; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc10G20430 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc10G20430
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionHistone H2B
Genome locationClcChr10:33964785..33967676
RNA-Seq ExpressionClc10G20430
SyntenyClc10G20430
Gene Ontology termsGO:0006334 - nucleosome assembly (biological process)
GO:0000786 - nucleosome (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR000558 - Histone H2B
IPR007125 - Histone H2A/H2B/H3
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4385352.1 hypothetical protein G4B88_026635 [Cannabis sativa]1.7e-4858.22Show/hide
Query:  MAPTKAEKKPAEKKPAEKTPSSVEKKPKAEKKIAKDG-GDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYN
        MAPTK EK+PA    AEK P + EK  K EKKI+K+G  DKKKKKIKKS ETYKIY+FKVLKQVHPDIGIS KAMGIMNSFINDIFEKLAQE+S+LARYN
Subjt:  MAPTKAEKKPAEKKPAEKTPSSVEKKPKAEKKIAKDG-GDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYN

Query:  KKPTITSREIQTAVRLVLPDPNSATIFDLILPKLSDSPPPPPPPPPHLRRSFSSCYGSDDFRLVLLIQRFQTLRKLGFRRAFSMPSVPIDLFLGPLLPSL
        KKPTITSREIQTAVRLVLP        +L    +S+             ++ +  Y                  K+GF     MPSVPI     PLLP +
Subjt:  KKPTITSREIQTAVRLVLPDPNSATIFDLILPKLSDSPPPPPPPPPHLRRSFSSCYGSDDFRLVLLIQRFQTLRKLGFRRAFSMPSVPIDLFLGPLLPSL

Query:  TSFHGGSSSHRLKRLEKGDRREGFC
        TSFHGGS +HRLK LEK DRR   C
Subjt:  TSFHGGSSSHRLKRLEKGDRREGFC

XP_008442575.1 PREDICTED: probable histone H2B.3 [Cucumis melo]3.0e-5098.31Show/hide
Query:  MAPTKAEKKPAEKKPAEKTPSSVEKKPKAEKKIAKDGGDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNK
        MAPTKAEKKPAEKKPAEKTPSS EKKPKAEKKIAKD GDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNK
Subjt:  MAPTKAEKKPAEKKPAEKTPSSVEKKPKAEKKIAKDGGDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNK

Query:  KPTITSREIQTAVRLVLP
        KPTITSREIQTAVRLVLP
Subjt:  KPTITSREIQTAVRLVLP

XP_022935032.1 probable histone H2B.3 [Cucurbita moschata]4.4e-4996.61Show/hide
Query:  MAPTKAEKKPAEKKPAEKTPSSVEKKPKAEKKIAKDGGDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNK
        MAPTKAEKKPAEKKPAEKTP+S EKK KAEKKIAKDGGDKKKKK+KKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNK
Subjt:  MAPTKAEKKPAEKKPAEKTPSSVEKKPKAEKKIAKDGGDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNK

Query:  KPTITSREIQTAVRLVLP
        KPTITSREIQTAVRLVLP
Subjt:  KPTITSREIQTAVRLVLP

XP_022958236.1 probable histone H2B.3 [Cucurbita moschata]1.5e-4996.61Show/hide
Query:  MAPTKAEKKPAEKKPAEKTPSSVEKKPKAEKKIAKDGGDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNK
        MAPTKAEKKPAEKKPAEKTP+S EKKPKAEKKIAKD GDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNK
Subjt:  MAPTKAEKKPAEKKPAEKTPSSVEKKPKAEKKIAKDGGDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNK

Query:  KPTITSREIQTAVRLVLP
        KPTITSREIQTAVRLVLP
Subjt:  KPTITSREIQTAVRLVLP

XP_038903506.1 probable histone H2B.3 [Benincasa hispida]2.3e-5098.31Show/hide
Query:  MAPTKAEKKPAEKKPAEKTPSSVEKKPKAEKKIAKDGGDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNK
        MAPTKAEKKPAEKKPAEK PSS EKKPKAEKKIAKDGGDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNK
Subjt:  MAPTKAEKKPAEKKPAEKTPSSVEKKPKAEKKIAKDGGDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNK

Query:  KPTITSREIQTAVRLVLP
        KPTITSREIQTAVRLVLP
Subjt:  KPTITSREIQTAVRLVLP

TrEMBL top hitse value%identityAlignment
A0A1S3B6N1 Histone H2B1.5e-5098.31Show/hide
Query:  MAPTKAEKKPAEKKPAEKTPSSVEKKPKAEKKIAKDGGDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNK
        MAPTKAEKKPAEKKPAEKTPSS EKKPKAEKKIAKD GDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNK
Subjt:  MAPTKAEKKPAEKKPAEKTPSSVEKKPKAEKKIAKDGGDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNK

