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Clc10G19970 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc10G19970
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionDNA-binding protein S1FA
Genome locationClcChr10:33576622..33577256
RNA-Seq ExpressionClc10G19970
SyntenyClc10G19970
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR006779 - DNA binding protein S1FA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8651038.1 hypothetical protein Csa_000825 [Cucumis sativus]4.9e-2897.22Show/hide
Query:  QGNVINDVEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
        +GNVIND+EAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
Subjt:  QGNVINDVEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

XP_004137812.1 DNA-binding protein S1FA [Cucumis sativus]4.9e-2897.22Show/hide
Query:  QGNVINDVEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
        +GNVIND+EAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
Subjt:  QGNVINDVEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

XP_008442666.1 PREDICTED: DNA-binding protein S1FA-like [Cucumis melo]1.4e-2797.22Show/hide
Query:  QGNVINDVEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
        +GNVINDVEAKGFNPALIVLLLVGGLLL FLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
Subjt:  QGNVINDVEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

XP_022145490.1 DNA-binding protein S1FA-like [Momordica charantia]4.1e-2789.47Show/hide
Query:  ATGEQGNVINDVEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
        ++  +GNVINDVEAKGFNP LIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKM++ERLKQGVSAPGE
Subjt:  ATGEQGNVINDVEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

XP_038905724.1 DNA-binding protein S1FA-like [Benincasa hispida]3.7e-2898.61Show/hide
Query:  QGNVINDVEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
        +GNVINDVEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
Subjt:  QGNVINDVEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

TrEMBL top hitse value%identityAlignment
A0A0A0LAW3 DNA-binding protein S1FA2.4e-2897.22Show/hide
Query:  QGNVINDVEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
        +GNVIND+EAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
Subjt:  QGNVINDVEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

A0A1S3B680 DNA-binding protein S1FA-like6.8e-2897.22Show/hide
Query:  QGNVINDVEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
        +GNVINDVEAKGFNPALIVLLLVGGLLL FLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
Subjt:  QGNVINDVEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

A0A6J1CUM0 DNA-binding protein S1FA-like2.0e-2789.47Show/hide
Query:  ATGEQGNVINDVEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
        ++  +GNVINDVEAKGFNP LIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKM++ERLKQGVSAPGE
Subjt:  ATGEQGNVINDVEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

A0A6J1F6J1 DNA-binding protein S1FA-like2.0e-2795.83Show/hide
Query:  QGNVINDVEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
        +GNVINDVEAKG NPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKR+RLKQGVSAPGE
Subjt:  QGNVINDVEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

A0A6J1IZV9 DNA-binding protein S1FA-like2.0e-2795.83Show/hide
Query:  QGNVINDVEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
        +GNVINDVEAKG NPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKR+RLKQGVSAPGE
Subjt:  QGNVINDVEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

SwissProt top hitse value%identityAlignment
P42551 DNA-binding protein S1FA11.3e-2078.12Show/hide
Query:  EAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
        EAKG NP LIVLL+VGG LL+FL+ NY LY+YAQKNLPP+KKKPVSKKK+KRE+LKQGV  PGE
Subjt:  EAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

P42552 DNA-binding protein S1FA1.3e-2380.88Show/hide
Query:  INDVEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
        +N+VEAKG NP LIVLL++GGLLL FLVGN+ LY YAQKNLPPKKKKP+SKKKMKRERLKQGV+ PGE
Subjt:  INDVEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

Q42337 DNA-binding protein S1FA21.7e-2067.57Show/hide
Query:  GEQGNVINDVEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
        G  G  +  VEAKG NP LIVLL++GGLL+ FL+ NY +Y+YAQKNLPP+KKKP+SKKK+KRE+LKQGV  PGE
Subjt:  GEQGNVINDVEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

Q7XLX6 DNA-binding protein S1FA26.6e-2071.43Show/hide
Query:  NVINDVEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
        NV+ +   KG NP +IVL++V   LL+F VGNYALY+YAQK LPP+KKKPVSKKKMKRE+LKQGVSAPGE
Subjt:  NVINDVEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

Q93VI0 DNA-binding protein S1FA31.3e-2075.38Show/hide
Query:  VEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
        +E+KG NP LIVLL++GGLLL FLVGN+ LY YAQKNLPP+KKKPVSKKKMK+E++KQGV  PGE
Subjt:  VEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

Arabidopsis top hitse value%identityAlignment
AT2G37120.1 S1FA-like DNA-binding protein1.2e-2167.57Show/hide
Query:  GEQGNVINDVEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
        G  G  +  VEAKG NP LIVLL++GGLL+ FL+ NY +Y+YAQKNLPP+KKKP+SKKK+KRE+LKQGV  PGE
Subjt:  GEQGNVINDVEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

AT3G09735.1 S1FA-like DNA-binding protein9.5e-2275.38Show/hide
Query:  VEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
        +E+KG NP LIVLL++GGLLL FLVGN+ LY YAQKNLPP+KKKPVSKKKMK+E++KQGV  PGE
Subjt:  VEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

AT3G53370.1 S1FA-like DNA-binding protein9.5e-2278.12Show/hide
Query:  EAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
        EAKG NP LIVLL+VGG LL+FL+ NY LY+YAQKNLPP+KKKPVSKKK+KRE+LKQGV  PGE
Subjt:  EAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

AT3G53370.2 S1FA-like DNA-binding protein7.8e-0878.79Show/hide
Query:  YAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
        +A KNLPP+KKKPVSKKK+KRE+LKQGV  PGE
Subjt:  YAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACCCTGCAGGAAAATTGTCATCTCAAATCGGGGAATTTCGAGCGACTGGTGAACAGGGAAATGTGATCAATGATGTTGAAGCAAAAGGATTCAATCCAGCGCTAAT
AGTACTTCTTCTTGTTGGTGGGTTGCTGCTGATTTTCCTCGTAGGGAACTATGCACTTTACTTGTATGCACAGAAGAATCTCCCTCCCAAGAAGAAAAAGCCAGTATCTA
AAAAGAAGATGAAGAGAGAAAGACTGAAGCAAGGAGTGTCTGCACCTGGAGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAACCCTGCAGGAAAATTGTCATCTCAAATCGGGGAATTTCGAGCGACTGGTGAACAGGGAAATGTGATCAATGATGTTGAAGCAAAAGGATTCAATCCAGCGCTAAT
AGTACTTCTTCTTGTTGGTGGGTTGCTGCTGATTTTCCTCGTAGGGAACTATGCACTTTACTTGTATGCACAGAAGAATCTCCCTCCCAAGAAGAAAAAGCCAGTATCTA
AAAAGAAGATGAAGAGAGAAAGACTGAAGCAAGGAGTGTCTGCACCTGGAGAGTAA
Protein sequenceShow/hide protein sequence
MNPAGKLSSQIGEFRATGEQGNVINDVEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE