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Clc11G00060 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G00060
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTPD1 protein homolog 1-like
Genome locationClcChr11:98233..99717
RNA-Seq ExpressionClc11G00060
SyntenyClc11G00060
Gene Ontology termsGO:0001709 - cell fate determination (biological process)
GO:0016020 - membrane (cellular component)
InterPro domainsIPR040361 - Tapetum determinant 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA7037266.1 unnamed protein product [Microthlaspi erraticum]1.6e-2757.84Show/hide
Query:  EKCEKNSIAISQGEGGRQFNGIPTYIVEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRIAVDDCLINNGRPIPPGITLSFQYATNFQFPLSVSSLK
        EKC+++ I ++Q       NGIP Y VEITNQC + C+I  +H+ CG FSSAKLINPR+FKRI  DDCL+NNG+P+P G TLSF YA  F +PLSVS + 
Subjt:  EKCEKNSIAISQGEGGRQFNGIPTYIVEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRIAVDDCLINNGRPIPPGITLSFQYATNFQFPLSVSSLK

Query:  CT
        C+
Subjt:  CT

KAF6145072.1 hypothetical protein GIB67_013423 [Kingdonia uniflora]1.6e-2759.41Show/hide
Query:  EKCEKNSIAISQGEGGRQFNGIPTYIVEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRIAVDDCLINNGRPIPPGITLSFQYATNFQFPLSVSSLK
        E C KN IA+ QG      NGIPTY V+I N C + C+I ++H+ CG FSSA++INPR+FKRI  DDCL+NNG PI PG +LSFQYA +FQ+PL VSS+ 
Subjt:  EKCEKNSIAISQGEGGRQFNGIPTYIVEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRIAVDDCLINNGRPIPPGITLSFQYATNFQFPLSVSSLK

Query:  C
        C
Subjt:  C

RZC59460.1 hypothetical protein C5167_006762 [Papaver somniferum]2.5e-2859.41Show/hide
Query:  EKCEKNSIAISQGEGGRQFNGIPTYIVEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRIAVDDCLINNGRPIPPGITLSFQYATNFQFPLSVSSLK
        EKC K+ I ++QG      NGIPTY VEI N C + C I  +HL CG FSSA+LINPR+FKRI  DDC++N+G+P+P G TLSFQYA  F++PLSVSS+ 
Subjt:  EKCEKNSIAISQGEGGRQFNGIPTYIVEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRIAVDDCLINNGRPIPPGITLSFQYATNFQFPLSVSSLK

Query:  C
        C
Subjt:  C

XP_026379521.1 protein TAPETUM DETERMINANT 1-like [Papaver somniferum]2.5e-2859.41Show/hide
Query:  EKCEKNSIAISQGEGGRQFNGIPTYIVEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRIAVDDCLINNGRPIPPGITLSFQYATNFQFPLSVSSLK
        EKC K+ I ++QG      NGIPTY VEI N C + C I  +HL CG FSSA+LINPR+FKRI  DDC++N+G+P+P G TLSFQYA  F++PLSVSS+ 
Subjt:  EKCEKNSIAISQGEGGRQFNGIPTYIVEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRIAVDDCLINNGRPIPPGITLSFQYATNFQFPLSVSSLK

Query:  C
        C
Subjt:  C

XP_026382275.1 protein TAPETUM DETERMINANT 1-like [Papaver somniferum]3.3e-2859.41Show/hide
Query:  EKCEKNSIAISQGEGGRQFNGIPTYIVEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRIAVDDCLINNGRPIPPGITLSFQYATNFQFPLSVSSLK
        EKC K+ I ++QG      NGIPTY VEI N C + C I  +HL CG FSSA+LINPR+FKRI  DDC++N+G+P+P G TLSFQYA  F++PLSVSS+ 
Subjt:  EKCEKNSIAISQGEGGRQFNGIPTYIVEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRIAVDDCLINNGRPIPPGITLSFQYATNFQFPLSVSSLK

