CuGenDBv2

Gene ID	Clc10G20580
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	H/ACA ribonucleoprotein complex subunit 4
Genome location	ClcChr10:34082781..34083175
RNA-Seq Expression	Clc10G20580
Synteny	Clc10G20580
Gene Ontology terms	GO:0001522 - pseudouridine synthesis (biological process) GO:0006396 - RNA processing (biological process) GO:0034660 - ncRNA metabolic process (biological process) GO:0003723 - RNA binding (molecular function) GO:0009982 - pseudouridine synthase activity (molecular function)
InterPro domains	IPR012960 - Dyskerin-like IPR020103 - Pseudouridine synthase, catalytic domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7027955.1 H/ACA ribonucleoprotein complex subunit 4, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.9e-18

Show/hide

Query:  MSEVKISHSKNKKKKHRSKDEEVSSAFGSNKQPQKDVAYFMIKPQSFT----------------------------------LLWPQTEYIRYGILNLDK
        MS+V+IS S+ KKKKHRSKDEEVS   GS++QP KDVA F+IKPQSFT                                  L  P  +YIRYGILNLDK
Subjt:  MSEVKISHSKNKKKKHRSKDEEVSSAFGSNKQPQKDVAYFMIKPQSFT----------------------------------LLWPQTEYIRYGILNLDK

Query:  AVNPLTHEVLALIKWVLWVDRTGH
          NP +HEV+A IK +L VD+TGH
Subjt:  AVNPLTHEVLALIKWVLWVDRTGH

XP_022145634.1 H/ACA ribonucleoprotein complex subunit 4 [Momordica charantia]

1.2e-19

52.42

Show/hide

Query:  MSEVKISHSKNKKKKHRSKDEEVSSAFGSNKQPQKDVAYFMIKPQSFT----------------------------------LLWPQTEYIRYGILNLDK
        MSEV+IS S+ KKKKHRSKDE+VS A GS++QPQKD A FMIKPQSFT                                  L  P  EYIRYGILNLDK
Subjt:  MSEVKISHSKNKKKKHRSKDEEVSSAFGSNKQPQKDVAYFMIKPQSFT----------------------------------LLWPQTEYIRYGILNLDK

Query:  AVNPLTHEVLALIKWVLWVDRTGH
          NP +HEV+A IK +L VD+TGH
Subjt:  AVNPLTHEVLALIKWVLWVDRTGH

XP_022941699.1 H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita moschata]

4.9e-18

Show/hide

Query:  MSEVKISHSKNKKKKHRSKDEEVSSAFGSNKQPQKDVAYFMIKPQSFT----------------------------------LLWPQTEYIRYGILNLDK
        MS+V+IS S+ KKKKHRSKDEEVS   GS++QP KDVA F+IKPQSFT                                  L  P  +YIRYGILNLDK
Subjt:  MSEVKISHSKNKKKKHRSKDEEVSSAFGSNKQPQKDVAYFMIKPQSFT----------------------------------LLWPQTEYIRYGILNLDK

Query:  AVNPLTHEVLALIKWVLWVDRTGH
          NP +HEV+A IK +L VD+TGH
Subjt:  AVNPLTHEVLALIKWVLWVDRTGH

XP_023527935.1 LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita pepo subsp. pepo]

8.3e-18

Show/hide

Query:  MSEVKISHSKNKKKKHRSKDEEVSSAFGSNKQPQKDVAYFMIKPQSFT----------------------------------LLWPQTEYIRYGILNLDK
        MS V+IS S+ KKKKHRSKD+EVS A GS++QP KDVA FMIKPQSFT                                  L  P  +YIRYGILNLDK
Subjt:  MSEVKISHSKNKKKKHRSKDEEVSSAFGSNKQPQKDVAYFMIKPQSFT----------------------------------LLWPQTEYIRYGILNLDK

Query:  AVNPLTHEVLALIKWVLWVDRTGH
          NP +HEV+A IK +L V++TGH
Subjt:  AVNPLTHEVLALIKWVLWVDRTGH

XP_023539854.1 H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita pepo subsp. pepo]

4.9e-18

Show/hide

Query:  MSEVKISHSKNKKKKHRSKDEEVSSAFGSNKQPQKDVAYFMIKPQSFT----------------------------------LLWPQTEYIRYGILNLDK
        MS+V+IS S+ KKKKHRSKDEEVS   GS++QP KDVA F+IKPQSFT                                  L  P  +YIRYGILNLDK
Subjt:  MSEVKISHSKNKKKKHRSKDEEVSSAFGSNKQPQKDVAYFMIKPQSFT----------------------------------LLWPQTEYIRYGILNLDK

