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Clc10G20470 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc10G20470
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
Genome locationClcChr10:33993163..33994201
RNA-Seq ExpressionClc10G20470
SyntenyClc10G20470
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044076.1 hypothetical protein E6C27_scaffold236G004240 [Cucumis melo var. makuwa]9.2e-2380.49Show/hide
Query:  MSQRPGRHQRRPSQGVFMAAVYLSEPPPP--AGPGSTVESGGVHSTLLNRPPQQSRSADPAAATAARPPAPAASNEAPNPAS
        MSQRPGRHQRRPSQGVFMAA YLSEPPPP   GPGSTVESGG HS LL RPPQQSR+ADP    A RPPAPAA+N+A NPAS
Subjt:  MSQRPGRHQRRPSQGVFMAAVYLSEPPPP--AGPGSTVESGGVHSTLLNRPPQQSRSADPAAATAARPPAPAASNEAPNPAS

KAG6580559.1 hypothetical protein SDJN03_20561, partial [Cucurbita argyrosperma subsp. sororia]1.1e-1873.75Show/hide
Query:  MSQRPGRHQRRPSQGVFMAAVYLSEPPPPAGPGSTVESGGVHSTLLNRPPQQSRSADPAAATAARPPAPAASNEAPNPAS
        MSQR GRHQRRPSQ VF+AA YLSEPP   GPGS VE  G HS  L RPPQQSR+ADPA   A RPPAPAASNEAPNP +
Subjt:  MSQRPGRHQRRPSQGVFMAAVYLSEPPPPAGPGSTVESGGVHSTLLNRPPQQSRSADPAAATAARPPAPAASNEAPNPAS

KAG6596419.1 hypothetical protein SDJN03_09599, partial [Cucurbita argyrosperma subsp. sororia]3.1e-1873.75Show/hide
Query:  MSQRPGRHQRRPSQGVFMAAVYLSEPPPPAGPGSTVESGGVHSTLLNRPPQQSRSADPAAATAARPPAPAASNEAPNPAS
        MSQR GRHQRRPSQGVFM A YLSEPPPP GP   VES    S+ L+RPP QSR ADP    AARPPAPA SNEAPNPAS
Subjt:  MSQRPGRHQRRPSQGVFMAAVYLSEPPPPAGPGSTVESGGVHSTLLNRPPQQSRSADPAAATAARPPAPAASNEAPNPAS

KGN58888.1 hypothetical protein Csa_002334 [Cucumis sativus]6.6e-2178.31Show/hide
Query:  MSQRPGRHQRRPSQGVFMAAVYLSEPPPPAGPGSTVESGGVH-STLLNRPPQQSRSADPAAATAARPPAP--AASNEAPNPAS
        MSQRP RHQRRPSQGVFM A YLS+PPPP GPGSTVESGG H STLL RP QQSRSADP    AARPPAP   A+N+APNPAS
Subjt:  MSQRPGRHQRRPSQGVFMAAVYLSEPPPPAGPGSTVESGGVH-STLLNRPPQQSRSADPAAATAARPPAP--AASNEAPNPAS

TrEMBL top hitse value%identityAlignment
A0A0A0LAM0 Uncharacterized protein3.2e-2178.31Show/hide
Query:  MSQRPGRHQRRPSQGVFMAAVYLSEPPPPAGPGSTVESGGVH-STLLNRPPQQSRSADPAAATAARPPAP--AASNEAPNPAS
        MSQRP RHQRRPSQGVFM A YLS+PPPP GPGSTVESGG H STLL RP QQSRSADP    AARPPAP   A+N+APNPAS
Subjt:  MSQRPGRHQRRPSQGVFMAAVYLSEPPPPAGPGSTVESGGVH-STLLNRPPQQSRSADPAAATAARPPAP--AASNEAPNPAS

A0A5A7TPQ1 Uncharacterized protein4.5e-2380.49Show/hide
Query:  MSQRPGRHQRRPSQGVFMAAVYLSEPPPP--AGPGSTVESGGVHSTLLNRPPQQSRSADPAAATAARPPAPAASNEAPNPAS
        MSQRPGRHQRRPSQGVFMAA YLSEPPPP   GPGSTVESGG HS LL RPPQQSR+ADP    A RPPAPAA+N+A NPAS
Subjt:  MSQRPGRHQRRPSQGVFMAAVYLSEPPPP--AGPGSTVESGGVHSTLLNRPPQQSRSADPAAATAARPPAPAASNEAPNPAS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGCAGCGACCGGGCAGGCACCAGAGGAGGCCTTCGCAGGGCGTTTTCATGGCCGCCGTTTACCTCTCCGAACCGCCGCCGCCGGCCGGACCGGGATCCACGGTCGA
ATCTGGCGGTGTGCACTCGACTCTCCTTAATCGGCCACCACAGCAGAGTCGCAGCGCTGATCCGGCGGCCGCGACGGCAGCAAGGCCTCCTGCTCCAGCGGCGTCGAATG
AAGCTCCGAATCCGGCGAGCTAG
mRNA sequenceShow/hide mRNA sequence
CATAAACATAAAAGAAAATTAGTCCTATCATGTAAACATAACTTAGGTAGAATTATGAGGTTTGAAGTTGGGTAAAAAATCAGACCGCAACCCCATAAATTAGGTAGAAT
TATGAGGTTGTAATTTCCGACTTCGCTTTATAAGTTTGACTCGCAGAGATCGAGAAGTCGTCAAAGAAACCGATTAAACGTACAAAAAATCAGTCGAACTCTACGGTTAC
GCCGGCGACTCTCACTATTTCTCCCTCTGTTTCTCCCCATTTCTCCTCCATTCACAAATCCCATACTCTCAATTCTCAAATCTCCGCCGCAAAATGTCGCAGCGACCGGG
CAGGCACCAGAGGAGGCCTTCGCAGGGCGTTTTCATGGCCGCCGTTTACCTCTCCGAACCGCCGCCGCCGGCCGGACCGGGATCCACGGTCGAATCTGGCGGTGTGCACT
CGACTCTCCTTAATCGGCCACCACAGCAGAGTCGCAGCGCTGATCCGGCGGCCGCGACGGCAGCAAGGCCTCCTGCTCCAGCGGCGTCGAATGAAGCTCCGAATCCGGCG
AGCTAGCGGACCAAGGACTCAACGACGTCGTTTTGTTCCATTGCAATATGAAGATCAAGTGGAAGTAGGTTTTCGTTTTTCGATCTGTCGTTTCGTTTCGTTTTCTGTTT
TTTTTTTTGGGAAATTTGCTGTTAAATCTCACCTTTTCTTTTGAATCAAGAAAAAGAAAATTCTCAGTTTTTTATTTCTTTTTATTTATGGTATTTTTCTATGTTGACCC
GAAGAAAGTGTGGTCTTTGCATTTGGTGTTTTGTGAGCCAGGATCGATGCTGCTCATGCCTGTTGTGTTTTACTCACATTTAAATTGTCCATATCAACGAAAATATTGAT
GTTTTGATTTGGGTTGTTTTTAAATACTAACAAAATGAACTAAAATATTTATAAATATAGTAAATTTTTACTATTTATATGTGATATCTGGAATAGATTGTAAACTGTTA
TCTGTGTCATTGTGGTATTTTGCTATTATTTATAAATATTTTCAATAAT
Protein sequenceShow/hide protein sequence
MSQRPGRHQRRPSQGVFMAAVYLSEPPPPAGPGSTVESGGVHSTLLNRPPQQSRSADPAAATAARPPAPAASNEAPNPAS