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Clc10G20860 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc10G20860
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionlight-harvesting complex-like protein OHP1, chloroplastic
Genome locationClcChr10:34236057..34236659
RNA-Seq ExpressionClc10G20860
SyntenyClc10G20860
Gene Ontology termsGO:0009535 - chloroplast thylakoid membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004137791.1 light-harvesting complex-like protein OHP1, chloroplastic [Cucumis sativus]9.1e-4067.11Show/hide
Query:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIG-SFRANNTRARAPFRVQ-AAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFIVELV
        MASSS I  SSL PARA  CNHQD R CLFQIG S RAN++RAR  FR+Q AAKPPAGVELPKVEPKF+APFLGFTKTAEIWNSRACMIGLIG F+VEL 
Subjt:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIG-SFRANNTRARAPFRVQ-AAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFIVELV

Query:  RFSFLFNIKKSFFFVPSISKFMGFICRVFQILNKGILQVIGVDVGKGLDLPL
                                      ILNKGILQVIGVDVGKGLDLPL
Subjt:  RFSFLFNIKKSFFFVPSISKFMGFICRVFQILNKGILQVIGVDVGKGLDLPL

XP_022145630.1 light-harvesting complex-like protein OHP1, chloroplastic [Momordica charantia]4.2e-4570Show/hide
Query:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIGSFRANNTRARAPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFIVELVRF
        MASSS + SSSLLPARAP  N QDGRLCLFQIGS RANN+RAR PFRVQAAK PAGVELPKVEPKFEAPFLGFTKTAEIWNSRACM+GL+G FIVEL   
Subjt:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIGSFRANNTRARAPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFIVELVRF

Query:  SFLFNIKKSFFFVPSISKFMGFICRVFQILNKGILQVIGVDVGKGLDLPL
                                    IL+KGILQVIGVDVGKGLDLPL
Subjt:  SFLFNIKKSFFFVPSISKFMGFICRVFQILNKGILQVIGVDVGKGLDLPL

XP_022934608.1 light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita moschata]1.2e-4771.33Show/hide
Query:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIGSFRANNTRARAPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFIVELVRF
        MASS+TI SSSLLPARAPIC+ QDGRLCLFQ+GS RANN RARAPFRVQAAKPPAGVELPKV+PKFEAPFLGFTKTAEIWNSRA MIGLIG F+VEL   
Subjt:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIGSFRANNTRARAPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFIVELVRF

Query:  SFLFNIKKSFFFVPSISKFMGFICRVFQILNKGILQVIGVDVGKGLDLPL
                                    ILNKGILQVIGVD+GKGLDLPL
Subjt:  SFLFNIKKSFFFVPSISKFMGFICRVFQILNKGILQVIGVDVGKGLDLPL

XP_023526506.1 light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita pepo subsp. pepo]5.9e-4770.67Show/hide
Query:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIGSFRANNTRARAPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFIVELVRF
        MASS+TI SSSLLPA APIC+ QDGRLCLFQ+GS RANN RARAPFRVQAAKPPAGVELPKV+PKFEAPFLGFTKTAEIWNSRA MIGLIG F+VEL   
Subjt:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIGSFRANNTRARAPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFIVELVRF

Query:  SFLFNIKKSFFFVPSISKFMGFICRVFQILNKGILQVIGVDVGKGLDLPL
                                    ILNKGILQVIGVD+GKGLDLPL
Subjt:  SFLFNIKKSFFFVPSISKFMGFICRVFQILNKGILQVIGVDVGKGLDLPL

XP_038905156.1 light-harvesting complex-like protein OHP1, chloroplastic [Benincasa hispida]1.8e-4872Show/hide
Query:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIGSFRANNTRARAPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFIVELVRF
        MASSS I SSSLLPARAPIC+ QDGRLCLFQIGS RANN+R+R PFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAE+WNSRACMIGLIG F+VEL   
Subjt:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIGSFRANNTRARAPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFIVELVRF

Query:  SFLFNIKKSFFFVPSISKFMGFICRVFQILNKGILQVIGVDVGKGLDLPL
                                    ILNKGILQVIGVDVGKGLDLPL
Subjt:  SFLFNIKKSFFFVPSISKFMGFICRVFQILNKGILQVIGVDVGKGLDLPL

