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Clc10G19990 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc10G19990
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPhototropic-responsive NPH3 family protein
Genome locationClcChr10:33579879..33581326
RNA-Seq ExpressionClc10G19990
SyntenyClc10G19990
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ESR42073.1 hypothetical protein CICLE_v10012558mg [Citrus clementina]1.7e-0762.3Show/hide
Query:  MAVALFFFLINIIGLARDLPLLLLPTLLLKNLINGGGNFSVRPGLDIGFADGFILKNSLLL
        +++A  FFL   IGL RDLPLLLLPTLLLKN I+GGG FS RPGLD+G    FI     LL
Subjt:  MAVALFFFLINIIGLARDLPLLLLPTLLLKNLINGGGNFSVRPGLDIGFADGFILKNSLLL

KAE8676660.1 hypothetical protein F3Y22_tig00111582pilonHSYRG00415 [Hibiscus syriacus]8.9e-0970.37Show/hide
Query:  MAVALFFFLINIIGLARDLPLLLLPTLLLKNLINGGGNFSVRPGLDIGFADGFI
        +++A+FFFL+N IGL  DLPLLLLPTLLLKN+INGG  FS RPGLD+GF + FI
Subjt:  MAVALFFFLINIIGLARDLPLLLLPTLLLKNLINGGGNFSVRPGLDIGFADGFI

KAF7807101.1 hypothetical protein G2W53_039262 [Senna tora]3.1e-0968.33Show/hide
Query:  ALFFFLINIIGLARDLPLLLLPTLLLKNLINGGGNFSVRPGLDIGFADGFILKNSLLLQW
        A+ FFL N IGL  DLPLLLLPTLLLKNLING GNFSVRPGL++G AD F+     +L W
Subjt:  ALFFFLINIIGLARDLPLLLLPTLLLKNLINGGGNFSVRPGLDIGFADGFILKNSLLLQW

KAF7818594.1 hypothetical protein G2W53_024049 [Senna tora]1.8e-0965.08Show/hide
Query:  MAVALFFFLINIIGLARDLPLLLLPTLLLKNLINGGGNFSVRPGLDIGFADGFILKNSLLLQW
        +++A+ FFL N IGL  DLP LLLPTLLLKNLINGGGNFSVRPGL++G AD F+     +L W
Subjt:  MAVALFFFLINIIGLARDLPLLLLPTLLLKNLINGGGNFSVRPGLDIGFADGFILKNSLLLQW

TrEMBL top hitse value%identityAlignment
A0A5A7P7D1 Phototropic-responsive NPH3 family protein9.3e-0470.27Show/hide
Query:  IGLARDLPLLLLPTLLLKNLINGGGNFSVRPGLDIGF
        +GL RDLP L LP L+ + LINGGGNFS RPGLD GF
Subjt:  IGLARDLPLLLLPTLLLKNLINGGGNFSVRPGLDIGF

A0A6A2Y0L1 Uncharacterized protein4.3e-0970.37Show/hide
Query:  MAVALFFFLINIIGLARDLPLLLLPTLLLKNLINGGGNFSVRPGLDIGFADGFI
        +++A+FFFL+N IGL  DLPLLLLPTLLLKN+INGG  FS RPGLD+GF + FI
Subjt:  MAVALFFFLINIIGLARDLPLLLLPTLLLKNLINGGGNFSVRPGLDIGFADGFI

M5W4P4 Uncharacterized protein1.7e-1072.22Show/hide
Query:  MAVALFFFLINIIGLARDLPLLLLPTLLLKNLINGGGNFSVRPGLDIGFADGFI
        +++A+FFFL N IGL R+ PLLLLPTL+L+NL NGGGN SVRPGLD+GFAD FI
Subjt:  MAVALFFFLINIIGLARDLPLLLLPTLLLKNLINGGGNFSVRPGLDIGFADGFI

