNQLQLRGPRPPPLTVNK-SSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVTSSCSTTELITNHSGEEFVS

Query:  ACNCIPS
         CNCIPS
Subjt:  ACNCIPS

XP_008443599.1 PREDICTED: protein MKS1-like [Cucumis melo]8.6e-4083.96Show/hide
Query:  RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVTSSCSTTELITNHSGEEFVSA
        RNQ QLRGPRPPPLTVNKSST IFKKSTKN     PN+R+RRSP+IIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVV SSCS + +IT+HSGEEF SA
Subjt:  RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVTSSCSTTELITNHSGEEFVSA

Query:  CNCIPS
        CNCIPS
Subjt:  CNCIPS

XP_041027964.1 protein MKS1-like [Juglans microcarpa x Juglans regia]1.1e-1359.77Show/hide
Query:  QLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNR--SSVAVVTSSCSTTELI
        QL GPRP PLTV+KSS KI K      P PIP+R+  RSPVIIYL+SPK+IHVRPEEF   VQRLTGN+  S  A  + S S+T  +
Subjt:  QLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNR--SSVAVVTSSCSTTELI

TrEMBL top hitse value%identityAlignment
A0A0A0LEW5 VQ domain-containing protein5.6e-3781.31Show/hide
Query:  RNQLQLRGPRPPPLTVNK-SSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVTSSCSTTELITNHSGEEFVS
        RN  QLRGPRPPPLTVNK SST I KKSTKNNPLPI N+R RRSP+IIYLRSPK+IHVRPEEFKSFVQRLTGNRSSVAVV SSCS T +I +   EEFVS
Subjt:  RNQLQLRGPRPPPLTVNK-SSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVTSSCSTTELITNHSGEEFVS

Query:  ACNCIPS
         CNCIPS
Subjt:  ACNCIPS

A0A1R3JJT0 VQ motif-containing protein4.3e-1358.23Show/hide
Query:  QLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIP--NRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVTS
        +L+GPRP PL V+ +S+KI KKS+  + L  P  NR     PV+IYLRSPKIIHVRPEEF S VQRLTG  S+ A  +S
Subjt:  QLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIP--NRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVTS

A0A1S3B975 protein MKS1-like4.1e-4083.96Show/hide
Query:  RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVTSSCSTTELITNHSGEEFVSA
        RNQ QLRGPRPPPLTVNKSST IFKKSTKN     PN+R+RRSP+IIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVV SSCS + +IT+HSGEEF SA
Subjt:  RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVTSSCSTTELITNHSGEEFVSA

Query:  CNCIPS
        CNCIPS
Subjt:  CNCIPS

A0A2N9GB07 VQ domain-containing protein4.6e-1560.71Show/hide
Query:  RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVTSSCS
        +  LQL+GPRP PLTVNKSSTKI K+       P+PN R R SPVIIYL+SPK+IHVRPEEF   VQ+LTGN++   V   S S
Subjt:  RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVTSSCS

A0A5D3DP92 Protein MKS1-like4.1e-4083.96Show/hide
Query:  RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVTSSCSTTELITNHSGEEFVSA
        RNQ QLRGPRPPPLTVNKSST IFKKSTKN     PN+R+RRSP+IIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVV SSCS + +IT+HSGEEF SA
Subjt:  RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVTSSCSTTELITNHSGEEFVSA

Query:  CNCIPS
        CNCIPS
Subjt:  CNCIPS

SwissProt top hitse value%identityAlignment
F4HWF9 Nuclear speckle RNA-binding protein B1.3e-0640Show/hide
Query:  GPRPPPLTVNKSSTKIFKKSTKNNPLPIP-----------NRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVTSSCSTT
        GP+P PL V   S KI KK     P P P             R    PV IY  +P+IIH  P  F + VQRLTG  S+    +SS S+T
Subjt:  GPRPPPLTVNKSSTKIFKKSTKNNPLPIP-----------NRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVTSSCSTT

Q8LGD5 Protein MKS13.3e-1048.15Show/hide
Query:  RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRD-----RRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSV
        + QLQ+ GPRP PL+V+K S KI  K    +P P PNR        R PV+IY  SPK++H    EF + VQRLTG  S V
Subjt:  RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRD-----RRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSV

Q9CA36 VQ motif-containing protein 8, chloroplastic6.4e-0642.17Show/hide
Query:  QLRGPRPPPLTVNKSSTKIFKKST-KNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVTSSCSTT
        ++ G RP  L +   S  I K S+ K+ P P      R SPVIIY  SPK+IH R E+F + VQRLTG    +   TS  S++
Subjt:  QLRGPRPPPLTVNKSSTKIFKKST-KNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVTSSCSTT

Q9LS54 VQ motif-containing protein 202.4e-0544.44Show/hide
Query:  PRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTG
        P PP L VNK S  I K     +P    +    R PVIIY  +P+IIH  P++F + VQ+LTG
Subjt:  PRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTG

Arabidopsis top hitse value%identityAlignment
AT1G21320.1 nucleotide binding;nucleic acid binding9.2e-0840Show/hide
Query:  GPRPPPLTVNKSSTKIFKKSTKNNPLPIP-----------NRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVTSSCSTT
        GP+P PL V   S KI KK     P P P             R    PV IY  +P+IIH  P  F + VQRLTG  S+    +SS S+T
Subjt:  GPRPPPLTVNKSSTKIFKKSTKNNPLPIP-----------NRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVTSSCSTT

AT1G21326.1 VQ motif-containing protein2.4e-0842.22Show/hide
Query:  GPRPPPLTVNKSSTKIFKKSTKNNPLPIP-----------NRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVTSSCSTT
        GPRP PL V   S KI KK     P P P             R    PVIIY  SP+IIH  P  F + VQRLTG  S+    +S  S+T
Subjt:  GPRPPPLTVNKSSTKIFKKSTKNNPLPIP-----------NRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVTSSCSTT

AT1G68450.1 VQ motif-containing protein4.6e-0742.17Show/hide
Query:  QLRGPRPPPLTVNKSSTKIFKKST-KNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVTSSCSTT
        ++ G RP  L +   S  I K S+ K+ P P      R SPVIIY  SPK+IH R E+F + VQRLTG    +   TS  S++
Subjt:  QLRGPRPPPLTVNKSSTKIFKKST-KNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVTSSCSTT

AT3G18360.1 VQ motif-containing protein1.7e-0644.44Show/hide
Query:  PRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTG
        P PP L VNK S  I K     +P    +    R PVIIY  +P+IIH  P++F + VQ+LTG
Subjt:  PRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTG

AT3G18690.1 MAP kinase substrate 12.3e-1148.15Show/hide
Query:  RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRD-----RRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSV
        + QLQ+ GPRP PL+V+K S KI  K    +P P PNR        R PV+IY  SPK++H    EF + VQRLTG  S V
Subjt:  RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRD-----RRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAGAAATCAATTGCAATTGAGAGGTCCGAGGCCGCCGCCATTGACGGTGAACAAATCCTCCACTAAGATTTTCAAGAAATCGACGAAGAATAATCCGCTTCCGAT
TCCGAACCGACGCGACCGCCGTTCTCCGGTAATCATTTACCTCCGATCACCGAAGATCATCCATGTCCGTCCTGAGGAGTTCAAAAGCTTCGTTCAACGCCTCACCGGAA
ACCGATCCTCTGTCGCCGTCGTCACGTCGTCCTGTTCTACTACTGAATTAATTACGAATCATTCCGGTGAGGAATTTGTATCCGCTTGTAATTGCATTCCGTCGTAG
mRNA sequenceShow/hide mRNA sequence
TAAATTTCAAGCTCTTTCGTTCCTAATAATTCAAGACGGCAAAATCAAAGAAAGAAGAAGAAGAAATCTAACCAAATTTCGAAGCCGTAGCGCGTAATTGCAGAACAATG
ATGAGAAATCAATTGCAATTGAGAGGTCCGAGGCCGCCGCCATTGACGGTGAACAAATCCTCCACTAAGATTTTCAAGAAATCGACGAAGAATAATCCGCTTCCGATTCC
GAACCGACGCGACCGCCGTTCTCCGGTAATCATTTACCTCCGATCACCGAAGATCATCCATGTCCGTCCTGAGGAGTTCAAAAGCTTCGTTCAACGCCTCACCGGAAACC
GATCCTCTGTCGCCGTCGTCACGTCGTCCTGTTCTACTACTGAATTAATTACGAATCATTCCGGTGAGGAATTTGTATCCGCTTGTAATTGCATTCCGTCGTAGCTTACG
CCGTTGCACGGCGGATCCGTCGTGG
Protein sequenceShow/hide protein sequence
MMRNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVTSSCSTTELITNHSGEEFVSACNCIPS