TrEMBL top hitse value%identityAlignment
A0A0A0LAI0 Uncharacterized protein4.4e-4067.11Show/hide
Query:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIG-SFRANNTRARAPFRVQ-AAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFIVELV
        MASSS I  SSL PARA  CNHQD R CLFQIG S RAN++RAR  FR+Q AAKPPAGVELPKVEPKF+APFLGFTKTAEIWNSRACMIGLIG F+VEL 
Subjt:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIG-SFRANNTRARAPFRVQ-AAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFIVELV

Query:  RFSFLFNIKKSFFFVPSISKFMGFICRVFQILNKGILQVIGVDVGKGLDLPL
                                      ILNKGILQVIGVDVGKGLDLPL
Subjt:  RFSFLFNIKKSFFFVPSISKFMGFICRVFQILNKGILQVIGVDVGKGLDLPL

A0A5A7TRS8 High-light-induced protein4.1e-3867.76Show/hide
Query:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIG-SFRANNTRARAPFRVQ-AAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFIVELV
        MASSS I  SSL PARA   N QDGR  LFQIG S RANN+RAR  FRVQ AAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTF+VEL 
Subjt:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIG-SFRANNTRARAPFRVQ-AAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFIVELV

Query:  RFSFLFNIKKSFFFVPSISKFMGFICRVFQILNKGILQVIGVDVGKGLDLPL
                                      ILNK ILQVIGVDVGKGLDLPL
Subjt:  RFSFLFNIKKSFFFVPSISKFMGFICRVFQILNKGILQVIGVDVGKGLDLPL

A0A6J1CV10 light-harvesting complex-like protein OHP1, chloroplastic2.0e-4570Show/hide
Query:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIGSFRANNTRARAPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFIVELVRF
        MASSS + SSSLLPARAP  N QDGRLCLFQIGS RANN+RAR PFRVQAAK PAGVELPKVEPKFEAPFLGFTKTAEIWNSRACM+GL+G FIVEL   
Subjt:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIGSFRANNTRARAPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFIVELVRF

Query:  SFLFNIKKSFFFVPSISKFMGFICRVFQILNKGILQVIGVDVGKGLDLPL
                                    IL+KGILQVIGVDVGKGLDLPL
Subjt:  SFLFNIKKSFFFVPSISKFMGFICRVFQILNKGILQVIGVDVGKGLDLPL

A0A6J1F851 light-harvesting complex-like protein OHP1, chloroplastic5.7e-4871.33Show/hide
Query:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIGSFRANNTRARAPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFIVELVRF
        MASS+TI SSSLLPARAPIC+ QDGRLCLFQ+GS RANN RARAPFRVQAAKPPAGVELPKV+PKFEAPFLGFTKTAEIWNSRA MIGLIG F+VEL   
Subjt:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIGSFRANNTRARAPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFIVELVRF

Query:  SFLFNIKKSFFFVPSISKFMGFICRVFQILNKGILQVIGVDVGKGLDLPL
                                    ILNKGILQVIGVD+GKGLDLPL
Subjt:  SFLFNIKKSFFFVPSISKFMGFICRVFQILNKGILQVIGVDVGKGLDLPL

A0A6J1J0W8 light-harvesting complex-like protein OHP1, chloroplastic5.7e-4871.33Show/hide
Query:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIGSFRANNTRARAPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFIVELVRF
        MASS+TI SSSLLPARAPIC+ QDGRLCLFQ+GS RANN RARAPFRVQAAKPPAGVELPKV+PKFEAPFLGFTKTAEIWNSRA MIGLIG F+VEL   
Subjt:  MASSSTIFSSSLLPARAPICNHQDGRLCLFQIGSFRANNTRARAPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFIVELVRF

Query:  SFLFNIKKSFFFVPSISKFMGFICRVFQILNKGILQVIGVDVGKGLDLPL
                                    ILNKGILQVIGVD+GKGLDLPL
Subjt:  SFLFNIKKSFFFVPSISKFMGFICRVFQILNKGILQVIGVDVGKGLDLPL