Query:  C
        C
Subjt:  C

TrEMBL top hitse value%identityAlignment
A0A1J3EQ76 Uncharacterized protein (Fragment)1.0e-2757.84Show/hide
Query:  EKCEKNSIAISQGEGGRQFNGIPTYIVEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRIAVDDCLINNGRPIPPGITLSFQYATNFQFPLSVSSLK
        EKC+++ I ++Q       NGIP Y VEITNQC + C I  +H+ CG FSSAKLINPR+FKRI  DDCL+NNG+P+P G TLSF YA  F +PLSVS + 
Subjt:  EKCEKNSIAISQGEGGRQFNGIPTYIVEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRIAVDDCLINNGRPIPPGITLSFQYATNFQFPLSVSSLK

Query:  CT
        C+
Subjt:  CT

A0A1J3GVG9 Uncharacterized protein (Fragment)1.0e-2757.84Show/hide
Query:  EKCEKNSIAISQGEGGRQFNGIPTYIVEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRIAVDDCLINNGRPIPPGITLSFQYATNFQFPLSVSSLK
        EKC+++ I ++Q       NGIP Y VEITNQC + C I  +H+ CG FSSAKLINPR+FKRI  DDCL+NNG+P+P G TLSF YA  F +PLSVS + 
Subjt:  EKCEKNSIAISQGEGGRQFNGIPTYIVEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRIAVDDCLINNGRPIPPGITLSFQYATNFQFPLSVSSLK

Query:  CT
        C+
Subjt:  CT

A0A4Y7JHE6 Uncharacterized protein1.2e-2859.41Show/hide
Query:  EKCEKNSIAISQGEGGRQFNGIPTYIVEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRIAVDDCLINNGRPIPPGITLSFQYATNFQFPLSVSSLK
        EKC K+ I ++QG      NGIPTY VEI N C + C I  +HL CG FSSA+LINPR+FKRI  DDC++N+G+P+P G TLSFQYA  F++PLSVSS+ 
Subjt:  EKCEKNSIAISQGEGGRQFNGIPTYIVEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRIAVDDCLINNGRPIPPGITLSFQYATNFQFPLSVSSLK

Query:  C
        C
Subjt:  C

A0A6D2JJ26 Ribosomal_S5_C domain-containing protein7.9e-2857.84Show/hide
Query:  EKCEKNSIAISQGEGGRQFNGIPTYIVEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRIAVDDCLINNGRPIPPGITLSFQYATNFQFPLSVSSLK
        EKC+++ I ++Q       NGIP Y VEITNQC + C+I  +H+ CG FSSAKLINPR+FKRI  DDCL+NNG+P+P G TLSF YA  F +PLSVS + 
Subjt:  EKCEKNSIAISQGEGGRQFNGIPTYIVEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRIAVDDCLINNGRPIPPGITLSFQYATNFQFPLSVSSLK

Query:  CT
        C+
Subjt:  CT

A0A7J7LRA1 Uncharacterized protein7.9e-2859.41Show/hide
Query:  EKCEKNSIAISQGEGGRQFNGIPTYIVEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRIAVDDCLINNGRPIPPGITLSFQYATNFQFPLSVSSLK
        E C KN IA+ QG      NGIPTY V+I N C + C+I ++H+ CG FSSA++INPR+FKRI  DDCL+NNG PI PG +LSFQYA +FQ+PL VSS+ 
Subjt:  EKCEKNSIAISQGEGGRQFNGIPTYIVEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRIAVDDCLINNGRPIPPGITLSFQYATNFQFPLSVSSLK

Query:  C
        C
Subjt:  C

SwissProt top hitse value%identityAlignment
A8MS78 Uncharacterized protein At1g058351.8e-0537.14Show/hide
Query:  VEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRI--AVDDCLINNGRPIPPGITLSFQYATNFQFPL
        VE+ N+C   C I +L LKC  F  + L++P   + +  +  +C++N+G P+ P  TLSF Y+   QF L
Subjt:  VEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRI--AVDDCLINNGRPIPPGITLSFQYATNFQFPL

Q1G3T1 TPD1 protein homolog 14.9e-2748.51Show/hide
Query:  EKCEKNSIAISQGEGGRQFNGIPTYIVEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRIAVDDCLINNGRPIPPGITLSFQYATNFQFPLSVSSLK
        + C K+ I + QG      +G+P+Y VEI N C ++C+I ++H+ CG FSS +L+NPR+F+R+  DDCL+N+G+P+ PG +LSFQYA +F +PLSV+S+ 
Subjt:  EKCEKNSIAISQGEGGRQFNGIPTYIVEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRIAVDDCLINNGRPIPPGITLSFQYATNFQFPLSVSSLK