Query:  KPTITSREIQTAVRLVLP
        KPTITSREIQTAVRLVLP
Subjt:  KPTITSREIQTAVRLVLP

A0A5D3DN75 Histone H2B1.5e-5098.31Show/hide
Query:  MAPTKAEKKPAEKKPAEKTPSSVEKKPKAEKKIAKDGGDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNK
        MAPTKAEKKPAEKKPAEKTPSS EKKPKAEKKIAKD GDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNK
Subjt:  MAPTKAEKKPAEKKPAEKTPSSVEKKPKAEKKIAKDGGDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNK

Query:  KPTITSREIQTAVRLVLP
        KPTITSREIQTAVRLVLP
Subjt:  KPTITSREIQTAVRLVLP

A0A6J1H1K6 Histone H2B7.3e-5096.61Show/hide
Query:  MAPTKAEKKPAEKKPAEKTPSSVEKKPKAEKKIAKDGGDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNK
        MAPTKAEKKPAEKKPAEKTP+S EKKPKAEKKIAKD GDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNK
Subjt:  MAPTKAEKKPAEKKPAEKTPSSVEKKPKAEKKIAKDGGDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNK

Query:  KPTITSREIQTAVRLVLP
        KPTITSREIQTAVRLVLP
Subjt:  KPTITSREIQTAVRLVLP

A0A6J1IZM1 Histone H2B2.1e-4996.61Show/hide
Query:  MAPTKAEKKPAEKKPAEKTPSSVEKKPKAEKKIAKDGGDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNK
        MAPTKAEKKPAEKKPAEKTP+S EKK KAEKKIAKDGGDKKKKK+KKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNK
Subjt:  MAPTKAEKKPAEKKPAEKTPSSVEKKPKAEKKIAKDGGDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNK

Query:  KPTITSREIQTAVRLVLP
        KPTITSREIQTAVRLVLP
Subjt:  KPTITSREIQTAVRLVLP

A0A6J1KUE6 Histone H2B7.3e-5096.61Show/hide
Query:  MAPTKAEKKPAEKKPAEKTPSSVEKKPKAEKKIAKDGGDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNK
        MAPTKAEKKPAEKKPAEKTP+S EKKPKAEKKIAKD GDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNK
Subjt:  MAPTKAEKKPAEKKPAEKTPSSVEKKPKAEKKIAKDGGDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNK

Query:  KPTITSREIQTAVRLVLP
        KPTITSREIQTAVRLVLP
Subjt:  KPTITSREIQTAVRLVLP

SwissProt top hitse value%identityAlignment
O22582 Histone H2B9.2e-4281.1Show/hide
Query:  MAPTKAEKKPAEKKPAEK-----TPSSVEKKPKAEKKIAKDG----GDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE
        MAP KAEKKPAEKKPAE+       +  EKKPKA KK+ K+G    GDKKKK++KKS ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE
Subjt:  MAPTKAEKKPAEKKPAEK-----TPSSVEKKPKAEKKIAKDG----GDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE

Query:  ASKLARYNKKPTITSREIQTAVRLVLP
        AS+LARYNKKPTITSREIQTAVRLVLP
Subjt:  ASKLARYNKKPTITSREIQTAVRLVLP

Q1SU99 Probable histone H2B.34.0e-4587.39Show/hide
Query:  MAPTKAEKKPAEKKPAEKTPSSVEKKPKAEKKIAKDG-GDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYN
        M PTKAEKKPAEKKPAEK P+  EKKPKAEKKI+K+G  DKKKK+ KKS ETYKIYIFKVLKQVHPDIG+SSKAMGIMNSFINDIFEKLAQE+S+LARYN
Subjt:  MAPTKAEKKPAEKKPAEKTPSSVEKKPKAEKKIAKDG-GDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYN

Query:  KKPTITSREIQTAVRLVLP
        KKPTITSREIQTAVRLVLP
Subjt:  KKPTITSREIQTAVRLVLP

Q9LFF6 Histone H2B.83.2e-4284.87Show/hide
Query:  MAPTKAEKKPAEKKPAEKTPSSVEKKPKAEKKIAKDGG-DKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYN
        MAP  AEKKPA KKPAEK P+  EK PKAEKKI K+GG +KKKKK KK+ ETYKIYIFKVLKQVHPDIGIS KAMGIMNSFINDIFEKLAQE+S+LARYN
Subjt:  MAPTKAEKKPAEKKPAEKTPSSVEKKPKAEKKIAKDGG-DKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYN

Query:  KKPTITSREIQTAVRLVLP
        KKPTITSREIQTAVRLVLP
Subjt:  KKPTITSREIQTAVRLVLP

Q9SI96 Histone H2B.31.6e-4179.39Show/hide
Query:  MAPTKAEKKPAEKKPAEKTPSS---------VEKKPKAEKKIAKD----GGDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
        MAP KA KKPAEKKPAEK P+           EKKPKA KK+ K+    G +KKKK++KKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
Subjt:  MAPTKAEKKPAEKKPAEKTPSS---------VEKKPKAEKKIAKD----GGDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK

Query:  LAQEASKLARYNKKPTITSREIQTAVRLVLP
        LAQEASKLARYNKKPTITSREIQTAVRLVLP
Subjt:  LAQEASKLARYNKKPTITSREIQTAVRLVLP

Q9ZUS0 Histone H2B.41.1e-4285Show/hide
Query:  MAPTKAEKKPAEKKPAEKTPSSVEKKPKAEKKIAKD--GGDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARY
        MAP  AEKKPAEKKPA K P+  EK PKAEKKI+KD  G +KKKKK KKS ETYKIYIFKVLKQVHPD+GIS KAMGIMNSFINDIFEKLAQE+SKLARY
Subjt:  MAPTKAEKKPAEKKPAEKTPSSVEKKPKAEKKIAKD--GGDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARY

Query:  NKKPTITSREIQTAVRLVLP
        NKKPTITSREIQTAVRLVLP
Subjt:  NKKPTITSREIQTAVRLVLP

Arabidopsis top hitse value%identityAlignment
AT2G28720.1 Histone superfamily protein1.1e-4279.39Show/hide
Query:  MAPTKAEKKPAEKKPAEKTPSS---------VEKKPKAEKKIAKD----GGDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
        MAP KA KKPAEKKPAEK P+           EKKPKA KK+ K+    G +KKKK++KKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK
Subjt:  MAPTKAEKKPAEKKPAEKTPSS---------VEKKPKAEKKIAKD----GGDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK

Query:  LAQEASKLARYNKKPTITSREIQTAVRLVLP
        LAQEASKLARYNKKPTITSREIQTAVRLVLP
Subjt:  LAQEASKLARYNKKPTITSREIQTAVRLVLP

AT2G37470.1 Histone superfamily protein7.7e-4485Show/hide
Query:  MAPTKAEKKPAEKKPAEKTPSSVEKKPKAEKKIAKD--GGDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARY
        MAP  AEKKPAEKKPA K P+  EK PKAEKKI+KD  G +KKKKK KKS ETYKIYIFKVLKQVHPD+GIS KAMGIMNSFINDIFEKLAQE+SKLARY
Subjt:  MAPTKAEKKPAEKKPAEKTPSSVEKKPKAEKKIAKD--GGDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARY

Query:  NKKPTITSREIQTAVRLVLP
        NKKPTITSREIQTAVRLVLP
Subjt:  NKKPTITSREIQTAVRLVLP

AT3G53650.1 Histone superfamily protein2.2e-4384.87Show/hide
Query:  MAPTKAEKKPAEKKPAEKTPSSVEKKPKAEKKIAKDGG-DKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYN
        MAP  AEKKPA KKPAEK P+  EK PKAEKKI K+GG +KKKKK KK+ ETYKIYIFKVLKQVHPDIGIS KAMGIMNSFINDIFEKLAQE+S+LARYN
Subjt:  MAPTKAEKKPAEKKPAEKTPSSVEKKPKAEKKIAKDGG-DKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYN

Query:  KKPTITSREIQTAVRLVLP
        KKPTITSREIQTAVRLVLP
Subjt:  KKPTITSREIQTAVRLVLP

AT5G22880.1 histone B22.5e-4281.15Show/hide
Query:  KAEKKPAEKKPAEKTP-----SSVEKKPKAEKKIAKD---GGDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLA
        KA+KKPAEKKPAEKTP     ++ EKKPKA KK+ K+    GDKKKK+ KK+ ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA E+SKLA
Subjt:  KAEKKPAEKKPAEKTP-----SSVEKKPKAEKKIAKD---GGDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLA

Query:  RYNKKPTITSREIQTAVRLVLP
        RYNKKPTITSREIQTAVRLVLP
Subjt:  RYNKKPTITSREIQTAVRLVLP

AT5G59910.1 Histone superfamily protein3.2e-4280Show/hide
Query:  MAPTKAEKKPAEKKPAEKTP---------SSVEKKPKAEKKIAKD---GGDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKL
        MAP KAEKKPAEKKPA + P         +  EKKPKA KK+ K+   GGDKKKK  KKS ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKL
Subjt:  MAPTKAEKKPAEKKPAEKTP---------SSVEKKPKAEKKIAKD---GGDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKL

Query:  AQEASKLARYNKKPTITSREIQTAVRLVLP
        AQEASKLARYNKKPTITSREIQTAVRLVLP
Subjt:  AQEASKLARYNKKPTITSREIQTAVRLVLP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCAACTAAAGCCGAAAAGAAGCCCGCAGAGAAGAAACCGGCCGAGAAAACCCCTTCCTCGGTGGAGAAGAAGCCTAAGGCCGAGAAGAAGATCGCCAAAGACGG
TGGCGACAAGAAGAAGAAGAAGATCAAGAAGAGCACCGAGACTTACAAGATCTACATCTTCAAGGTTTTGAAGCAGGTTCATCCTGACATTGGAATCTCCAGCAAGGCAA
TGGGCATTATGAACAGTTTCATCAACGATATCTTCGAGAAACTTGCTCAAGAGGCTTCGAAATTGGCGAGATATAACAAGAAACCTACGATCACCTCACGGGAGATCCAG
ACCGCCGTTCGATTGGTGTTGCCTGATCCCAATTCCGCCACCATTTTCGACCTCATCCTCCCAAAATTATCCGATTCACCTCCGCCTCCGCCTCCGCCGCCGCCGCATCT
CCGCCGATCTTTTTCATCATGTTACGGATCAGATGATTTCCGGCTTGTCCTTTTGATTCAACGATTTCAGACCCTACGAAAATTAGGGTTTCGAAGAGCATTCAGTATGC
CTTCGGTACCTATTGATCTCTTCCTTGGCCCTCTGCTTCCTTCTTTGACTTCTTTTCATGGTGGTTCGTCCTCGCATCGTCTGAAGCGGCTCGAAAAGGGTGATCGGCGT
GAGGGTTTTTGCATCCCTGATTATTGTGCGAGGTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCAACTAAAGCCGAAAAGAAGCCCGCAGAGAAGAAACCGGCCGAGAAAACCCCTTCCTCGGTGGAGAAGAAGCCTAAGGCCGAGAAGAAGATCGCCAAAGACGG
TGGCGACAAGAAGAAGAAGAAGATCAAGAAGAGCACCGAGACTTACAAGATCTACATCTTCAAGGTTTTGAAGCAGGTTCATCCTGACATTGGAATCTCCAGCAAGGCAA
TGGGCATTATGAACAGTTTCATCAACGATATCTTCGAGAAACTTGCTCAAGAGGCTTCGAAATTGGCGAGATATAACAAGAAACCTACGATCACCTCACGGGAGATCCAG
ACCGCCGTTCGATTGGTGTTGCCTGATCCCAATTCCGCCACCATTTTCGACCTCATCCTCCCAAAATTATCCGATTCACCTCCGCCTCCGCCTCCGCCGCCGCCGCATCT
CCGCCGATCTTTTTCATCATGTTACGGATCAGATGATTTCCGGCTTGTCCTTTTGATTCAACGATTTCAGACCCTACGAAAATTAGGGTTTCGAAGAGCATTCAGTATGC
CTTCGGTACCTATTGATCTCTTCCTTGGCCCTCTGCTTCCTTCTTTGACTTCTTTTCATGGTGGTTCGTCCTCGCATCGTCTGAAGCGGCTCGAAAAGGGTGATCGGCGT
GAGGGTTTTTGCATCCCTGATTATTGTGCGAGGTTCTAG
Protein sequenceShow/hide protein sequence
MAPTKAEKKPAEKKPAEKTPSSVEKKPKAEKKIAKDGGDKKKKKIKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQ
TAVRLVLPDPNSATIFDLILPKLSDSPPPPPPPPPHLRRSFSSCYGSDDFRLVLLIQRFQTLRKLGFRRAFSMPSVPIDLFLGPLLPSLTSFHGGSSSHRLKRLEKGDRR
EGFCIPDYCARF