SwissProt top hitse value%identityAlignment
O81208 Light-harvesting complex-like protein OHP1, chloroplastic3.6e-2346.67Show/hide
Query:  SSTIFSSSLLPARAPICNHQDGR---LCLFQIGSFRANNTRARAPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFIVELVRF
        SS+  SSSL    + +  H  GR   LC            R + PF V+AAK P GV +PK +PK +  FLGFT+TAEIWNSRACMIGLIGTFIVEL   
Subjt:  SSTIFSSSLLPARAPICNHQDGR---LCLFQIGSFRANNTRARAPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFIVELVRF

Query:  SFLFNIKKSFFFVPSISKFMGFICRVFQILNKGILQVIGVDVGKGLDLPL
                                    ILNKGIL++IGV++GKGLDLPL
Subjt:  SFLFNIKKSFFFVPSISKFMGFICRVFQILNKGILQVIGVDVGKGLDLPL

Arabidopsis top hitse value%identityAlignment
AT5G02120.1 one helix protein2.6e-2446.67Show/hide
Query:  SSTIFSSSLLPARAPICNHQDGR---LCLFQIGSFRANNTRARAPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFIVELVRF
        SS+  SSSL    + +  H  GR   LC            R + PF V+AAK P GV +PK +PK +  FLGFT+TAEIWNSRACMIGLIGTFIVEL   
Subjt:  SSTIFSSSLLPARAPICNHQDGR---LCLFQIGSFRANNTRARAPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFIVELVRF

Query:  SFLFNIKKSFFFVPSISKFMGFICRVFQILNKGILQVIGVDVGKGLDLPL
                                    ILNKGIL++IGV++GKGLDLPL
Subjt:  SFLFNIKKSFFFVPSISKFMGFICRVFQILNKGILQVIGVDVGKGLDLPL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCCTCCTCTACGATTTTTTCATCTTCTCTTCTTCCGGCCAGAGCTCCGATCTGTAACCATCAAGACGGCCGACTCTGTCTCTTTCAAATTGGGTCTTTCCGTGC
CAATAACACCAGGGCTCGTGCCCCTTTCAGGGTTCAGGCCGCAAAGCCCCCGGCTGGAGTTGAATTGCCAAAAGTAGAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCA
CTAAAACTGCTGAAATCTGGAATTCCAGAGCCTGCATGATAGGTCTTATTGGGACTTTCATAGTGGAGCTGGTGAGGTTTTCTTTTCTTTTTAATATAAAGAAAAGTTTC
TTCTTTGTACCTTCTATATCTAAGTTTATGGGTTTTATTTGTCGGGTTTTTCAGATATTGAACAAAGGAATACTTCAGGTGATTGGAGTCGATGTTGGGAAAGGCCTGGA
TCTTCCTCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCCTCCTCTACGATTTTTTCATCTTCTCTTCTTCCGGCCAGAGCTCCGATCTGTAACCATCAAGACGGCCGACTCTGTCTCTTTCAAATTGGGTCTTTCCGTGC
CAATAACACCAGGGCTCGTGCCCCTTTCAGGGTTCAGGCCGCAAAGCCCCCGGCTGGAGTTGAATTGCCAAAAGTAGAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCA
CTAAAACTGCTGAAATCTGGAATTCCAGAGCCTGCATGATAGGTCTTATTGGGACTTTCATAGTGGAGCTGGTGAGGTTTTCTTTTCTTTTTAATATAAAGAAAAGTTTC
TTCTTTGTACCTTCTATATCTAAGTTTATGGGTTTTATTTGTCGGGTTTTTCAGATATTGAACAAAGGAATACTTCAGGTGATTGGAGTCGATGTTGGGAAAGGCCTGGA
TCTTCCTCTTTGA
Protein sequenceShow/hide protein sequence
MASSSTIFSSSLLPARAPICNHQDGRLCLFQIGSFRANNTRARAPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFIVELVRFSFLFNIKKSF
FFVPSISKFMGFICRVFQILNKGILQVIGVDVGKGLDLPL