Query:  AVNPLTHEVLALIKWVLWVDRTGH
          NP +HEV+A IK +L VD+TGH
Subjt:  AVNPLTHEVLALIKWVLWVDRTGH

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CVU2 H/ACA ribonucleoprotein complex subunit 4

5.6e-20

52.42

Show/hide

Query:  MSEVKISHSKNKKKKHRSKDEEVSSAFGSNKQPQKDVAYFMIKPQSFT----------------------------------LLWPQTEYIRYGILNLDK
        MSEV+IS S+ KKKKHRSKDE+VS A GS++QPQKD A FMIKPQSFT                                  L  P  EYIRYGILNLDK
Subjt:  MSEVKISHSKNKKKKHRSKDEEVSSAFGSNKQPQKDVAYFMIKPQSFT----------------------------------LLWPQTEYIRYGILNLDK

Query:  AVNPLTHEVLALIKWVLWVDRTGH
          NP +HEV+A IK +L VD+TGH
Subjt:  AVNPLTHEVLALIKWVLWVDRTGH

A0A6J1F3Q2 H/ACA ribonucleoprotein complex subunit 4-like

4.0e-18

Show/hide

Query:  MSEVKISHSKNKKKKHRSKDEEVSSAFGSNKQPQKDVAYFMIKPQSFT----------------------------------LLWPQTEYIRYGILNLDK
        MS V+IS S+ KKKKHRSKD+EVS A GS++QP KDVA FMIKPQSFT                                  L  P  +YIRYGILNLDK
Subjt:  MSEVKISHSKNKKKKHRSKDEEVSSAFGSNKQPQKDVAYFMIKPQSFT----------------------------------LLWPQTEYIRYGILNLDK

Query:  AVNPLTHEVLALIKWVLWVDRTGH
          NP +HEV+A IK +L V++TGH
Subjt:  AVNPLTHEVLALIKWVLWVDRTGH

A0A6J1FP65 H/ACA ribonucleoprotein complex subunit 4-like

2.4e-18

Show/hide

Query:  MSEVKISHSKNKKKKHRSKDEEVSSAFGSNKQPQKDVAYFMIKPQSFT----------------------------------LLWPQTEYIRYGILNLDK
        MS+V+IS S+ KKKKHRSKDEEVS   GS++QP KDVA F+IKPQSFT                                  L  P  +YIRYGILNLDK
Subjt:  MSEVKISHSKNKKKKHRSKDEEVSSAFGSNKQPQKDVAYFMIKPQSFT----------------------------------LLWPQTEYIRYGILNLDK

Query:  AVNPLTHEVLALIKWVLWVDRTGH
          NP +HEV+A IK +L VD+TGH
Subjt:  AVNPLTHEVLALIKWVLWVDRTGH

A0A6J1I1U9 H/ACA ribonucleoprotein complex subunit 4-like

1.2e-17

49.19

Show/hide

Query:  MSEVKISHSKNKKKKHRSKDEEVSSAFGSNKQPQKDVAYFMIKPQSFT----------------------------------LLWPQTEYIRYGILNLDK
        MS+V+IS S+ KKKKHRSKDEEVS    S++QP KDVA F+IKPQSFT                                  L  P  +YIRYGILNLDK
Subjt:  MSEVKISHSKNKKKKHRSKDEEVSSAFGSNKQPQKDVAYFMIKPQSFT----------------------------------LLWPQTEYIRYGILNLDK

Query:  AVNPLTHEVLALIKWVLWVDRTGH
          NP +HEV+A IK +L VD+TGH
Subjt:  AVNPLTHEVLALIKWVLWVDRTGH

A0A6J1J6M3 H/ACA ribonucleoprotein complex subunit 4-like

4.0e-18

Show/hide

Query:  MSEVKISHSKNKKKKHRSKDEEVSSAFGSNKQPQKDVAYFMIKPQSFT----------------------------------LLWPQTEYIRYGILNLDK
        MS V+IS S+ KKKKHRSKD+EVS A GS++QP KDVA FMIKPQSFT                                  L  P  +YIRYGILNLDK
Subjt:  MSEVKISHSKNKKKKHRSKDEEVSSAFGSNKQPQKDVAYFMIKPQSFT----------------------------------LLWPQTEYIRYGILNLDK