Query:  C
        C
Subjt:  C

Q2QR54 TPD1 protein homolog 1A1.7e-1942.16Show/hide
Query:  NSIAISQGEGGRQFNGIPTYIVEITNQCR------NNCSIYDLHLKCGSFSSAKLINPRIFKRIAVDDCLINNGRPIPPGITLSFQYATNFQFPLSVSSL
        + IAI QG      +G+P Y V++ N+C         C+I  +H++CG FSS  L++PR+F+R+  DDCL+N+GRP+  G T+SF+Y  +F + LSVS  
Subjt:  NSIAISQGEGGRQFNGIPTYIVEITNQCR------NNCSIYDLHLKCGSFSSAKLINPRIFKRIAVDDCLINNGRPIPPGITLSFQYATNFQFPLSVSSL

Query:  KC
         C
Subjt:  KC

Q6TLJ2 Protein TAPETUM DETERMINANT 12.6e-2856.44Show/hide
Query:  EKCEKNSIAISQGEGGRQFNGIPTYIVEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRIAVDDCLINNGRPIPPGITLSFQYATNFQFPLSVSSLK
        EKC+   I ++Q       NGIP Y+VEITNQC + C I  +H+ CG FSSAKLINPR+FKRI  DDCL+NNG+P+P G TLSF YA  F + LSV+ + 
Subjt:  EKCEKNSIAISQGEGGRQFNGIPTYIVEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRIAVDDCLINNGRPIPPGITLSFQYATNFQFPLSVSSLK

Query:  C
        C
Subjt:  C

Q8S6P9 TPD1 protein homolog 1B5.8e-2039.6Show/hide
Query:  EKCEKNSIAISQGEGGRQFNGIPTYIVEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRIAVDDCLINNGRPIPPGITLSFQYATNFQFPLSVSSLK
        + C + ++ + Q       +GIPTY VEI N C   C++YD+H+ CG F+SA+L++P  F+RI  +DCL+  G  + P   +SFQY+ +F +PL+V+++ 
Subjt:  EKCEKNSIAISQGEGGRQFNGIPTYIVEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRIAVDDCLINNGRPIPPGITLSFQYATNFQFPLSVSSLK

Query:  C
        C
Subjt:  C

Arabidopsis top hitse value%identityAlignment
AT1G05835.1 PHD finger protein1.3e-0637.14Show/hide
Query:  VEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRI--AVDDCLINNGRPIPPGITLSFQYATNFQFPL
        VE+ N+C   C I +L LKC  F  + L++P   + +  +  +C++N+G P+ P  TLSF Y+   QF L
Subjt:  VEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRI--AVDDCLINNGRPIPPGITLSFQYATNFQFPL

AT1G32583.1 FUNCTIONS IN: molecular_function unknown3.5e-2848.51Show/hide
Query:  EKCEKNSIAISQGEGGRQFNGIPTYIVEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRIAVDDCLINNGRPIPPGITLSFQYATNFQFPLSVSSLK
        + C K+ I + QG      +G+P+Y VEI N C ++C+I ++H+ CG FSS +L+NPR+F+R+  DDCL+N+G+P+ PG +LSFQYA +F +PLSV+S+ 
Subjt:  EKCEKNSIAISQGEGGRQFNGIPTYIVEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRIAVDDCLINNGRPIPPGITLSFQYATNFQFPLSVSSLK

Query:  C
        C
Subjt:  C

AT4G24972.1 tapetum determinant 11.9e-2956.44Show/hide
Query:  EKCEKNSIAISQGEGGRQFNGIPTYIVEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRIAVDDCLINNGRPIPPGITLSFQYATNFQFPLSVSSLK
        EKC+   I ++Q       NGIP Y+VEITNQC + C I  +H+ CG FSSAKLINPR+FKRI  DDCL+NNG+P+P G TLSF YA  F + LSV+ + 
Subjt:  EKCEKNSIAISQGEGGRQFNGIPTYIVEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRIAVDDCLINNGRPIPPGITLSFQYATNFQFPLSVSSLK

Query:  C
        C
Subjt:  C

AT4G32105.1 Beta-1,3-N-Acetylglucosaminyltransferase family protein7.6e-0729.79Show/hide
Query:  CEKNSIAISQGEGGRQFNGIPTYIVEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRIAVDDCLINNGRPIPPGITLSFQYATNFQFPLSV
        C  N +++ Q + G+     P + V +TN C NNC      L C  F S   +   +  + + D CL+N G  I P +   F Y  +  F L V
Subjt:  CEKNSIAISQGEGGRQFNGIPTYIVEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRIAVDDCLINNGRPIPPGITLSFQYATNFQFPLSV

AT4G32110.1 Beta-1,3-N-Acetylglucosaminyltransferase family protein4.7e-0930.77Show/hide
Query:  ASILFHLLLLASFHSIGGTLEEKCEKNSIAISQGEGGRQFNGIPTYIVEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRIAVDDCLINNGRPIPPG
        AS    LL L  F +        C  NS+++ Q + G+     P + V +TN C NNC   +  L C  F+S   I+  +  + + D CL+N G+ I P 
Subjt:  ASILFHLLLLASFHSIGGTLEEKCEKNSIAISQGEGGRQFNGIPTYIVEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRIAVDDCLINNGRPIPPG

Query:  ITLSFQYATNFQFPLSV
        + + F+Y  +  F L V
Subjt:  ITLSFQYATNFQFPLSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTAAGGCTGCGGCAACTTCGTTGTTTGGAGCTTCAATTTTATTCCATCTCCTTTTACTTGCATCCTTTCATTCTATAGGTGGAACATTAGAGGAAAAATGCGAAAA
GAATTCGATAGCAATAAGCCAAGGAGAAGGGGGGCGGCAGTTCAATGGGATACCAACGTATATAGTGGAGATAACAAACCAATGCAGGAACAATTGCAGCATCTACGATT
TGCATTTGAAATGTGGATCATTCAGCTCAGCCAAGTTAATAAACCCTCGAATCTTCAAGCGCATTGCGGTCGATGATTGTCTTATCAACAATGGAAGACCCATCCCTCCA
GGAATTACTCTTTCTTTTCAATATGCTACTAACTTTCAGTTTCCACTTTCGGTTTCCTCTCTCAAATGTACCAATTCACATTAA
mRNA sequenceShow/hide mRNA sequence
CGCGCGTGTAATTTACCAAAAAAGAAAAAAGCAATTAAGAAAGCCTTGTATTTAAGCAAACGAATATTTCAGCAATATTATTTGATATTTGGGTTTTGAAGGTGTGTTGC
GATGGTTAAGGCTGCGGCAACTTCGTTGTTTGGAGCTTCAATTTTATTCCATCTCCTTTTACTTGCATCCTTTCATTCTATAGGTGGAACATTAGAGGAAAAATGCGAAA
AGAATTCGATAGCAATAAGCCAAGGAGAAGGGGGGCGGCAGTTCAATGGGATACCAACGTATATAGTGGAGATAACAAACCAATGCAGGAACAATTGCAGCATCTACGAT
TTGCATTTGAAATGTGGATCATTCAGCTCAGCCAAGTTAATAAACCCTCGAATCTTCAAGCGCATTGCGGTCGATGATTGTCTTATCAACAATGGAAGACCCATCCCTCC
AGGAATTACTCTTTCTTTTCAATATGCTACTAACTTTCAGTTTCCACTTTCGGTTTCCTCTCTCAAATGTACCAATTCACATTAATACCTCATCGTTAAGGGAAAATTTT
AAGATTACTTTATGGTTGTTTTGTATTTATATTGATAATGTTTTCACTCCAACTTGTTTTATATCTTATGCATTTTATTATACAATAACCTGTTTTCGTCCTTAAATATG
TTCGATTTAATTAATATATGAAGGTGTGCAAATTGATTATCCTC
Protein sequenceShow/hide protein sequence
MVKAAATSLFGASILFHLLLLASFHSIGGTLEEKCEKNSIAISQGEGGRQFNGIPTYIVEITNQCRNNCSIYDLHLKCGSFSSAKLINPRIFKRIAVDDCLINNGRPIPP
GITLSFQYATNFQFPLSVSSLKCTNSH