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Clc11G00910 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc11G00910
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionSm domain-containing protein
Genome locationClcChr11:1030657..1035265
RNA-Seq ExpressionClc11G00910
SyntenyClc11G00910
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0030490 - maturation of SSU-rRNA (biological process)
GO:0000932 - P-body (cellular component)
GO:0005681 - spliceosomal complex (cellular component)
GO:0005688 - U6 snRNP (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0005732 - small nucleolar ribonucleoprotein complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR016487 - Sm-like protein Lsm6/SmF


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599859.1 Sm-like protein LSM36B, partial [Cucurbita argyrosperma subsp. sororia]8.8e-1593.75Show/hide
Query:  DRRKLEMSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA
        DRRK EMSIGGEKGSASTKTPADFLKSIRG PVVVKLNSGVDYRGI A
Subjt:  DRRKLEMSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA
KAG6600796.1 Eukaryotic translation initiation factor 2 subunit 3, Y-linked, partial [Cucurbita argyrosperma subsp. sororia]3.6e-1683.87Show/hide
Query:  TGSSVFSSSF---YDRRKLEMSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA
        T SSV SS F    DRRK EMSIGGEKGS STKTPADFLKSIRGRPVVVKLNSGVDYRGI A
Subjt:  TGSSVFSSSF---YDRRKLEMSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA
TKS07621.1 hypothetical protein D5086_0000110870 [Populus alba]8.3e-1389.13Show/hide
Query:  RKLEMSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA
        RK +MS GGEKGSA+TKTPADFLKSIRGRPVVVKLNSGVDYRGI A
Subjt:  RKLEMSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA
XP_022988243.1 uncharacterized protein LOC111485552 [Cucurbita maxima]8.8e-1593.75Show/hide
Query:  DRRKLEMSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA
        DRRK EMSIGGEKGSASTKTPADFLKSIRG PVVVKLNSGVDYRGI A
Subjt:  DRRKLEMSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA
XP_023539899.1 uncharacterized protein LOC111800438 [Cucurbita pepo subsp. pepo]8.8e-1593.75Show/hide
Query:  DRRKLEMSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA
        DRRK EMSIGGEKGSASTKTPADFLKSIRG PVVVKLNSGVDYRGI A
Subjt:  DRRKLEMSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA
TrEMBL top hitse value%identityAlignment
A0A0A0KSS9 Sm domain-containing protein5.2e-1397.62Show/hide
Query:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA
        MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGI A
Subjt:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA
A0A4U5QCB4 Sm domain-containing protein4.0e-1389.13Show/hide
Query:  RKLEMSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA
        RK +MS GGEKGSA+TKTPADFLKSIRGRPVVVKLNSGVDYRGI A
Subjt:  RKLEMSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA
A0A6J1DNH0 sm-like protein LSM36B5.2e-1397.62Show/hide
Query:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA
        MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGI A
Subjt:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA
A0A6J1JLP5 uncharacterized protein LOC1114855524.3e-1593.75Show/hide
Query:  DRRKLEMSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA
        DRRK EMSIGGEKGSASTKTPADFLKSIRG PVVVKLNSGVDYRGI A
Subjt:  DRRKLEMSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA
A0A6M2EGR7 Sm domain-containing protein4.0e-1389.13Show/hide
Query:  RKLEMSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA
        RK +MS GGEKGSA+TKTPADFLKSIRGRPVVVKLNSGVDYRGI A
Subjt:  RKLEMSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA
SwissProt top hitse value%identityAlignment
O22823 Sm-like protein LSM36B2.8e-1185Show/hide
Query:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGI
        MS  GEK S +TKTPADFLKSIRG+PVVVKLNSGVDYRGI
Subjt:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGI
P62312 U6 snRNA-associated Sm-like protein LSm69.2e-0773.53Show/hide
Query:  SASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA
        S   +TP+DFLK I GRPVVVKLNSGVDYRG+ A
Subjt:  SASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA
P62313 U6 snRNA-associated Sm-like protein LSm69.2e-0773.53Show/hide
Query:  SASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA
        S   +TP+DFLK I GRPVVVKLNSGVDYRG+ A
Subjt:  SASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA
Q4PG71 U6 snRNA-associated Sm-like protein LSm67.3e-0445.24Show/hide
Query:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA
        MS   ++ +A   +P DFLK + G+ V V+LNSG+DYRG+ +
Subjt:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFA
Q9M1Z3 Sm-like protein LSM6A5.2e-1091.18Show/hide
Query:  EKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRG
        EK S +TKTPADFLKSIRGRPVVVKLNSGVDYRG
Subjt:  EKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRG
Arabidopsis top hitse value%identityAlignment
AT2G43810.1 Small nuclear ribonucleoprotein family protein2.0e-1285Show/hide
Query:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGI
        MS  GEK S +TKTPADFLKSIRG+PVVVKLNSGVDYRGI
Subjt:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGI
AT2G43810.2 Small nuclear ribonucleoprotein family protein2.0e-1285Show/hide
Query:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGI
        MS  GEK S +TKTPADFLKSIRG+PVVVKLNSGVDYRGI
Subjt:  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGI
AT3G59810.1 Small nuclear ribonucleoprotein family protein3.7e-1191.18Show/hide
Query:  EKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRG
        EK S +TKTPADFLKSIRGRPVVVKLNSGVDYRG
Subjt:  EKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGAATCGACGACTCATGAGTTAATCCAGCCGCTGACAGGATCTTCAGTTTTCTCGTCTTCATTTTACGATAGAAGAAAATTAGAGATGAGTATTGGTGGTGAAAA
AGGTTCTGCATCAACAAAGACACCAGCAGACTTTCTCAAATCAATTCGGGGCCGTCCCGTAGTTGTGAAACTCAATTCTGGTGTTGACTACCGAGGTATATTTGCTTCTA
CTTTTCTTTTGCCTTGGTCCTTGGATAACTCTCTACCTGTTCTATTTGGTATTTTATTCTCAGAATTGTATCATTACTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGAGAATCGACGACTCATGAGTTAATCCAGCCGCTGACAGGATCTTCAGTTTTCTCGTCTTCATTTTACGATAGAAGAAAATTAGAGATGAGTATTGGTGGTGAAAA
AGGTTCTGCATCAACAAAGACACCAGCAGACTTTCTCAAATCAATTCGGGGCCGTCCCGTAGTTGTGAAACTCAATTCTGGTGTTGACTACCGAGGTATATTTGCTTCTA
CTTTTCTTTTGCCTTGGTCCTTGGATAACTCTCTACCTGTTCTATTTGGTATTTTATTCTCAGAATTGTATCATTACTTTTAAGAATCTGTAGAAGTTCAGGGAAAACAA
CACTTGCAAATGTTGAGGCACTATCCTTTTTTTGTTCACAAATCTTCCTTATTGACAAATGGTGTCATTAATCAACCCTTTTTTCGTTACTTTTAAGAATATTTAGACAT
TGAGGGAAAACAACACTTGGAAATGTTGAGGCACTATCCTTTTTTTGTTCATGAATCTTCCTTGTTAACAAATGGTGTCATTAGTCAACCCTTTTTATTTCCCTATAATC
TCTTTCTTATGACCTTTGGACATTGTATGTACCATTCCATATGTTGTACAATTGTGTCCTTGAGTTCATATGATCTCTTTATCAATTCTTTGTTCTTCAAACTTGACTTG
TTTGTAATTTTTTTTAACATAAACCGAGCTTTCATGGAGAAAAAGTGAAAGGATACAAAAGAGGCACAACAAAGTGCCCAAAAAGCTGAGCCAAAGATAAGACCTATTGG
TGCCCACATATTCGTTACAGAAGTTCTTTGAAATTGAAAGTCCATGAAACTTAGCGAGAGTTTAGTAATGTAGGGAAGTTGTTATTGTGATTTGTTATGAATAGTCGGTT
GGAAATGGTAAAGGTATGGATTGATTTAGTTGGCTCAACTCTCAAGTTTGAGTGGAGGGTTCAAGTTCCTCAAATTACTTGTATTCCACTCTTCCTTCATCTTTATCTTT
CATTACTATTTTAGCTATTATTTTTGGTTCTATCACAATCACTGTTATGGCTATGCACACACCAAAAGTCTCCAGAATACGAAGGGGATTCTCACCATCAAGCAACCCAG
AAATAGGTGTTTGAACCATCCCTGACAGCAATTAACTGGAGAAAAAGGGGGATCACCCAAAGAGATGGCTTTCCAAGGGTTCTTGAAAGTCCCTTTCAACCCTCTTCCCA
AGGTTCATTCGAAGGGTGAGGGCCAAGGCGAAGTATTCAACTCCAAAGGAAAACACCACAACCATTTAGCCAAAACACCTCACTACAAATCCTCAAATTGCCAATACCCA
ACCCTAAACTCAATAGGTCTCATAACCCTCTCCCAGCTAACCAAATCTGAGCTGCCCCTCCCGTCAACACCCTACCATAGGAAATATGAACAATTTCTTTCACAAATGTT
GTTTTGATTTTAAACATGACCATTTATTGTCCTTTGTATAGGACCTTTATCTTTTCTTGTGCAGTATAACTGTTGAAAACCGGATAAAATCTATGTTGAATTCTAATGTG
AAGATCCCATTTGTTTCATTGTATAGGTATTCTTGCCTGTCTCGATGGATACATGAATATAGCAATGGAGCAGACCGAAGAATATGTAAATGGACAGTTGAAGAACAAAT
ATGGCGACGCTTTTATCCGCGGAAATAACGTTCTGTACATCAGTACTTCGAAGAGGACATTAGCAGAAGGGTCATCTTAGCGCATCTAAGAATCATGACAGGAAATGTGC
ATCCTTTGCAGTACGTTATGTTTCTTCCTTCAGTCTTATGCTGTAAAATGAGAGATCAATCGGAATTGGAATTGATTGAAATTGTATTTGTACAATGAAGTAGAAAATCC
ACCCATAGCGCCATGATGTGCTGTTCGTGTGCTTGTGAACAACTTCAATCAGAGAACTTGTTTTGTTAGAAATGGAATGCACATTATGATGAATTTTTGGATTTTTCTTT
TATTGAAATTACTGATCTAATCTAATCTGCTCTCACATTTTTTTACATTCTTTGGTCTTCTGAGACTAAGTAACAAGTTTTTTTAGTCTACTTGTAGAGGTCGTGTATTG
CCCTCAATCGTGCATTTGCTAAAGTTCCATTGCTTTCTTCTGTTCGAGCTAGAGTTATAATATTAGCTTGCGGCCATTTAAATAATTAGAGTGGATAAAATGAGTCACTG
AATTAACAACAAATTTGATGTTTCCCGAGAAGACAAGGTACAAGGTGAATTTATGGGAGTGATTTGGAAATTGTTGAAATTTCATTATCAGCAAGTACGTGGGTTCAATT
TAATGAAAATTTAAGTTTTCCCAA
Protein sequenceShow/hide protein sequence
MRESTTHELIQPLTGSSVFSSSFYDRRKLEMSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGIFASTFLLPWSLDNSLPVLFGILFSELYHYF