Query:  AVNPLTHEVLALIKWVLWVDRTGH
          NP +HEV+A IK +L V++TGH
Subjt:  AVNPLTHEVLALIKWVLWVDRTGH

SwissProt top hits

e value

%identity

Alignment

G0SGK0 H/ACA ribonucleoprotein complex subunit CBF5

1.1e-04

57.14

Show/hide

Query:  YIRYGILNLDKAVNPLTHEVLALIKWVLWVDRTGH
        Y+  G++NLDK  NP +HEV+A IK +L VD+TGH
Subjt:  YIRYGILNLDKAVNPLTHEVLALIKWVLWVDRTGH

O14007 H/ACA ribonucleoprotein complex subunit cbf5

1.7e-05

51.28

Show/hide

Query:  PQTEYIRYGILNLDKAVNPLTHEVLALIKWVLWVDRTGH
        P  EY+  G++NLDK  NP +HEV+A +K +L V++TGH
Subjt:  PQTEYIRYGILNLDKAVNPLTHEVLALIKWVLWVDRTGH

P40615 H/ACA ribonucleoprotein complex subunit DKC1

8.4e-05

55.56

Show/hide

Query:  EYIRYGILNLDKAVNPLTHEVLALIKWVLWVDRTGH
        EY+R G +NLDK  NP +HEV+A I+ +L V++TGH
Subjt:  EYIRYGILNLDKAVNPLTHEVLALIKWVLWVDRTGH

Q54T81 Probable H/ACA ribonucleoprotein complex subunit 4

4.9e-05

31.31

Show/hide

Query:  KNKKKKHRSKDEEVSSAFGSNKQPQKDVAYFMIKPQSFTLLWPQT------------------EYIRYGILNLDKAVNPLTHEVLALIKWVLWVDRTGH
        K+K K      +EV       K P  D + + +  +++  L  +T                  EY++YGI+NLDK  NP +HEV+A I+ +L V +TGH
Subjt:  KNKKKKHRSKDEEVSSAFGSNKQPQKDVAYFMIKPQSFTLLWPQT------------------EYIRYGILNLDKAVNPLTHEVLALIKWVLWVDRTGH

Q9LD90 H/ACA ribonucleoprotein complex subunit 4

4.3e-09

36.29

Show/hide

Query:  MSEVKISHSKNKKKKHRSKDEEVSSAFGSNKQPQKDVAYFMIKPQSFT----------------------------------LLWPQTEYIRYGILNLDK
        M+EV ISHSK KK+     D               D   +MIKPQSFT                                  L  P  EYIRYG++NLDK
Subjt:  MSEVKISHSKNKKKKHRSKDEEVSSAFGSNKQPQKDVAYFMIKPQSFT----------------------------------LLWPQTEYIRYGILNLDK

Query:  AVNPLTHEVLALIKWVLWVDRTGH
          NP +HEV+A IK +L V++TGH
Subjt:  AVNPLTHEVLALIKWVLWVDRTGH

Arabidopsis top hits

e value

%identity

Alignment

AT3G57150.1 homologue of NAP57

3.0e-10

36.29

Show/hide

Query:  MSEVKISHSKNKKKKHRSKDEEVSSAFGSNKQPQKDVAYFMIKPQSFT----------------------------------LLWPQTEYIRYGILNLDK
        M+EV ISHSK KK+     D               D   +MIKPQSFT                                  L  P  EYIRYG++NLDK
Subjt:  MSEVKISHSKNKKKKHRSKDEEVSSAFGSNKQPQKDVAYFMIKPQSFT----------------------------------LLWPQTEYIRYGILNLDK

Query:  AVNPLTHEVLALIKWVLWVDRTGH
          NP +HEV+A IK +L V++TGH
Subjt:  AVNPLTHEVLALIKWVLWVDRTGH

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCGGAAGTTAAAATTTCTCATTCAAAGAATAAGAAGAAGAAGCACCGGAGCAAGGATGAGGAAGTGTCATCGGCTTTTGGTTCCAACAAGCAACCACAAAAGGATGT
TGCTTATTTTATGATCAAGCCTCAGAGTTTTACTCTTCTGTGGCCTCAGACTGAGTATATTAGGTATGGTATTCTCAATCTTGATAAAGCAGTGAATCCTTTGACGCACG
AAGTTCTGGCTTTGATTAAGTGGGTTCTTTGGGTTGATAGAACGGGCCATGTGGTACTCTCGACCCGAATGTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MSEVKISHSKNKKKKHRSKDEEVSSAFGSNKQPQKDVAYFMIKPQSFTLLWPQTEYIRYGILNLDKAVNPLTHEVLALIKWVLWVDRTGHVVLSTRM

Clc10G20580 (gene) of Watermelon (cordophanus) v2 genome