V4S3V8 Uncharacterized protein8.1e-0862.3Show/hide
Query:  MAVALFFFLINIIGLARDLPLLLLPTLLLKNLINGGGNFSVRPGLDIGFADGFILKNSLLL
        +++A  FFL   IGL RDLPLLLLPTLLLKN I+GGG FS RPGLD+G    FI     LL
Subjt:  MAVALFFFLINIIGLARDLPLLLLPTLLLKNLINGGGNFSVRPGLDIGFADGFILKNSLLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGTGGCGTTGTTCTTCTTTCTCATAAACATCATCGGACTAGCCCGCGACCTCCCTCTGCTTTTGCTTCCCACATTGCTCCTCAAAAACCTCATCAACGGCGGCGG
AAATTTCTCCGTCCGACCTGGGCTCGATATCGGCTTCGCCGATGGCTTCATTTTAAAAAACTCTCTTCTTCTTCAATGGCTGTTACAAAAAAATTCCTCTGCGGAGCTTT
TTTGTGGTTCCTCTCTCTGCAGTCGCCGCCGTGAAGATAGGCGGTTTCCGGCTGAGTTGTTGTAG
mRNA sequenceShow/hide mRNA sequence
CTCTACCACAGCTTCAGAGATAAGAAATTTATACAAAACCCAAAATGAAAAAGAAAAAAAAAACTATCGATATTGAAGTAAGAAGAAGAAGAAGAATTAGAAAAAGAAAT
GACAGAGTAATGAAATTAAGATTTAAATGTGGTATTTTTGCTTATATATTATGAATTGTTCGATAAACAAGAATCAGGAATCCCCAACCTTCTCTTTTTCCAGAATCCTA
CTTCTGGGTTCATCTTCTCCGCCGTTCTCGACGGTTCCGATTTGCAACGTGTCAAAATCAACGGCCGAGATGAGTTTCCGAGGCCTTCTTCTTCTTCCCCTGTTTTATCT
CGTTCGATATTGGCTGATTTGATGATTCTTTCTGTGGTAGAATGTTCGTCAATAAGGTTCTTCGCAAATTCCTCGTCCTCCTCGAATTCCAAGCCTCCACTCGGATCTTG
ATCCGAAACTGAGGCTCTTTGGGATGTGGGTTTCTCAATCTCGACTGTTTTTCCGCCATTGTTGGGCTTTGTGCTCTGTTCTTTTTCTTCTTCTTCTTCCTGATTTTCCT
CGTTTCTCAAAGGAGACCCCCAAAATCTACTCGCTAATGATGTCGATCGATATGGAGCAGATCTGCATCTCGTTAGTAACAATGCGTTTTTCGGGGGCGATGAATTAGAA
GAAATGAACGCTTCGGCTGTTTCTTCCTCTTCGTCGCCGCTGTCGACAGCGGCGACGACTTGGGTTTCTGGGTTTGAAATTTCAAATCCTCCGTGGAAGGGGGTTTCACG
TGGCGGCGAATTTGTTCTAATTTTGGGTTTTCGGCGGAACCCACATTGGAAATACGAGACCCATCTCTGAAATATTGGAGAACAATTGGGTTTGAATTTCTTTCGAAAAC
AGGGGCAAAACAGAGCAGCTCGGATCCAGCGGCAACGACGGCGCGTAGGAGTACCAGAACGTTTTCGGCGGCGCGTGGAGGAGCGACGAACTCGAACCTGACCGATACAA
GTAACTTTAGGGGACGAAGGCTCTTGGGTTTCAATGGCGGTGGCGTTGTTCTTCTTTCTCATAAACATCATCGGACTAGCCCGCGACCTCCCTCTGCTTTTGCTTCCCAC
ATTGCTCCTCAAAAACCTCATCAACGGCGGCGGAAATTTCTCCGTCCGACCTGGGCTCGATATCGGCTTCGCCGATGGCTTCATTTTAAAAAACTCTCTTCTTCTTCAAT
GGCTGTTACAAAAAAATTCCTCTGCGGAGCTTTTTTGTGGTTCCTCTCTCTGCAGTCGCCGCCGTGAAGATAGGCGGTTTCCGGCTGAGTTGTTGTAGAGTTTAGAAGGT
TTCGTTTCACTAAATTTATGAGTTTTTCATTTTTCTTTGTTTTTCCTTTTCCCTTTATTTTTTGTAGGGAAATATTTGTTTTGTGTGTGAATATTTATATATGTGAGTGC
ACGGATGGTGAATCGACC
Protein sequenceShow/hide protein sequence
MAVALFFFLINIIGLARDLPLLLLPTLLLKNLINGGGNFSVRPGLDIGFADGFILKNSLLLQWLLQKNSSAELFCGSSLCSRRREDRRFPAELL